Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0000563

Physical Location & Seq

Genomic Coordinates Forward (+)

78163239 .. 78178304

Gene Structure 15066 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG566800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGCTGATCAACAAGGAGTGCTTTTCAAACGTGAAGAAGACATGGGATGGACTATGCCGTCTTAATATTAGCAAGCAAATGTGTACCTCCGTCTCCTCAAAACAGCCCAACAACAAAGAGTGGTTTTTGTACTTGAATATGCGCAATCGAGTATGCCGTCTAAACATTAGGGAATTCTGCAAAAGGAGGCCAAAGTGTGAACTTGTGCATGATTATTATCCAGGCTGGCCTCGTAGGACAATTCCCACCTTGATGAAACCAGTAGTTGTTGGTTCCAAAGTTTATATGTGGGGTGGTATATGGAACCCCAATGTATATTCATCGAACCCCAATGTATATTCCTTTGATCCAGCTACGAGTCCACCCTTCCGTCTCTGCGAGGGTCTGATTTCCAGATTGGTTCCACCCAATATTGATTTCCCTTACATTATAGTGTTCAGCCTTGAGGAGAAAATCTATGTACTTGAAGAAGATCTATCCCATTTTAGGGTTTTTGATACGGTTCACCAATCCTGGAAAGACCTTCCTCACCCCACTTATTTGCCTAATACTGATCCCCGAGTGTCTGACTACTGCGTCTGCAGCCACATACTCTATATCAGTACCGGACCAGACATTTCATTCATTTTTGACACTCTTGAAGAGAAATGGGAGGATGCGAAGACAATCCATAATGGTGTTACAGAGAGATTCTTGGCTTTCACAGAATTTGAGGGATTTTTAATTGTCGTGACATCGTATATGAATAAGGTCGTTGCTTATAAGTTGGATTCAAATGGAATCCCCAACCTTGAGTCGTATCAAGTGCTACGTGAGATATCTTCTATAGGAGAGATGGCTTTCTTGGGTAAATGTGATGGTGGCCGACTGTGGTTGGTGAATTGTATCGAGGATGACTCTTATAACCGCTTAACAGGTGGGAAGAAGGGGGCGGCTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006479 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016278 GO:0016279 GO:0016740 GO:0016741 GO:0018022 GO:0018023 GO:0018026 GO:0018193 GO:0018205 GO:0019538 GO:0032259 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rubis-subs-bind SET

Protein Analysis

313

Amino Acids

36.19

Weight (kDa)

6.98

Isoelectric Point (pI)

