Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0000563

Physical Location & Seq

Genomic Coordinates Forward (+)

40869163 .. 40871762

Gene Structure 2600 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG189000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2322 bp

ATGTCGATGAAGAAGGATATGTTCTTGTACTTGAATATGAACGACCGACTTTTGGGTCTAAATCTTAGAGAGTTCAGCGAAAGGTACTCTTCCAAGCCTGAGTTTGAAGTTGTTCAGGTTTTGAATTATCCGAACCGCCGCCGTCCAGGTACAAATTCCGATATCGCAAAGAAAGATTGTATGACTGTGTGTAATTCCAACTTGTATATGATGAGGGTAACTGAAAATCACCGCGCGTGTGGTAATTTTGACTTGGATGTTTATTCCTTTGATCCCACTGGGGCAGATGACCGTAAATCCATCCGTCTATGTGACAAAAGTGCCTCACCTAGATTGATGTATAGTAATCGTCCTATAGTGTTCACCCTCGATGAGAAAATCTATGTTCTGGGAGTACCAACATATTTATACAGCACACGTAGTGATGATGTGGCGGAAGAGCCACAACTTTTTTGGGTTTTTGATCCTTTTCACGAATCCTGGAAGCCACTTCCTCATCCTCTCTTCTACAATCATGGTCCGTGTAATGTGTATTATGATGTTTCTTTTGGTCACAAGCTTTTTATTCGTACATACAATCAAAGACACGTTTTTGATGCTCACCAAGAGAGATGGGAGGGTTCAGAAAGGCACGGTGTTTACGATGAGCTTTACTTTGAATTTAATGCTATTGTAGAATTTGGTGAAGGCTTTTTAATTGCTGTGCCGGACATGATGAGCAATGAACAGATGAGGCATGAGCTTGTTGCTTATAAGTTGGATGTGAACGGGATCCCTCAGCCGCATCAGGTGCTACACGAGCTTACGGGGATGTTTTCATGGCGTCCTTTGTTAATTAACCCTCGAGTTTTTTTAGGTAAATTTGATGATAACGTTATGTGGTTGGTGTATTGTGGCAAGGATAATGTCCAGAAATTTTCTTGTATAGGCGTCGCAGTGTTTCGAGTTTCTATGTCATATGACAATGCTGGCAAAGTAGTGTTTTTGGTAGATATTGAGGCTGCGGATTTTATCGATTCAAATAGTTATGAGGTTCAAGGCGCCAAGGAGACCACTCTAGTTTACTCAGCTTCTGCCATGTGCCATGATAATTTGAAGACCAAGGATTGGTTTTTGTATTTGAATATGGGGGATCGACTATGCAGTATAAATATTAGCGAATTCTGCAAAAGGAAGAGCTCTTTCATAGCTAAGTTCGGAGTTGTACATGATTTCTATCCAGAATGTCGTCCTTGTACAATTCCCAGTAGAATAAGACATATAACTGTGGGATCAAACGTGTATCTGGTTGGCGGTCAAAGACTCGATGGAAGAGTCCATAGTGATGCACATGGGAGATGTTATGCAATGCCCAACTTGGATATTTATGCATTTAATCACAATTATGAAACAGAAGAGGGTCCTTCTATCACCCTCTGCCAATGTGAAGGTTCCATTCCCAGATTGATTGATCCACGGACCAAAACCATTCCTATCACGATTGCTCTTGAGGATAAGATCTATGTTCTGGCAAAAAGACCATACTTGGGGGACGCAGAAGAATTTAATGATGATGATCGGCCACAACTTTTTAAGGTTTTTGATCCCCTCAAACAATCCTGGAAACACCTCCCTCATCCCCCCTGCTATAATATATCATCACGTGACACCGAGCCATATGTGTGTAACTACTTCTTTTGGGGCCACAAGCTCATTATTCGTACCGAGGCAAAGAAAAAAAAGAAGAACCCCGGCACATACATTTTTGACACTCACCAAGAGAAATGGCAGGATGCCAAGAATATCAGTGCAATCCTTGATGAGGGTTTTAGGGTTGTGGCAGAATTCCAGGGATTTTTAATTGGCATGCCTTATAAGCGCCAAGAACTTGTTGCTTACCATTTGGATTCGAATGGGATTCCCAAACTCTCGAAGGTGCTACACGAGCTGCAAGAGATATTTAGCTCTTGTTTACTTGTCTCCGACTGTTTTCTTGGTAAATATGATGGTGATCGTATGTGGCTGGTGTATTCTGCGCAGGATAGTATGCAATTTTGGCATGCGCGTGTAGCGATGTTTCATGTTTTCATCTCTAATGACTTTGATGGAAATCAAGTCCTCTGTGCAGATCTTGAGGCTGCACAATTTTTTCATTTTGATAGATTTATTAGCTCTGCTTTCACTTATCATGGCCCAAACTCTCGAAGGTGCTACACGAGCATCAAGAGATATTTAGCTCTTGTTTACTTGTCTCCGACTGTTTTCTTAGTAAATATGATGGTGATCGTATGTGGCTGGTGGATTCTGCACAGGATGGTATGCAATTTTGGCATGCGCGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006479 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016278 GO:0016279 GO:0016740 GO:0016741 GO:0018022 GO:0018023 GO:0018026 GO:0018193 GO:0018205 GO:0019538 GO:0032259 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rubis-subs-bind SET

Protein Analysis

773

Amino Acids

89.93

Weight (kDa)

6.41

Isoelectric Point (pI)

38.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Kelch_FKB95	PF25210	116 - 209	6.5e-08	FKB95, Kelch-repeats domain
Kelch_FKB95	PF25210	454 - 685	2.3e-06	FKB95, Kelch-repeats domain
DUF1668	PF07893	479 - 592	3e-09	Protein of unknown function (DUF1668)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000563)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g40701 FvH4_3g40701 FvH4_3g42210 FvH4_4g30821 FvH4_4g30830 FvH4_4g30861 FvH4_4g30870 FvH4_4g30880 FvH4_4g30890 FvH4_6g30071 FvH4_6g44331 FvH4_6g44332 FvH4_6g44333
malus_domestica	MD15G1041200.v1.1 MD15G1041700.v1.1 MD15G1401000.v1.1
prunus_persica	Prupe.5G008800_v2.0.a1 Prupe.5G157900_v2.0.a1
pyrus_communis	pycom05g01010 pycom15g03820 pycom15g03830 pycom15g03850 pycom15g04240
rosa_chinensis	RchiOBHm_Chr5g0075231
rosa_laevigata	RLG00000008231 RLG00000008232 RLG00000008235 RLG00000008239 RLG00000008240 RLG00000008241 RLG00000021260 RLG00000021269 RLG00000036539 RLG00000036540 RLG00000037046
rosa_multiflora	Rmu_sc0000955.1_g000047 Rmu_sc0006420.1_g000034
rosa_roxburghii	Rroxscaffold_1G00000870 Rroxscaffold_1G00000880 Rroxscaffold_1G00006320 Rroxscaffold_2G00088990 Rroxscaffold_2G00089000 Rroxscaffold_2G00089010 Rroxscaffold_2G00089100 Rroxscaffold_5G00357190 Rroxscaffold_5G00357200
rosa_rugosa	Rorug04G0118300 Rorug04G0118400 Rorug05G0437400 Rorug05G0439900
rosa_samantha	Rh2AG552900 Rh2AG553000 Rh2BG566800 Rh2CG536900 Rh2DG575800 Rh2DG575900 Rh4AG177300 Rh4AG177400 Rh4AG178100 Rh4AG178300 Rh4AG178400 Rh4AG178500 Rh4BG177100 Rh4BG177200 Rh4BG177700 Rh4CG188300 Rh4CG188700 Rh4CG188800 Rh4CG189000 Rh4CG189100 Rh5AG494400 Rh5AG497000 Rh5AG537400 Rh5BG515800 Rh5BG515900 Rh5BG516000 Rh5CG539600 Rh5CG539700 Rh5CG539800 Rh5DG528600 Rh5DG528700
