Rroxscaffold_1G00000870

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000563
Physical Location & Seq
Reverse (-)
1294825 .. 1295692
868 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00000870.1

Sequence Viewer

Length: 771 bp
ATGGTTAACTCTAAATACTATTATGATTCTGACGAGGAAGAATTTGAGGATGGAGTGGGTTATTGCTTTGATCCCACTGATCCAGACGGTCCATCCATTCGTCAATGCGACCACTGTAATGATGATGATTTGCTTCACAAGGCCGCTTTCACCCTCGAAGACAAATTTTATTCGTTTTATCCCTTTAAGGTTTTTGATCCTCTTCACCAACTCTGGAAACGACTTCTGCCTGATCCACCGTATTTTAAAGAAGTTTCTGCTCTAGGCCACAAGCTCGTGTTTAGTACTGGGAAGCAGCCATGCCTGTTCGACACTCGGGAAGAGAAATGGGAAGATTGGCCAAAGAGAAATAAAGAAATTGAAAAATTCGTGGACGGTAAGTATCTAATATTTGATCATGATGACATCCGGACTACCCATAGGATGCAAGCAGCTGTAGAACATGAGGGATCTTTAATTACTCATGTTGGATATAGACTTGCTGCTTTTCGGTGGGATTCAAATGGAATCCCAAAGCTGTATCGGGTGCTGAATGAGCTTGACGGGGTATTCCATCCTGGACTATACATTAACGGAGTGTTTCGAGTTTCCATCTCAAACGACCTTGATGGCAATCCAGTCCTCTCTGCCCAAGTTGAGGCTGCGGAATTGTTTTCCTCTGAGAAATCAGAACGTAACAAATCAGCTTTCGCCTTGTGCCATCAGCCGAACCAGTATGAGAACAAAATCAGAGTTATTCGTCATCCTTCCCAACGCACTGTTGCTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

256

Amino Acids

29.76

Weight (kDa)

5.46

Isoelectric Point (pI)

