Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0000563

Physical Location & Seq

Genomic Coordinates Forward (+)

14001348 .. 14002853

Gene Structure 1506 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G157900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGATGATGGCGGAGGAGAAGGATTGGTTTTTCTATGTTAACATGGATGATGACCTATTGGTTCTAGACATTAGTAAATTGTTGGCAAGGAGTTCTCCGAGGCCCGAGTTTAAACTTGTTCATGGCTCTTATTTTCCAGACGGAAGGAATGTACCAGAAGGCATGAGATATATAATTGTGAATTCCAAACCCTATATTGTGGGAGGTAAGTCTTGCCCCAAGCGTCCTAGCGAATCTTTTAAACCCAACCTTGAAGTCATTGACTGTGAACCCACAGAGGGCAACAAAACTACACTTCCCACGACTTTTGCTCCCAAGGTAAATCCTGTGGTGGTCACCATAAAGGATAAAATCTATGTCATGTCCACGGAGCCTGTCGGGTACGAGATGGAAGAAGAATCGCCAGCCCTCTTCGAGGTTTTCGATCCGGTTACCGGGTTGTGGACAGTCCTCCCCAATCCCCCCTTCTCCGTTGGTACTGATGTTGTCCTTTTTGAATGTTCTTGGGGCGACACCCTCGTTGTGAGGCACTGGTTACACCAAAGATATTACGTTTTTGACACCCTTCAAAATAAATGGGAGGAGGATGATGCAATTGCATCCGGCGTCCCGAAGGCATCTATCTCCCGTTTTGCAGAATTCAACAACTTTCTGGTTAACGTCTATTATTGGGGTGGAGATGTTATTGCTTATAGTTTGGATCCGATCAACGGCATCCCGAAGCCGGTTGGGGAGATAGTTGAGCTTCGGAAGGTGTTATGGCAGCCTTGTCTAGAGTTTACCTCATCCTTCGTCAGCCATATGAGTGGTGATGATGGGCTTATGTGCATAATGAGTGGTGGCTGGGATCCGTCGAACAAGTTTTGTGTTCGTGTAGTGGTGTTCCAACTGCTCGTTACAAGCCTTGCTCCTGGTGAAGGATTTCGCGTCAATGCAGATATCAAGGCCAACGAAACTTATTATTTCAAATATTATTCTTTCAAACCGACTGGCGATCTACAAATCAGCTCAGTTGCAATGACGCTTGATCGTTCGGACAAGCATGACAATAAGCCTGATGCAAGTTGCAAGAATGAAAATCTTCCTAAGTTTGATAGGTTTGTACTTTGTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006479 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016278 GO:0016279 GO:0016740 GO:0016741 GO:0018022 GO:0018023 GO:0018026 GO:0018193 GO:0018205 GO:0019538 GO:0032259 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rubis-subs-bind SET

Protein Analysis

372

Amino Acids

42.0

Weight (kDa)

4.91

Isoelectric Point (pI)