rosa_wichuraiana	Rw2G045740 Rw4G014830

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	753, 1854
AasI	GACNNNNNNGTC	1 cut(s)	54
Acc16I	TGCGCA	1 cut(s)	2016
AccB1I	GGYRCC	1 cut(s)	1040
AccB7I	CCANNNNNTGG	1 cut(s)	1107
AccII	CGCG	4 cut(s)	234, 236, 2044, 2316
AciI	CCGC	7 cut(s)	136, 139, 232, 434, 782, 1004, 1293
AclI	AACGTT	1 cut(s)	873
AclWI	GGATC	8 cut(s)	266, 458, 766, 779, 1140, 1279, 1445, 1577
AcoI	YGGCCR	1 cut(s)	1559
AcsI	RAATTY	8 cut(s)	154, 659, 677, 860, 914, 1160, 1541, 1823
AcvI	CACGTG	1 cut(s)	1643
AcyI	GRCGYC	3 cut(s)	823, 930, 1041
AdeI	CACNNNGTG	1 cut(s)	422
AfaI	GTAC	8 cut(s)	29, 86, 151, 396, 571, 1206, 1237, 1702
AfiI	CCNNNNNNNGG	4 cut(s)	52, 1107, 1526, 1801
AflIII	ACRYGT	3 cut(s)	416, 586, 1278
AgsI	TTSAA	8 cut(s)	34, 107, 124, 659, 1020, 1037, 1096, 1123
AjnI	CCWGG	4 cut(s)	145, 479, 1598, 1827
Alw21I	GWGCWC	1 cut(s)	1181
Alw26I	GTCTC	3 cut(s)	1043, 1963, 2235
AlwI	GGATC	8 cut(s)	266, 458, 766, 779, 1140, 1279, 1445, 1577
AlwNI	CAGNNNCTG	1 cut(s)	1073
Ama87I	CYCGRG	1 cut(s)	843
AoxI	GGCC	3 cut(s)	1559, 1681, 2170
ApeKI	GCWGC	3 cut(s)	1001, 1927, 2117
ApoI	RAATTY	8 cut(s)	154, 659, 677, 860, 914, 1160, 1541, 1823
Asp700I	GAANNNNTTC	1 cut(s)	111
AspLEI	GCGC	6 cut(s)	236, 1043, 1860, 2017, 2044, 2316
AspS9I	GGNCC	5 cut(s)	518, 1400, 1458, 1681, 2171
AsuC2I	CCSGG	1 cut(s)	1731
AsuHPI	GGTGA	9 cut(s)	221, 318, 355, 593, 695, 1402, 1745, 2000, 2272
AsuII	TTCGAA	1 cut(s)	1889
AvaI	CYCGRG	1 cut(s)	843
AvaII	GGWCC	3 cut(s)	518, 1400, 1458
BamHI	GGATCC	1 cut(s)	771
BanI	GGYRCC	1 cut(s)	1040
BanII	GRGCYC	1 cut(s)	1181
BauI	CACGAG	3 cut(s)	797, 1922, 2194
BbrPI	CACGTG	1 cut(s)	1643
BbsI	GAAGAC	1 cut(s)	1103
Bbv12I	GWGCWC	1 cut(s)	1181
BbvCI	CCTCAGC	1 cut(s)	777
BbvI	GCAGC	3 cut(s)	988, 1914, 2104
BccI	CCATC	7 cut(s)	308, 606, 1301, 1979, 2078, 2251, 2287
BceAI	ACGGC	1 cut(s)	126
BciT130I	CCWGG	4 cut(s)	147, 481, 1600, 1829
BcnI	CCSGG	1 cut(s)	1731
BcoDI	GTCTC	3 cut(s)	1043, 1963, 2235
BfaI	CTAG	2 cut(s)	330, 1058
BfmI	CTRYAG	1 cut(s)	354
BfoI	RGCGCY	2 cut(s)	1044, 1861
BglII	AGATCT	2 cut(s)	1497, 2107
BisI	GCNGC	5 cut(s)	139, 782, 1002, 1928, 2118
BlsI	GCNGC	5 cut(s)	140, 783, 1003, 1929, 2119