39.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 408
AciI CCGC 2 cut(s) 144, 644
AclWI GGATC 5 cut(s) 65, 74, 191, 227, 457
AcoI YGGCCR 1 cut(s) 338
AcsI RAATTY 3 cut(s) 41, 164, 365
AfaI GTAC 1 cut(s) 286
AfiI CCNNNNNNNGG 1 cut(s) 637
AgsI TTSAA 2 cut(s) 362, 501
AjnI CCWGG 1 cut(s) 556
AluBI AGCT 5 cut(s) 274, 434, 517, 538, 686
AluI AGCT 5 cut(s) 274, 434, 517, 538, 686
AlwI GGATC 5 cut(s) 65, 74, 191, 227, 457
Ama87I CYCGRG 1 cut(s) 315
Aor13HI TCCGGA 1 cut(s) 408
AoxI GGCC 3 cut(s) 141, 265, 338
ApeKI GCWGC 4 cut(s) 295, 431, 482, 641
ApoI RAATTY 3 cut(s) 41, 164, 365
AspS9I GGNCC 1 cut(s) 89
AsuHPI GGTGA 2 cut(s) 142, 197
AvaI CYCGRG 1 cut(s) 315
AvaII GGWCC 1 cut(s) 89
BalI TGGCCA 1 cut(s) 340
BauI CACGAG 1 cut(s) 275
BbsI GAAGAC 1 cut(s) 165
BbvI GCAGC 4 cut(s) 307, 443, 469, 628
BccI CCATC 6 cut(s) 44, 100, 561, 599, 602, 708
BciT130I CCWGG 1 cut(s) 558
BclI TGATCA 1 cut(s) 394
BfaI CTAG 1 cut(s) 263
BfmI CTRYAG 1 cut(s) 435
BisI GCNGC 5 cut(s) 144, 296, 432, 483, 642
BlsI GCNGC 5 cut(s) 145, 297, 433, 484, 643
BmcAI AGTACT 1 cut(s) 286
Bme1390I CCNGG 1 cut(s) 558
Bme18I GGWCC 1 cut(s) 89
BmeT110I CYCGRG 1 cut(s) 315
BmgT120I GGNCC 1 cut(s) 89
BmrFI CCNGG 1 cut(s) 558
BmrI ACTGGG 1 cut(s) 297
BmsI GCATC 1 cut(s) 414
BmuI ACTGGG 1 cut(s) 297
BpiI GAAGAC 1 cut(s) 165
BsaBI GATNNNNATC 1 cut(s) 612
BsaWI WCCGGW 1 cut(s) 408
Bsc4I CCNNNNNNNGG 1 cut(s) 637
Bse1I ACTGG 3 cut(s) 292, 617, 712
Bse8I GATNNNNATC 1 cut(s) 612
BseAI TCCGGA 1 cut(s) 408
BseBI CCWGG 1 cut(s) 558
BseGI GGATG 6 cut(s) 55, 92, 405, 429, 553, 742
BseJI GATNNNNATC 1 cut(s) 612
BseLI CCNNNNNNNGG 1 cut(s) 637
BseMII CTCAG 1 cut(s) 651
BseNI ACTGG 3 cut(s) 292, 617, 712
BseXI GCAGC 4 cut(s) 307, 443, 469, 628
BshFI GGCC 3 cut(s) 143, 267, 340
BsiHKCI CYCGRG 1 cut(s) 315
BsiSI CCGG 1 cut(s) 409
BslI CCNNNNNNNGG 1 cut(s) 637
BsnI GGCC 3 cut(s) 143, 267, 340
BsoBI CYCGRG 1 cut(s) 315
Bsp13I TCCGGA 1 cut(s) 408
Bsp143I GATC 6 cut(s) 70, 79, 196, 232, 394, 449
BspACI CCGC 2 cut(s) 144, 644
BspANI GGCC 3 cut(s) 143, 267, 340
BspCNI CTCAG 1 cut(s) 652
BspEI TCCGGA 1 cut(s) 408
BspHI TCATGA 2 cut(s) 397, 767
BspPI GGATC 5 cut(s) 65, 74, 191, 227, 457
BsrI ACTGG 3 cut(s) 292, 617, 712
BssMI GATC 6 cut(s) 70, 79, 196, 232, 394, 449
BssSI CACGAG 1 cut(s) 275
Bst2BI CACGAG 1 cut(s) 275
Bst2UI CCWGG 1 cut(s) 558
Bst4CI ACNGT 5 cut(s) 89, 116, 240, 377, 760
Bst6I CTCTTC 2 cut(s) 207, 315
BstC8I GCNNGC 1 cut(s) 429
BstDEI CTNAG 1 cut(s) 660
BstF5I GGATG 6 cut(s) 55, 92, 405, 429, 553, 742
BstKTI GATC 6 cut(s) 73, 82, 199, 235, 397, 452
BstMBI GATC 6 cut(s) 70, 79, 196, 232, 394, 449
BstMWI GCNNNNNNNGC 1 cut(s) 535
BstNI CCWGG 1 cut(s) 558
BstSCI CCNGG 1 cut(s) 556
BstSFI CTRYAG 1 cut(s) 435
BstV1I GCAGC 4 cut(s) 307, 443, 469, 628
BstV2I GAAGAC 1 cut(s) 165
BstX2I RGATCY 1 cut(s) 449
BstYI RGATCY 1 cut(s) 449
BsuRI GGCC 3 cut(s) 143, 267, 340
BtsCI GGATG 6 cut(s) 55, 92, 405, 429, 553, 742
BtsIMutI CAGTG 3 cut(s) 75, 112, 756
Cac8I GCNNGC 1 cut(s) 429
CciI TCATGA 2 cut(s) 397, 767
Cfr13I GGNCC 1 cut(s) 89
Csp6I GTAC 1 cut(s) 285
CviAII CATG 5 cut(s) 300, 398, 443, 464, 768
CviQI GTAC 1 cut(s) 285
DdeI CTNAG 1 cut(s) 660
DpnI GATC 6 cut(s) 72, 81, 198, 234, 396, 451
DpnII GATC 6 cut(s) 70, 79, 196, 232, 394, 449
DraI TTTAAA 1 cut(s) 247
EaeI YGGCCR 1 cut(s) 338
Eam1104I CTCTTC 2 cut(s) 207, 315
EarI CTCTTC 2 cut(s) 207, 315
Eco47I GGWCC 1 cut(s) 89
Eco88I CYCGRG 1 cut(s) 315
EcoRII CCWGG 1 cut(s) 556
FaeI CATG 5 cut(s) 303, 401, 446, 467, 771