41.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000563)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g40701 FvH4_3g40701 FvH4_3g42210 FvH4_4g30821 FvH4_4g30830 FvH4_4g30861 FvH4_4g30870 FvH4_4g30880 FvH4_4g30890 FvH4_6g30071 FvH4_6g44331 FvH4_6g44332 FvH4_6g44333
malus_domestica	MD15G1041200.v1.1 MD15G1041700.v1.1 MD15G1401000.v1.1
prunus_persica	Prupe.5G008800_v2.0.a1 Prupe.5G157900_v2.0.a1
pyrus_communis	pycom05g01010 pycom15g03820 pycom15g03830 pycom15g03850 pycom15g04240
rosa_chinensis	RchiOBHm_Chr5g0075231
rosa_laevigata	RLG00000008231 RLG00000008232 RLG00000008235 RLG00000008239 RLG00000008240 RLG00000008241 RLG00000021260 RLG00000021269 RLG00000036539 RLG00000036540 RLG00000037046
rosa_multiflora	Rmu_sc0000955.1_g000047 Rmu_sc0006420.1_g000034
rosa_roxburghii	Rroxscaffold_1G00000870 Rroxscaffold_1G00000880 Rroxscaffold_1G00006320 Rroxscaffold_2G00088990 Rroxscaffold_2G00089000 Rroxscaffold_2G00089010 Rroxscaffold_2G00089100 Rroxscaffold_5G00357190 Rroxscaffold_5G00357200
rosa_rugosa	Rorug04G0118300 Rorug04G0118400 Rorug05G0437400 Rorug05G0439900
rosa_samantha	Rh2AG552900 Rh2AG553000 Rh2BG566800 Rh2CG536900 Rh2DG575800 Rh2DG575900 Rh4AG177300 Rh4AG177400 Rh4AG178100 Rh4AG178300 Rh4AG178400 Rh4AG178500 Rh4BG177100 Rh4BG177200 Rh4BG177700 Rh4CG188300 Rh4CG188700 Rh4CG188800 Rh4CG189000 Rh4CG189100 Rh5AG494400 Rh5AG497000 Rh5AG537400 Rh5BG515800 Rh5BG515900 Rh5BG516000 Rh5CG539600 Rh5CG539700 Rh5CG539800 Rh5DG528600 Rh5DG528700
rosa_wichuraiana	Rw2G045740 Rw4G014830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	927
AciI	CCGC	1 cut(s)	11
AclWI	GGATC	5 cut(s)	419, 695, 708, 842, 855
AcsI	RAATTY	2 cut(s)	181, 638
AcyI	GRCGYC	1 cut(s)	606
AfaI	GTAC	4 cut(s)	153, 383, 478, 1104
AfiI	CCNNNNNNNGG	7 cut(s)	278, 415, 434, 441, 710, 724, 917
AgsI	TTSAA	6 cut(s)	254, 497, 569, 643, 967, 982
AjnI	CCWGG	1 cut(s)	910
AjuI	GAANNNNNNNTTGG	2 cut(s)	449, 481
AluBI	AGCT	2 cut(s)	745, 1008
AluI	AGCT	2 cut(s)	745, 1008
AlwI	GGATC	5 cut(s)	419, 695, 708, 842, 855
Ama87I	CYCGRG	1 cut(s)	104
AoxI	GGCC	2 cut(s)	101, 945
ApeKI	GCWGC	1 cut(s)	763
ApoI	RAATTY	2 cut(s)	181, 638
Asp700I	GAANNNNTTC	2 cut(s)	921, 1080
AspS9I	GGNCC	1 cut(s)	102
AsuC2I	CCSGG	1 cut(s)	436
AsuHPI	GGTGA	3 cut(s)	328, 821, 926
AvaI	CYCGRG	1 cut(s)	104
BaeI	ACNNNNGTAYC	2 cut(s)	468, 501
BamHI	GGATCC	2 cut(s)	700, 847
BbvI	GCAGC	1 cut(s)	775
BccI	CCATC	2 cut(s)	382, 809
BceAI	ACGGC	1 cut(s)	727