Bme1390I	CCNGG	5 cut(s)	147, 481, 1600, 1731, 1829
Bme18I	GGWCC	3 cut(s)	518, 1400, 1458
BmeT110I	CYCGRG	1 cut(s)	843
BmgT120I	GGNCC	5 cut(s)	518, 1400, 1458, 1681, 2171
BmiI	GGNNCC	5 cut(s)	773, 1042, 1401, 1432, 1682
BmrFI	CCNGG	5 cut(s)	147, 481, 1600, 1731, 1829
BmrI	ACTGGG	2 cut(s)	288, 1239
BmsI	GCATC	5 cut(s)	586, 793, 1315, 1762, 2208
BmuI	ACTGGG	2 cut(s)	288, 1239
BpiI	GAAGAC	1 cut(s)	1103
Bpu10I	CCTNAGC	1 cut(s)	777
Bpu14I	TTCGAA	1 cut(s)	1889
BpuEI	CTTGAG	2 cut(s)	1508, 2132
BpuMI	CCSGG	1 cut(s)	1731
Bsa29I	ATCGAT	1 cut(s)	1014
BsaAI	YACGTR	2 cut(s)	419, 1643
BsaBI	GATNNNNATC	5 cut(s)	1215, 1554, 1989, 2088, 2261
BsaHI	GRCGYC	3 cut(s)	823, 930, 1041
BsaI	GGTCTC	1 cut(s)	1043
BsaJI	CCNNGG	6 cut(s)	1044, 1101, 1454, 1704, 1729, 1828
Bsc4I	CCNNNNNNNGG	4 cut(s)	52, 1107, 1526, 1801
Bse1I	ACTGG	2 cut(s)	283, 1245
Bse3DI	GCAATG	2 cut(s)	727, 1353
Bse8I	GATNNNNATC	5 cut(s)	1215, 1554, 1989, 2088, 2261
BseBI	CCWGG	4 cut(s)	147, 481, 1600, 1829
BseCI	ATCGAT	1 cut(s)	1014
BseDI	CCNNGG	6 cut(s)	1044, 1101, 1454, 1704, 1729, 1828
BseGI	GGATG	8 cut(s)	262, 300, 496, 766, 816, 1615, 1777, 2298
BseJI	GATNNNNATC	5 cut(s)	1215, 1554, 1989, 2088, 2261
BseLI	CCNNNNNNNGG	4 cut(s)	52, 1107, 1526, 1801
BseMI	GCAATG	2 cut(s)	727, 1353
BseMII	CTCAG	3 cut(s)	90, 791, 1080
BseNI	ACTGG	2 cut(s)	283, 1245
BseXI	GCAGC	3 cut(s)	988, 1914, 2104
BsgI	GTGCAG	3 cut(s)	2103, 2124, 2270
Bsh1236I	CGCG	4 cut(s)	234, 236, 2044, 2316
Bsh1285I	CGRYCG	1 cut(s)	46
BshFI	GGCC	3 cut(s)	1561, 1683, 2172
BshNI	GGYRCC	1 cut(s)	1040
BshVI	ATCGAT	1 cut(s)	1014
BsiEI	CGRYCG	1 cut(s)	46
BsiHKAI	GWGCWC	1 cut(s)	1181
BsiHKCI	CYCGRG	1 cut(s)	843
BsiSI	CCGG	2 cut(s)	707, 1731
BslFI	GGGAC	1 cut(s)	1544
BslI	CCNNNNNNNGG	4 cut(s)	52, 1107, 1526, 1801
BsmAI	GTCTC	3 cut(s)	1043, 1963, 2235
BsmFI	GGGAC	1 cut(s)	1544
BsnI	GGCC	3 cut(s)	1561, 1683, 2172
Bso31I	GGTCTC	1 cut(s)	1043
BsoBI	CYCGRG	1 cut(s)	843
Bsp119I	TTCGAA	1 cut(s)	1889
Bsp1286I	GDGCHC	1 cut(s)	1181
Bsp1407I	TGTACA	2 cut(s)	1204, 1235
BspACI	CCGC	7 cut(s)	136, 139, 232, 434, 782, 1004, 1293
BspANI	GGCC	3 cut(s)	1561, 1683, 2172
BspCNI	CTCAG	3 cut(s)	91, 790, 1079
BspDI	ATCGAT	1 cut(s)	1014
BspFNI	CGCG	4 cut(s)	234, 236, 2044, 2316
BspLI	GGNNCC	5 cut(s)	773, 1042, 1401, 1432, 1682
BspPI	GGATC	8 cut(s)	266, 458, 766, 779, 1140, 1279, 1445, 1577