48.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Kelch_FKB95	PF25210	86 - 274	1.1e-07	FKB95, Kelch-repeats domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000563)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g40701 FvH4_3g40701 FvH4_3g42210 FvH4_4g30821 FvH4_4g30830 FvH4_4g30861 FvH4_4g30870 FvH4_4g30880 FvH4_4g30890 FvH4_6g30071 FvH4_6g44331 FvH4_6g44332 FvH4_6g44333
malus_domestica	MD15G1041200.v1.1 MD15G1041700.v1.1 MD15G1401000.v1.1
prunus_persica	Prupe.5G008800_v2.0.a1 Prupe.5G157900_v2.0.a1
pyrus_communis	pycom05g01010 pycom15g03820 pycom15g03830 pycom15g03850 pycom15g04240
rosa_chinensis	RchiOBHm_Chr5g0075231
rosa_laevigata	RLG00000008231 RLG00000008232 RLG00000008235 RLG00000008239 RLG00000008240 RLG00000008241 RLG00000021260 RLG00000021269 RLG00000036539 RLG00000036540 RLG00000037046
rosa_multiflora	Rmu_sc0000955.1_g000047 Rmu_sc0006420.1_g000034
rosa_roxburghii	Rroxscaffold_1G00000870 Rroxscaffold_1G00000880 Rroxscaffold_1G00006320 Rroxscaffold_2G00088990 Rroxscaffold_2G00089000 Rroxscaffold_2G00089010 Rroxscaffold_2G00089100 Rroxscaffold_5G00357190 Rroxscaffold_5G00357200
rosa_rugosa	Rorug04G0118300 Rorug04G0118400 Rorug05G0437400 Rorug05G0439900
rosa_samantha	Rh2AG552900 Rh2AG553000 Rh2BG566800 Rh2CG536900 Rh2DG575800 Rh2DG575900 Rh4AG177300 Rh4AG177400 Rh4AG178100 Rh4AG178300 Rh4AG178400 Rh4AG178500 Rh4BG177100 Rh4BG177200 Rh4BG177700 Rh4CG188300 Rh4CG188700 Rh4CG188800 Rh4CG189000 Rh4CG189100 Rh5AG494400 Rh5AG497000 Rh5AG537400 Rh5BG515800 Rh5BG515900 Rh5BG516000 Rh5CG539600 Rh5CG539700 Rh5CG539800 Rh5DG528600 Rh5DG528700
rosa_wichuraiana	Rw2G045740 Rw4G014830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	762, 903
AasI	GACNNNNNNGTC	2 cut(s)	57, 575
Acc16I	TGCGCA	1 cut(s)	143
AciI	CCGC	2 cut(s)	907, 932
AclWI	GGATC	2 cut(s)	341, 548
AcoI	YGGCCR	1 cut(s)	862
AcsI	RAATTY	2 cut(s)	173, 707
AfaI	GTAC	4 cut(s)	85, 131, 462, 604
AfiI	CCNNNNNNNGG	2 cut(s)	486, 487
AgsI	TTSAA	5 cut(s)	27, 136, 467, 641, 774
AjnI	CCWGG	2 cut(s)	220, 512
AjuI	GAANNNNNNNTTGG	2 cut(s)	401, 433
AluBI	AGCT	1 cut(s)	353
AluI	AGCT	1 cut(s)	353
Alw26I	GTCTC	2 cut(s)	97, 377
AlwI	GGATC	2 cut(s)	341, 548
Ama87I	CYCGRG	1 cut(s)	558
AoxI	GGCC	3 cut(s)	188, 227, 862
ApeKI	GCWGC	1 cut(s)	582
ApoI	RAATTY	2 cut(s)	173, 707
AspLEI	GCGC	1 cut(s)	144
AspS9I	GGNCC	1 cut(s)	608
AsuHPI	GGTGA	3 cut(s)	497, 521, 889
AvaI	CYCGRG	1 cut(s)	558
AvaII	GGWCC	1 cut(s)	608
BbsI	GAAGAC	2 cut(s)	44, 668
BbvI	GCAGC	1 cut(s)	594
BccI	CCATC	3 cut(s)	41, 829, 851
BceAI	ACGGC	2 cut(s)	42, 141
BciT130I	CCWGG	2 cut(s)	222, 514
BclI	TGATCA	1 cut(s)	6
BcoDI	GTCTC	2 cut(s)	97, 377
BfmI	CTRYAG	2 cut(s)	580, 825
BglII	AGATCT	1 cut(s)	472
BisI	GCNGC	2 cut(s)	583, 933
BlsI	GCNGC	2 cut(s)	584, 934
Bme1390I	CCNGG	2 cut(s)	222, 514
Bme18I	GGWCC	1 cut(s)	608
BmeT110I	CYCGRG	1 cut(s)	558
BmgT120I	GGNCC	1 cut(s)	608