BciT130I	CCWGG	1 cut(s)	912
BcnI	CCSGG	1 cut(s)	436
BfaI	CTAG	3 cut(s)	65, 228, 773
BisI	GCNGC	1 cut(s)	764
BlsI	GCNGC	1 cut(s)	765
Bme1390I	CCNGG	2 cut(s)	436, 912
BmeT110I	CYCGRG	1 cut(s)	104
BmgT120I	GGNCC	1 cut(s)	102
BmiI	GGNNCC	3 cut(s)	372, 702, 849
BmrFI	CCNGG	2 cut(s)	436, 912
BmsI	GCATC	5 cut(s)	580, 608, 626, 723, 1048
BplI	GAGNNNNNCTC	2 cut(s)	767, 799
BpuMI	CCSGG	1 cut(s)	436
BsaHI	GRCGYC	1 cut(s)	606
BsaJI	CCNNGG	3 cut(s)	98, 315, 366
BsaWI	WCCGGW	1 cut(s)	427
BsaXI	ACNNNNNCTCC	2 cut(s)	295, 325
Bsc4I	CCNNNNNNNGG	7 cut(s)	278, 415, 434, 441, 710, 724, 917
Bse118I	RCCGGY	1 cut(s)	724
Bse1I	ACTGG	2 cut(s)	536, 994
Bse3DI	GCAATG	1 cut(s)	1023
BseBI	CCWGG	1 cut(s)	912
BseDI	CCNNGG	3 cut(s)	98, 315, 366
BseGI	GGATG	5 cut(s)	52, 592, 599, 714, 785
BseLI	CCNNNNNNNGG	7 cut(s)	278, 415, 434, 441, 710, 724, 917
BseMI	GCAATG	1 cut(s)	1023
BseMII	CTCAG	1 cut(s)	1023
BseNI	ACTGG	2 cut(s)	536, 994
BseRI	GAGGAG	2 cut(s)	29, 596
BseXI	GCAGC	1 cut(s)	775
BseYI	CCCAGC	1 cut(s)	843
Bsh1236I	CGCG	1 cut(s)	927
BshFI	GGCC	2 cut(s)	103, 947
BsiHKCI	CYCGRG	1 cut(s)	104
BsiSI	CCGG	4 cut(s)	428, 435, 603, 725
BslFI	GGGAC	1 cut(s)	593
BslI	CCNNNNNNNGG	7 cut(s)	278, 415, 434, 441, 710, 724, 917
BsmFI	GGGAC	1 cut(s)	593
BsnI	GGCC	2 cut(s)	103, 947
BsoBI	CYCGRG	1 cut(s)	104
Bsp143I	GATC	6 cut(s)	424, 700, 705, 847, 994, 1027
BspACI	CCGC	1 cut(s)	11
BspANI	GGCC	2 cut(s)	103, 947
BspCNI	CTCAG	1 cut(s)	1022
BspFNI	CGCG	1 cut(s)	927
BspLI	GGNNCC	3 cut(s)	372, 702, 849
BspPI	GGATC	5 cut(s)	419, 695, 708, 842, 855
BsrDI	GCAATG	1 cut(s)	1023
BsrFI	RCCGGY	1 cut(s)	724
BsrI	ACTGG	2 cut(s)	536, 994
BssAI	RCCGGY	1 cut(s)	724
BssECI	CCNNGG	3 cut(s)	98, 315, 366
BssMI	GATC	6 cut(s)	424, 700, 705, 847, 994, 1027
BssNI	GRCGYC	1 cut(s)	606
BssT1I	CCWWGG	1 cut(s)	315
Bst2UI	CCWGG	1 cut(s)	912
Bst4CI	ACNGT	2 cut(s)	266, 448
Bst6I	CTCTTC	1 cut(s)	416
BstACI	GRCGYC	1 cut(s)	606
BstC8I	GCNNGC	1 cut(s)	405
BstDEI	CTNAG	2 cut(s)	1009, 1086
BstDSI	CCRYGG	1 cut(s)	366
BstEII	GGTNACC	2 cut(s)	334, 430
BstENI	CCTNNNNNAGG	2 cut(s)	413, 915
BstF5I	GGATG	5 cut(s)	52, 592, 599, 714, 785
BstFNI	CGCG	1 cut(s)	927
BstKTI	GATC	6 cut(s)	427, 703, 708, 850, 997, 1030
BstMBI	GATC	6 cut(s)	424, 700, 705, 847, 994, 1027
BstNI	CCWGG	1 cut(s)	912
BstPI	GGTNACC	2 cut(s)	334, 430
BstSCI	CCNGG	2 cut(s)	434, 910
BstUI	CGCG	1 cut(s)	927
BstV1I	GCAGC	1 cut(s)	775
BstX2I	RGATCY	2 cut(s)	700, 847
BstXI	CCANNNNNNTGG	1 cut(s)	806
BstYI	RGATCY	2 cut(s)	700, 847