BspQI	GCTCTTC	2 cut(s)	432, 1169
BspT104I	TTCGAA	1 cut(s)	1889
BspT107I	GGYRCC	1 cut(s)	1040
BspTNI	GGTCTC	1 cut(s)	1043
BsrDI	GCAATG	2 cut(s)	727, 1353
BsrGI	TGTACA	2 cut(s)	1204, 1235
BsrI	ACTGG	2 cut(s)	283, 1245
BssECI	CCNNGG	6 cut(s)	1044, 1101, 1454, 1704, 1729, 1828
BssNI	GRCGYC	3 cut(s)	823, 930, 1041
BssSI	CACGAG	3 cut(s)	797, 1922, 2194
BssT1I	CCWWGG	2 cut(s)	1044, 1101
Bst2BI	CACGAG	3 cut(s)	797, 1922, 2194
Bst2UI	CCWGG	4 cut(s)	147, 481, 1600, 1829
Bst4CI	ACNGT	6 cut(s)	187, 293, 635, 1267, 1967, 2239
Bst6I	CTCTTC	6 cut(s)	94, 432, 509, 1169, 1306, 1389
BstACI	GRCGYC	3 cut(s)	823, 930, 1041
BstAPI	GCANNNNNTGC	1 cut(s)	790
BstAUI	TGTACA	2 cut(s)	1204, 1235
BstBAI	YACGTR	2 cut(s)	419, 1643
BstBI	TTCGAA	1 cut(s)	1889
BstC8I	GCNNGC	4 cut(s)	970, 1847, 2040, 2312
BstDEI	CTNAG	6 cut(s)	65, 99, 777, 1066, 1191, 2245
BstDSI	CCRYGG	1 cut(s)	1454
BstENI	CCTNNNNNAGG	1 cut(s)	1799
BstF5I	GGATG	8 cut(s)	262, 300, 496, 766, 816, 1615, 1777, 2298
BstFNI	CGCG	4 cut(s)	234, 236, 2044, 2316
BstH2I	RGCGCY	2 cut(s)	1044, 1861
BstHHI	GCGC	6 cut(s)	236, 1043, 1860, 2017, 2044, 2316
BstMAI	GTCTC	3 cut(s)	1043, 1963, 2235
BstMCI	CGRYCG	1 cut(s)	46
BstMWI	GCNNNNNNNGC	9 cut(s)	790, 799, 1164, 1855, 1924, 2035, 2048, 2196, 2307
BstNI	CCWGG	4 cut(s)	147, 481, 1600, 1829
BstNSI	RCATGY	3 cut(s)	1849, 2042, 2314
BstSCI	CCNGG	5 cut(s)	145, 479, 1598, 1729, 1827
BstSFI	CTRYAG	1 cut(s)	354
BstUI	CGCG	4 cut(s)	234, 236, 2044, 2316
BstV1I	GCAGC	3 cut(s)	988, 1914, 2104
BstV2I	GAAGAC	1 cut(s)	1103
BstX2I	RGATCY	3 cut(s)	771, 1497, 2107
BstYI	RGATCY	3 cut(s)	771, 1497, 2107
Bsu15I	ATCGAT	1 cut(s)	1014
BsuRI	GGCC	3 cut(s)	1561, 1683, 2172
BsuTUI	ATCGAT	1 cut(s)	1014
BtgI	CCRYGG	1 cut(s)	1454
BtgZI	GCGATG	1 cut(s)	2066
BtsCI	GGATG	8 cut(s)	262, 300, 496, 766, 816, 1615, 1777, 2298
BtsI	GCAGTG	1 cut(s)	942
BtsIMutI	CAGTG	3 cut(s)	276, 942, 1792
Cac8I	GCNNGC	4 cut(s)	970, 1847, 2040, 2312
CaiI	CAGNNNCTG	1 cut(s)	1073
CfoI	GCGC	6 cut(s)	236, 1043, 1860, 2017, 2044, 2316
Cfr13I	GGNCC	5 cut(s)	518, 1400, 1458, 1681, 2171
ClaI	ATCGAT	1 cut(s)	1014
CseI	GACGC	3 cut(s)	812, 919, 1541
Csp6I	GTAC	8 cut(s)	28, 85, 150, 395, 570, 1205, 1236, 1701
CviQI	GTAC	8 cut(s)	28, 85, 150, 395, 570, 1205, 1236, 1701
DdeI	CTNAG	6 cut(s)	65, 99, 777, 1066, 1191, 2245