BmiI	GGNNCC	3 cut(s)	274, 305, 402
BmrFI	CCNGG	2 cut(s)	222, 514
BmsI	GCATC	1 cut(s)	646
BpiI	GAAGAC	2 cut(s)	44, 668
BplI	GAGNNNNNCTC	2 cut(s)	881, 913
BpuEI	CTTGAG	2 cut(s)	464, 812
BsaAI	YACGTR	1 cut(s)	812
BsaBI	GATNNNNATC	1 cut(s)	216
BsaWI	WCCGGW	1 cut(s)	605
Bsc4I	CCNNNNNNNGG	2 cut(s)	486, 487
Bse1I	ACTGG	1 cut(s)	260
Bse8I	GATNNNNATC	1 cut(s)	216
BseBI	CCWGG	2 cut(s)	222, 514
BseGI	GGATG	3 cut(s)	52, 661, 898
BseJI	GATNNNNATC	1 cut(s)	216
BseLI	CCNNNNNNNGG	2 cut(s)	486, 487
BseNI	ACTGG	1 cut(s)	260
BseRI	GAGGAG	2 cut(s)	85, 461
BseXI	GCAGC	1 cut(s)	594
BshFI	GGCC	3 cut(s)	190, 229, 864
BsiHKCI	CYCGRG	1 cut(s)	558
BsiSI	CCGG	1 cut(s)	606
BslI	CCNNNNNNNGG	2 cut(s)	486, 487
BsmAI	GTCTC	2 cut(s)	97, 377
BsmBI	CGTCTC	2 cut(s)	97, 377
BsnI	GGCC	3 cut(s)	190, 229, 864
BsoBI	CYCGRG	1 cut(s)	558
Bsp143I	GATC	4 cut(s)	6, 346, 472, 553
BspACI	CCGC	2 cut(s)	907, 932
BspANI	GGCC	3 cut(s)	190, 229, 864
BspLI	GGNNCC	3 cut(s)	274, 305, 402
BspMAI	CTGCAG	1 cut(s)	584
BspPI	GGATC	2 cut(s)	341, 548
BsrI	ACTGG	1 cut(s)	260
BssMI	GATC	4 cut(s)	6, 346, 472, 553
Bst2UI	CCWGG	2 cut(s)	222, 514
Bst4CI	ACNGT	2 cut(s)	502, 870
Bst6I	CTCTTC	1 cut(s)	636
BstBAI	YACGTR	1 cut(s)	812
BstC8I	GCNNGC	2 cut(s)	74, 227
BstF5I	GGATG	3 cut(s)	52, 661, 898
BstHHI	GCGC	1 cut(s)	144
BstKTI	GATC	4 cut(s)	9, 349, 475, 556
BstMAI	GTCTC	2 cut(s)	97, 377
BstMBI	GATC	4 cut(s)	6, 346, 472, 553
BstMWI	GCNNNNNNNGC	1 cut(s)	582
BstNI	CCWGG	2 cut(s)	222, 514
BstSCI	CCNGG	2 cut(s)	220, 512
BstSFI	CTRYAG	2 cut(s)	580, 825
BstV1I	GCAGC	1 cut(s)	594
BstV2I	GAAGAC	2 cut(s)	44, 668
BstX2I	RGATCY	1 cut(s)	472
BstYI	RGATCY	1 cut(s)	472
BsuRI	GGCC	3 cut(s)	190, 229, 864
BtsCI	GGATG	3 cut(s)	52, 661, 898
Cac8I	GCNNGC	2 cut(s)	74, 227
CfoI	GCGC	1 cut(s)	144
Cfr13I	GGNCC	1 cut(s)	608
CseI	GACGC	1 cut(s)	565
Csp6I	GTAC	4 cut(s)	84, 130, 461, 603
CviAII	CATG	2 cut(s)	42, 209
CviQI	GTAC	4 cut(s)	84, 130, 461, 603
DpnI	GATC	4 cut(s)	8, 348, 474, 555
DpnII	GATC	4 cut(s)	6, 346, 472, 553
DrdI	GACNNNNNNGTC	2 cut(s)	57, 575
DseDI	GACNNNNNNGTC	2 cut(s)	57, 575
EaeI	YGGCCR	1 cut(s)	862
Eam1104I	CTCTTC	1 cut(s)	636
EarI	CTCTTC	1 cut(s)	636
Eco32I	GATATC	1 cut(s)	819
Eco47I	GGWCC	1 cut(s)	608
Eco88I	CYCGRG	1 cut(s)	558
EcoRI	GAATTC	1 cut(s)	173
EcoRII	CCWGG	2 cut(s)	220, 512
EcoRV	GATATC	1 cut(s)	819
Esp3I	CGTCTC	2 cut(s)	97, 377
FaeI	CATG	2 cut(s)	45, 212
FalI	AAGNNNNNCTT	1 cut(s)	37
FatI	CATG	2 cut(s)	41, 208
FbaI	TGATCA	1 cut(s)	6
Fnu4HI	GCNGC	2 cut(s)	583, 933
FokI	GGATG	3 cut(s)	59, 668, 905
Fsp4HI	GCNGC	2 cut(s)	583, 933
FspI	TGCGCA	1 cut(s)	143
GlaI	GCGC	1 cut(s)	143
GluI	GCNGC	2 cut(s)	583, 933
HaeIII	GGCC	3 cut(s)	190, 229, 864
HapII	CCGG	1 cut(s)	606
HgaI	GACGC	1 cut(s)	565
HhaI	GCGC	1 cut(s)	144
Hin1II	CATG	2 cut(s)	45, 212
Hin6I	GCGC	1 cut(s)	142
HinP1I	GCGC	1 cut(s)	142
HinfI	GANTC	6 cut(s)	358, 690, 770, 780, 794, 896
HpaII	CCGG	1 cut(s)	606