BsuRI	GGCC	2 cut(s)	103, 947
BtgI	CCRYGG	1 cut(s)	366
BtsCI	GGATG	5 cut(s)	52, 592, 599, 714, 785
BtsIMutI	CAGTG	1 cut(s)	529
Cac8I	GCNNGC	1 cut(s)	405
Cfr10I	RCCGGY	1 cut(s)	724
Cfr13I	GGNCC	1 cut(s)	102
CseI	GACGC	4 cut(s)	212, 595, 916, 1030
Csp6I	GTAC	4 cut(s)	152, 382, 477, 1103
CspCI	CAANNNNNGTGG	2 cut(s)	289, 324
CviAII	CATG	6 cut(s)	43, 122, 163, 361, 1043, 1113
CviQI	GTAC	4 cut(s)	152, 382, 477, 1103
DdeI	CTNAG	2 cut(s)	1009, 1086
DpnI	GATC	6 cut(s)	426, 702, 707, 849, 996, 1029
DpnII	GATC	6 cut(s)	424, 700, 705, 847, 994, 1027
DraI	TTTAAA	2 cut(s)	112, 241
Eam1104I	CTCTTC	1 cut(s)	416
EarI	CTCTTC	1 cut(s)	416
EciI	GGCGGA	1 cut(s)	26
Eco130I	CCWWGG	1 cut(s)	315
Eco32I	GATATC	1 cut(s)	940
Eco88I	CYCGRG	1 cut(s)	104
Eco91I	GGTNACC	2 cut(s)	334, 430
EcoNI	CCTNNNNNAGG	2 cut(s)	413, 915
EcoO65I	GGTNACC	2 cut(s)	334, 430
EcoRI	GAATTC	2 cut(s)	181, 638
EcoRII	CCWGG	1 cut(s)	910
EcoRV	GATATC	1 cut(s)	940
EcoT14I	CCWWGG	1 cut(s)	315
ErhI	CCWWGG	1 cut(s)	315
FaeI	CATG	6 cut(s)	46, 125, 166, 364, 1046, 1116
FaqI	GGGAC	1 cut(s)	593
FatI	CATG	6 cut(s)	42, 121, 162, 360, 1042, 1112
FauNDI	CATATG	1 cut(s)	801
Fnu4HI	GCNGC	1 cut(s)	764
FokI	GGATG	5 cut(s)	59, 586, 599, 701, 772
Fsp4HI	GCNGC	1 cut(s)	764
FspBI	CTAG	3 cut(s)	65, 228, 773
GluI	GCNGC	1 cut(s)	764
GsaI	CCCAGC	1 cut(s)	847
HaeIII	GGCC	2 cut(s)	103, 947
HapII	CCGG	4 cut(s)	428, 435, 603, 725
HgaI	GACGC	4 cut(s)	212, 595, 916, 1030
Hin1I	GRCGYC	1 cut(s)	606
Hin1II	CATG	6 cut(s)	46, 125, 166, 364, 1046, 1116
HincII	GTYRAC	2 cut(s)	40, 658
HindII	GTYRAC	2 cut(s)	40, 658
HinfI	GANTC	2 cut(s)	233, 398
HpaI	GTTAAC	2 cut(s)	40, 658
HpaII	CCGG	4 cut(s)	428, 435, 603, 725
HphI	GGTGA	3 cut(s)	328, 821, 926
Hpy166II	GTNNAC	6 cut(s)	40, 269, 366, 444, 658, 780
Hpy188I	TCNGA	4 cut(s)	99, 705, 750, 1036
Hpy188III	TCNNGA	5 cut(s)	65, 137, 610, 718, 773
Hpy8I	GTNNAC	6 cut(s)	40, 269, 366, 444, 658, 780
Hpy99I	CGWCG	1 cut(s)	856
HpyAV	CCTTC	9 cut(s)	13, 138, 152, 475, 575, 607, 745, 799, 911
HpyCH4III	ACNGT	2 cut(s)	266, 448
HpyCH4IV	ACGT	2 cut(s)	552, 660
HpyCH4V	TGCA	9 cut(s)	593, 599, 635, 828, 935, 1016, 1061, 1068, 1112
HpyF3I	CTNAG	2 cut(s)	1009, 1086
HpySE526I	ACGT	2 cut(s)	552, 660
Hsp92I	GRCGYC	1 cut(s)	606
Hsp92II	CATG	6 cut(s)	46, 125, 166, 364, 1046, 1116
KspAI	GTTAAC	2 cut(s)	40, 658
Kzo9I	GATC	6 cut(s)	424, 700, 705, 847, 994, 1027
LmnI	GCTCC	3 cut(s)	316, 370, 913
Lsp1109I	GCAGC	1 cut(s)	775
LweI	GCATC	5 cut(s)	580, 608, 626, 723, 1048