DinI	GGCGCC	1 cut(s)	1042
DraIII	CACNNNGTG	1 cut(s)	422
DrdI	GACNNNNNNGTC	1 cut(s)	54
DseDI	GACNNNNNNGTC	1 cut(s)	54
EaeI	YGGCCR	1 cut(s)	1559
Eam1104I	CTCTTC	6 cut(s)	94, 432, 509, 1169, 1306, 1389
EarI	CTCTTC	6 cut(s)	94, 432, 509, 1169, 1306, 1389
EciI	GGCGGA	1 cut(s)	449
Ecl136II	GAGCTC	1 cut(s)	1179
Eco130I	CCWWGG	2 cut(s)	1044, 1101
Eco24I	GRGCYC	1 cut(s)	1181
Eco31I	GGTCTC	1 cut(s)	1043
Eco32I	GATATC	1 cut(s)	163
Eco47I	GGWCC	3 cut(s)	518, 1400, 1458
Eco53kI	GAGCTC	1 cut(s)	1179
Eco72I	CACGTG	1 cut(s)	1643
Eco88I	CYCGRG	1 cut(s)	843
EcoICRI	GAGCTC	1 cut(s)	1179
EcoNI	CCTNNNNNAGG	1 cut(s)	1799
EcoO109I	RGGNCCY	1 cut(s)	1400
EcoRI	GAATTC	2 cut(s)	1160, 1823
EcoRII	CCWGG	4 cut(s)	145, 479, 1598, 1827
EcoRV	GATATC	1 cut(s)	163
EcoT14I	CCWWGG	2 cut(s)	1044, 1101
EcoT22I	ATGCAT	1 cut(s)	1372
EcoT38I	GRGCYC	1 cut(s)	1181
EgeI	GGCGCC	1 cut(s)	1042
EheI	GGCGCC	1 cut(s)	1042
ErhI	CCWWGG	2 cut(s)	1044, 1101
FalI	AAGNNNNNCTT	2 cut(s)	73, 105
FaqI	GGGAC	1 cut(s)	1544
FauNDI	CATATG	2 cut(s)	958, 1657
Fnu4HI	GCNGC	5 cut(s)	139, 782, 1002, 1928, 2118
FokI	GGATG	8 cut(s)	269, 287, 483, 773, 823, 1602, 1784, 2305
FriOI	GRGCYC	1 cut(s)	1181
Fsp4HI	GCNGC	5 cut(s)	139, 782, 1002, 1928, 2118
FspBI	CTAG	2 cut(s)	330, 1058
FspI	TGCGCA	1 cut(s)	2016
GlaI	GCGC	6 cut(s)	235, 1042, 1859, 2016, 2043, 2315
GluI	GCNGC	5 cut(s)	139, 782, 1002, 1928, 2118
HaeII	RGCGCY	2 cut(s)	1044, 1861
HaeIII	GGCC	3 cut(s)	1561, 1683, 2172
HapII	CCGG	2 cut(s)	707, 1731
HgaI	GACGC	3 cut(s)	812, 919, 1541
HhaI	GCGC	6 cut(s)	236, 1043, 1860, 2017, 2044, 2316
Hin1I	GRCGYC	3 cut(s)	823, 930, 1041
Hin6I	GCGC	6 cut(s)	234, 1041, 1858, 2015, 2042, 2314
HinP1I	GCGC	6 cut(s)	234, 1041, 1858, 2015, 2042, 2314
HindIII	AAGCTT	1 cut(s)	557
HinfI	GANTC	7 cut(s)	476, 1016, 1302, 1314, 1886, 1897, 2281
HpaII	CCGG	2 cut(s)	707, 1731
HphI	GGTGA	9 cut(s)	221, 318, 355, 593, 695, 1402, 1745, 2000, 2272
Hpy166II	GTNNAC	6 cut(s)	363, 640, 766, 1063, 1952, 2224
Hpy188I	TCNGA	6 cut(s)	132, 160, 625, 1199, 1963, 2235
Hpy188III	TCNNGA	9 cut(s)	473, 910, 1220, 1477, 1487, 1909, 2111, 2181, 2203
Hpy8I	GTNNAC	6 cut(s)	363, 640, 766, 1063, 1952, 2224
Hpy99I	CGWCG	1 cut(s)	935
HpyAV	CCTTC	6 cut(s)	7, 680, 1413, 1421, 1906, 2178
HpyCH4III	ACNGT	6 cut(s)	187, 293, 635, 1267, 1967, 2239
HpyCH4IV	ACGT	5 cut(s)	418, 588, 873, 1278, 1642