HphI	GGTGA	3 cut(s)	497, 521, 889
Hpy166II	GTNNAC	4 cut(s)	84, 200, 362, 505
Hpy188I	TCNGA	2 cut(s)	387, 568
Hpy188III	TCNNGA	3 cut(s)	393, 638, 730
Hpy8I	GTNNAC	4 cut(s)	84, 200, 362, 505
HpyAV	CCTTC	3 cut(s)	376, 533, 919
HpyCH4III	ACNGT	2 cut(s)	502, 870
HpyCH4IV	ACGT	2 cut(s)	30, 811
HpyCH4V	TGCA	3 cut(s)	180, 208, 582
HpyF10VI	GCNNNNNNNGC	1 cut(s)	582
HpySE526I	ACGT	2 cut(s)	30, 811
Hsp92II	CATG	2 cut(s)	45, 212
HspAI	GCGC	1 cut(s)	142
Ksp22I	TGATCA	1 cut(s)	6
Kzo9I	GATC	4 cut(s)	6, 346, 472, 553
Lsp1109I	GCAGC	1 cut(s)	594
LweI	GCATC	1 cut(s)	646
MaeII	ACGT	2 cut(s)	30, 811
MaeIII	GTNAC	2 cut(s)	679, 730
MalI	GATC	4 cut(s)	8, 348, 474, 555
MboI	GATC	4 cut(s)	6, 346, 472, 553
MboII	GAAGA	8 cut(s)	46, 49, 479, 482, 653, 673, 813, 934
MflI	RGATCY	1 cut(s)	472
MluCI	AATT	5 cut(s)	173, 240, 707, 723, 880
MlyI	GAGTC	3 cut(s)	367, 803, 890
MmeI	TCCRAC	1 cut(s)	747
MseI	TTAA	3 cut(s)	63, 722, 911
MslI	CAYNNNNRTG	3 cut(s)	251, 431, 675
MspI	CCGG	1 cut(s)	606
MspR9I	CCNGG	2 cut(s)	222, 514
MvaI	CCWGG	2 cut(s)	222, 514
MwoI	GCNNNNNNNGC	1 cut(s)	582
NdeII	GATC	4 cut(s)	6, 346, 472, 553
NlaIII	CATG	2 cut(s)	45, 212
NlaIV	GGNNCC	3 cut(s)	274, 305, 402
NmuCI	GTSAC	1 cut(s)	730
NsbI	TGCGCA	1 cut(s)	143
PcsI	WCGNNNNNNNCGW	1 cut(s)	154
PfeI	GAWTC	3 cut(s)	690, 770, 780
PfoI	TCCNGGA	1 cut(s)	512
PkrI	GCNGC	2 cut(s)	584, 934
PleI	GAGTC	3 cut(s)	366, 802, 890
PpsI	GAGTC	3 cut(s)	366, 802, 890
Ppu21I	YACGTR	1 cut(s)	812
PsiI	TTATAA	2 cut(s)	762, 903
Psp6I	CCWGG	2 cut(s)	220, 512
PspGI	CCWGG	2 cut(s)	220, 512
PspN4I	GGNNCC	3 cut(s)	274, 305, 402
PspPI	GGNCC	1 cut(s)	608
PstI	CTGCAG	1 cut(s)	584
PsuI	RGATCY	1 cut(s)	472
RsaI	GTAC	4 cut(s)	85, 131, 462, 604
RsaNI	GTAC	4 cut(s)	84, 130, 461, 603
RseI	CAYNNNNRTG	3 cut(s)	251, 431, 675
SaqAI	TTAA	3 cut(s)	63, 722, 911
SatI	GCNGC	2 cut(s)	583, 933
Sau3AI	GATC	4 cut(s)	6, 346, 472, 553
Sau96I	GGNCC	1 cut(s)	608
SchI	GAGTC	3 cut(s)	367, 803, 890
ScrFI	CCNGG	2 cut(s)	222, 514
SetI	ASST	9 cut(s)	33, 89, 251, 355, 525, 753, 792, 814, 919
SfaNI	GCATC	1 cut(s)	646
SfcI	CTRYAG	2 cut(s)	580, 825
SinI	GGWCC	1 cut(s)	608
SmiMI	CAYNNNNRTG	3 cut(s)	251, 431, 675
SmlI	CTYRAG	2 cut(s)	443, 791
SmoI	CTYRAG	2 cut(s)	443, 791
Sse9I	AATT	5 cut(s)	173, 240, 707, 723, 880
SsiI	CCGC	2 cut(s)	907, 932
SspI	AATATT	2 cut(s)	67, 412
StyD4I	CCNGG	2 cut(s)	220, 512
TaaI	ACNGT	2 cut(s)	502, 870
TaiI	ACGT	2 cut(s)	33, 814
TaqI	TCGA	3 cut(s)	148, 323, 888
TasI	AATT	5 cut(s)	173, 240, 707, 723, 880
TatI	WGTACW	2 cut(s)	129, 460
TauI	GCSGC	1 cut(s)	935
TfiI	GAWTC	3 cut(s)	690, 770, 780
Tru1I	TTAA	3 cut(s)	63, 722, 911
Tru9I	TTAA	3 cut(s)	63, 722, 911
TseFI	GTSAC	1 cut(s)	730
TseI	GCWGC	1 cut(s)	582
Tsp45I	GTSAC	1 cut(s)	730
TspDTI	ATGAA	5 cut(s)	269, 309, 609, 613, 758
TspGWI	ACGGA	2 cut(s)	79, 359
VpaK11BI	GGWCC	1 cut(s)	608
XapI	RAATTY	2 cut(s)	173, 707

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.