MaeI	CTAG	3 cut(s)	65, 228, 773
MaeII	ACGT	2 cut(s)	552, 660
MaeIII	GTNAC	4 cut(s)	334, 430, 534, 895
MalI	GATC	6 cut(s)	426, 702, 707, 849, 996, 1029
MboI	GATC	6 cut(s)	424, 700, 705, 847, 994, 1027
MboII	GAAGA	4 cut(s)	403, 404, 407, 1073
MfeI	CAATTG	1 cut(s)	594
MflI	RGATCY	2 cut(s)	700, 847
MluCI	AATT	5 cut(s)	77, 174, 181, 594, 638
MmeI	TCCRAC	1 cut(s)	910
MroXI	GAANNNNTTC	2 cut(s)	921, 1080
MseI	TTAA	4 cut(s)	39, 111, 240, 657
MslI	CAYNNNNRTG	1 cut(s)	804
MspI	CCGG	4 cut(s)	428, 435, 603, 725
MspR9I	CCNGG	2 cut(s)	436, 912
MssI	GTTTAAAC	1 cut(s)	112
MunI	CAATTG	1 cut(s)	594
MvaI	CCWGG	1 cut(s)	912
MvnI	CGCG	1 cut(s)	927
NciI	CCSGG	1 cut(s)	436
NdeI	CATATG	1 cut(s)	801
NdeII	GATC	6 cut(s)	424, 700, 705, 847, 994, 1027
NlaIII	CATG	6 cut(s)	46, 125, 166, 364, 1046, 1116
NlaIV	GGNNCC	3 cut(s)	372, 702, 849
NmuCI	GTSAC	1 cut(s)	334
PcsI	WCGNNNNNNNCGW	1 cut(s)	420
PdmI	GAANNNNTTC	2 cut(s)	921, 1080
PfeI	GAWTC	2 cut(s)	233, 398
PkrI	GCNGC	1 cut(s)	765
PmeI	GTTTAAAC	1 cut(s)	112
Psp6I	CCWGG	1 cut(s)	910
PspEI	GGTNACC	2 cut(s)	334, 430
PspFI	CCCAGC	1 cut(s)	843
PspGI	CCWGG	1 cut(s)	910
PspN4I	GGNNCC	3 cut(s)	372, 702, 849
PspPI	GGNCC	1 cut(s)	102
PsuI	RGATCY	2 cut(s)	700, 847
RsaI	GTAC	4 cut(s)	153, 383, 478, 1104
RsaNI	GTAC	4 cut(s)	152, 382, 477, 1103
RseI	CAYNNNNRTG	1 cut(s)	804
SaqAI	TTAA	4 cut(s)	39, 111, 240, 657
SatI	GCNGC	1 cut(s)	764
Sau3AI	GATC	6 cut(s)	424, 700, 705, 847, 994, 1027
Sau96I	GGNCC	1 cut(s)	102
ScrFI	CCNGG	2 cut(s)	436, 912
SfaNI	GCATC	5 cut(s)	580, 608, 626, 723, 1048
SmiMI	CAYNNNNRTG	1 cut(s)	804
Sse9I	AATT	5 cut(s)	77, 174, 181, 594, 638
SsiI	CCGC	1 cut(s)	11
SspI	AATATT	1 cut(s)	971
SspMI	CTAG	3 cut(s)	65, 228, 773
StyD4I	CCNGG	2 cut(s)	434, 910
StyI	CCWWGG	1 cut(s)	315
TaaI	ACNGT	2 cut(s)	266, 448
TaiI	ACGT	2 cut(s)	555, 663
TaqI	TCGA	3 cut(s)	414, 423, 854
TasI	AATT	5 cut(s)	77, 174, 181, 594, 638
TatI	WGTACW	1 cut(s)	1102
TfiI	GAWTC	2 cut(s)	233, 398
Tru1I	TTAA	4 cut(s)	39, 111, 240, 657
Tru9I	TTAA	4 cut(s)	39, 111, 240, 657
TscAI	CASTG	1 cut(s)	536
TseFI	GTSAC	1 cut(s)	334
TseI	GCWGC	1 cut(s)	763
Tsp45I	GTSAC	1 cut(s)	334
TspDTI	ATGAA	2 cut(s)	110, 1089
TspGWI	ACGGA	4 cut(s)	156, 383, 460, 840
TspRI	CASTG	1 cut(s)	536
XagI	CCTNNNNNAGG	2 cut(s)	413, 915
XapI	RAATTY	2 cut(s)	181, 638
XbaI	TCTAGA	2 cut(s)	64, 772
XmnI	GAANNNNTTC	2 cut(s)	921, 1080
XspI	CTAG	3 cut(s)	65, 228, 773

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.