HpyF10VI	GCNNNNNNNGC	9 cut(s)	790, 799, 1164, 1855, 1924, 2035, 2048, 2196, 2307
HpyF3I	CTNAG	6 cut(s)	65, 99, 777, 1066, 1191, 2245
HpySE526I	ACGT	5 cut(s)	418, 588, 873, 1278, 1642
Hsp92I	GRCGYC	3 cut(s)	823, 930, 1041
HspAI	GCGC	6 cut(s)	234, 1041, 1858, 2015, 2042, 2314
KasI	GGCGCC	1 cut(s)	1040
LguI	GCTCTTC	2 cut(s)	432, 1169
Lsp1109I	GCAGC	3 cut(s)	988, 1914, 2104
LweI	GCATC	5 cut(s)	586, 793, 1315, 1762, 2208
MaeI	CTAG	2 cut(s)	330, 1058
MaeII	ACGT	5 cut(s)	418, 588, 873, 1278, 1642
MaeIII	GTNAC	5 cut(s)	217, 311, 551, 1643, 1664
MflI	RGATCY	3 cut(s)	771, 1497, 2107
MhlI	GDGCHC	1 cut(s)	1181
Mly113I	GGCGCC	1 cut(s)	1041
MlyI	GAGTC	2 cut(s)	1296, 1323
MmeI	TCCRAC	4 cut(s)	222, 738, 1986, 2258
Mph1103I	ATGCAT	1 cut(s)	1372
MroXI	GAANNNNTTC	1 cut(s)	111
MseI	TTAA	8 cut(s)	663, 695, 833, 837, 1374, 1545, 1572, 1838
MslI	CAYNNNNRTG	4 cut(s)	1323, 1383, 1660, 2043
MspI	CCGG	2 cut(s)	707, 1731
MspR9I	CCNGG	5 cut(s)	147, 481, 1600, 1731, 1829
MvaI	CCWGG	4 cut(s)	147, 481, 1600, 1829
MvnI	CGCG	4 cut(s)	234, 236, 2044, 2316
MwoI	GCNNNNNNNGC	9 cut(s)	790, 799, 1164, 1855, 1924, 2035, 2048, 2196, 2307
NarI	GGCGCC	1 cut(s)	1041
NciI	CCSGG	1 cut(s)	1731
NdeI	CATATG	2 cut(s)	958, 1657
NlaIV	GGNNCC	5 cut(s)	773, 1042, 1401, 1432, 1682
NmuCI	GTSAC	3 cut(s)	311, 551, 1643
NsbI	TGCGCA	1 cut(s)	2016
NsiI	ATGCAT	1 cut(s)	1372
NspI	RCATGY	3 cut(s)	1849, 2042, 2314
NspV	TTCGAA	1 cut(s)	1889
PacI	TTAATTAA	1 cut(s)	837
PaeI	GCATGC	3 cut(s)	1849, 2042, 2314
PaeR7I	CTCGAG	1 cut(s)	843
PciSI	GCTCTTC	2 cut(s)	432, 1169
PcsI	WCGNNNNNNNCGW	1 cut(s)	639
PdmI	GAANNNNTTC	1 cut(s)	111
PfeI	GAWTC	5 cut(s)	476, 1016, 1886, 1897, 2281
PflMI	CCANNNNNTGG	1 cut(s)	1107
PfoI	TCCNGGA	2 cut(s)	479, 1598
PkrI	GCNGC	5 cut(s)	140, 783, 1003, 1929, 2119
PleI	GAGTC	2 cut(s)	1296, 1322
PluTI	GGCGCC	1 cut(s)	1044
PmaCI	CACGTG	1 cut(s)	1643
PmlI	CACGTG	1 cut(s)	1643
PpsI	GAGTC	2 cut(s)	1296, 1322
Ppu21I	YACGTR	2 cut(s)	419, 1643
PpuMI	RGGWCCY	1 cut(s)	1400
PsiI	TTATAA	2 cut(s)	753, 1854
Psp124BI	GAGCTC	1 cut(s)	1181
Psp1406I	AACGTT	1 cut(s)	873
Psp5II	RGGWCCY	1 cut(s)	1400
Psp6I	CCWGG	4 cut(s)	145, 479, 1598, 1827
PspCI	CACGTG	1 cut(s)	1643
PspGI	CCWGG	4 cut(s)	145, 479, 1598, 1827
PspN4I	GGNNCC	5 cut(s)	773, 1042, 1401, 1432, 1682
PspPI	GGNCC	5 cut(s)	518, 1400, 1458, 1681, 2171