FatI CATG 5 cut(s) 299, 397, 442, 463, 767
FbaI TGATCA 1 cut(s) 394
Fnu4HI GCNGC 5 cut(s) 144, 296, 432, 483, 642
FokI GGATG 6 cut(s) 62, 79, 392, 436, 540, 729
Fsp4HI GCNGC 5 cut(s) 144, 296, 432, 483, 642
FspBI CTAG 1 cut(s) 263
GluI GCNGC 5 cut(s) 144, 296, 432, 483, 642
HaeIII GGCC 3 cut(s) 143, 267, 340
HapII CCGG 1 cut(s) 409
Hin1II CATG 5 cut(s) 303, 401, 446, 467, 771
HincII GTYRAC 1 cut(s) 7
HindII GTYRAC 1 cut(s) 7
HinfI GANTC 3 cut(s) 26, 497, 507
HpaI GTTAAC 1 cut(s) 7
HpaII CCGG 1 cut(s) 409
HphI GGTGA 2 cut(s) 142, 197
Hpy166II GTNNAC 2 cut(s) 7, 373
Hpy188I TCNGA 4 cut(s) 31, 661, 670, 731
Hpy188III TCNNGA 6 cut(s) 83, 214, 317, 398, 409, 768
Hpy8I GTNNAC 2 cut(s) 7, 373
HpyAV CCTTC 1 cut(s) 756
HpyCH4III ACNGT 5 cut(s) 89, 116, 240, 377, 760
HpyCH4IV ACGT 1 cut(s) 673
HpyCH4V TGCA 1 cut(s) 427
HpyF10VI GCNNNNNNNGC 1 cut(s) 535
HpyF3I CTNAG 1 cut(s) 660
HpySE526I ACGT 1 cut(s) 673
Hsp92II CATG 5 cut(s) 303, 401, 446, 467, 771
Kpn2I TCCGGA 1 cut(s) 408
Ksp22I TGATCA 1 cut(s) 394
KspAI GTTAAC 1 cut(s) 7
Kzo9I GATC 6 cut(s) 70, 79, 196, 232, 394, 449
Lsp1109I GCAGC 4 cut(s) 307, 443, 469, 628
LweI GCATC 1 cut(s) 414
MaeI CTAG 1 cut(s) 263
MaeII ACGT 1 cut(s) 673
MaeIII GTNAC 1 cut(s) 674
MalI GATC 6 cut(s) 72, 81, 198, 234, 396, 451
MboI GATC 6 cut(s) 70, 79, 196, 232, 394, 449
MboII GAAGA 5 cut(s) 50, 170, 194, 332, 344
MflI RGATCY 1 cut(s) 449
MlsI TGGCCA 1 cut(s) 340
MluCI AATT 6 cut(s) 41, 164, 357, 365, 456, 647
MluNI TGGCCA 1 cut(s) 340
MmeI TCCRAC 1 cut(s) 448
MnlI CCTC 8 cut(s) 28, 40, 164, 210, 439, 631, 632, 667
Mox20I TGGCCA 1 cut(s) 340
MroI TCCGGA 1 cut(s) 408
MscI TGGCCA 1 cut(s) 340
MseI TTAA 5 cut(s) 6, 186, 246, 455, 570
MslI CAYNNNNRTG 1 cut(s) 117
Msp20I TGGCCA 1 cut(s) 340
MspA1I CMGCKG 1 cut(s) 434
MspI CCGG 1 cut(s) 409
MspR9I CCNGG 1 cut(s) 558
MvaI CCWGG 1 cut(s) 558
MwoI GCNNNNNNNGC 1 cut(s) 535
NdeII GATC 6 cut(s) 70, 79, 196, 232, 394, 449
NlaIII CATG 5 cut(s) 303, 401, 446, 467, 771
PagI TCATGA 2 cut(s) 397, 767
PfeI GAWTC 3 cut(s) 26, 497, 507
PfoI TCCNGGA 1 cut(s) 556
PkrI GCNGC 5 cut(s) 145, 297, 433, 484, 643
Psp6I CCWGG 1 cut(s) 556
PspGI CCWGG 1 cut(s) 556
PspPI GGNCC 1 cut(s) 89
PsuI RGATCY 1 cut(s) 449
PvuII CAGCTG 1 cut(s) 434
RsaI GTAC 1 cut(s) 286
RsaNI GTAC 1 cut(s) 285
RseI CAYNNNNRTG 1 cut(s) 117
SaqAI TTAA 5 cut(s) 6, 186, 246, 455, 570
SatI GCNGC 5 cut(s) 144, 296, 432, 483, 642
Sau3AI GATC 6 cut(s) 70, 79, 196, 232, 394, 449
Sau96I GGNCC 1 cut(s) 89
ScaI AGTACT 1 cut(s) 286
ScrFI CCNGG 1 cut(s) 558
SetI ASST 8 cut(s) 192, 276, 436, 519, 540, 606, 676, 688
SfaNI GCATC 1 cut(s) 414
SfcI CTRYAG 1 cut(s) 435
SinI GGWCC 1 cut(s) 89
SmiMI CAYNNNNRTG 1 cut(s) 117
Sse9I AATT 6 cut(s) 41, 164, 357, 365, 456, 647
SsiI CCGC 2 cut(s) 144, 644
SspI AATATT 1 cut(s) 390
SspMI CTAG 1 cut(s) 263
StyD4I CCNGG 1 cut(s) 556
TaaI ACNGT 5 cut(s) 89, 116, 240, 377, 760
TaiI ACGT 1 cut(s) 676
TaqI TCGA 3 cut(s) 156, 309, 583
TasI AATT 6 cut(s) 41, 164, 357, 365, 456, 647
TatI WGTACW 1 cut(s) 284
TauI GCSGC 1 cut(s) 146
TfiI GAWTC 3 cut(s) 26, 497, 507
Tru1I TTAA 5 cut(s) 6, 186, 246, 455, 570
Tru9I TTAA 5 cut(s) 6, 186, 246, 455, 570
TscAI CASTG 3 cut(s) 82, 119, 763
TseI GCWGC 4 cut(s) 295, 431, 482, 641
TspDTI ATGAA 1 cut(s) 756
TspGWI ACGGA 1 cut(s) 588
TspRI CASTG 3 cut(s) 82, 119, 763
VpaK11BI GGWCC 1 cut(s) 89
XapI RAATTY 3 cut(s) 41, 164, 365
XspI CTAG 1 cut(s) 263
ZrmI AGTACT 1 cut(s) 286
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.