PspPPI	RGGWCCY	1 cut(s)	1400
PspXI	VCTCGAGB	1 cut(s)	843
PstNI	CAGNNNCTG	1 cut(s)	1073
PsuI	RGATCY	3 cut(s)	771, 1497, 2107
RsaI	GTAC	8 cut(s)	29, 86, 151, 396, 571, 1206, 1237, 1702
RsaNI	GTAC	8 cut(s)	28, 85, 150, 395, 570, 1205, 1236, 1701
RseI	CAYNNNNRTG	4 cut(s)	1323, 1383, 1660, 2043
SacI	GAGCTC	1 cut(s)	1181
SapI	GCTCTTC	2 cut(s)	432, 1169
SaqAI	TTAA	8 cut(s)	663, 695, 833, 837, 1374, 1545, 1572, 1838
SatI	GCNGC	5 cut(s)	139, 782, 1002, 1928, 2118
Sau96I	GGNCC	5 cut(s)	518, 1400, 1458, 1681, 2171
SchI	GAGTC	2 cut(s)	1296, 1323
ScrFI	CCNGG	5 cut(s)	147, 481, 1600, 1731, 1829
SduI	GDGCHC	1 cut(s)	1181
SfaNI	GCATC	5 cut(s)	586, 793, 1315, 1762, 2208
SfcI	CTRYAG	1 cut(s)	354
SfoI	GGCGCC	1 cut(s)	1042
Sfr274I	CTCGAG	1 cut(s)	843
SfuI	TTCGAA	1 cut(s)	1889
SinI	GGWCC	3 cut(s)	518, 1400, 1458
SlaI	CTCGAG	1 cut(s)	843
SmiMI	CAYNNNNRTG	4 cut(s)	1323, 1383, 1660, 2043
SmlI	CTYRAG	3 cut(s)	843, 1487, 2111
SmoI	CTYRAG	3 cut(s)	843, 1487, 2111
SphI	GCATGC	3 cut(s)	1849, 2042, 2314
SsiI	CCGC	7 cut(s)	136, 139, 232, 434, 782, 1004, 1293
SspDI	GGCGCC	1 cut(s)	1040
SspI	AATATT	1 cut(s)	1153
SspMI	CTAG	2 cut(s)	330, 1058
SstI	GAGCTC	1 cut(s)	1181
StyD4I	CCNGG	5 cut(s)	145, 479, 1598, 1729, 1827
StyI	CCWWGG	2 cut(s)	1044, 1101
TaaI	ACNGT	6 cut(s)	187, 293, 635, 1267, 1967, 2239
TaiI	ACGT	5 cut(s)	421, 591, 876, 1281, 1645
TaqII	GACCGA	1 cut(s)	60
TatI	WGTACW	3 cut(s)	27, 1204, 1235
TauI	GCSGC	2 cut(s)	141, 784
TfiI	GAWTC	5 cut(s)	476, 1016, 1886, 1897, 2281
Tru1I	TTAA	8 cut(s)	663, 695, 833, 837, 1374, 1545, 1572, 1838
Tru9I	TTAA	8 cut(s)	663, 695, 833, 837, 1374, 1545, 1572, 1838
TscAI	CASTG	3 cut(s)	283, 942, 1792
TseFI	GTSAC	3 cut(s)	311, 551, 1643
TseI	GCWGC	3 cut(s)	1001, 1927, 2117
Tsp45I	GTSAC	3 cut(s)	311, 551, 1643
TspDTI	ATGAA	9 cut(s)	23, 53, 738, 807, 1174, 1401, 2048, 2056, 2120
TspGWI	ACGGA	3 cut(s)	293, 510, 1471
TspRI	CASTG	3 cut(s)	283, 942, 1792
Van91I	CCANNNNNTGG	1 cut(s)	1107
VpaK11BI	GGWCC	3 cut(s)	518, 1400, 1458
XagI	CCTNNNNNAGG	1 cut(s)	1799
XapI	RAATTY	8 cut(s)	154, 659, 677, 860, 914, 1160, 1541, 1823
XceI	RCATGY	3 cut(s)	1849, 2042, 2314
XcmI	CCANNNNNNNNNTGG	1 cut(s)	450
XhoI	CTCGAG	1 cut(s)	843
XmnI	GAANNNNTTC	1 cut(s)	111
XspI	CTAG	2 cut(s)	330, 1058
Zsp2I	ATGCAT	1 cut(s)	1372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.