Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0000563

Physical Location & Seq

Genomic Coordinates Reverse (-)

30278709 .. 30280373

Gene Structure 1665 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g30861.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGTGGTTTGAGAAGAATGGATATATCGATGAAATATTTATGGCGATGAAACCACTAGAGCCAAAGAAGGAATGGTTTTTGTACCTGATATGCCGTCTAAATATTGATGAATTCTGCAAAAAGAACTCTCCGAAGCCTCAGTTTGAAGTTGTGCATGATTTTTATCCTAACGACGAATATGAAGATACAACTCTTCCGCATGGAATGCAACCTATTGTCGTGGATTCCAAAGTATACATGGTTGGTGGTGAATCCAGAAGAACGGGTGACATCCCTGAAAGCAATGAGTCCGATGAAGATGATGACAATTCCGGGGACGGTGAAATAAATAATCTAGATGATCAAGATCGTGCCAGACGTGCGTATAATAAAACTCGTCTCCTCAACCTAGATGTTTTTGCCTTTGATCCGGAGGGTCCCACCATCAGTCTCAGCGACGGCCGTACCATTCCGAGGAGGATAATTGATCCGAGATTGATTGATCCAAAGACCTTGTCTGGTCCTATAGTTTTCACCCTAGAGAACAAAATCTATGTTATGGCAAGAGCACCATACTCGGGCGATGAGAAAGACATTGATCATCAGCCAACCCTATTCAAGGTTTTTGATCCCCTTCACCAATTTTGGAAAGAGCTCTCTTGTCCTCCCCACTGTGATTGTGATTATGATTATGATGATGATCACTCATTCCATGATCACAGCACTTGGGGTCACAATCTTTTAGTTCGCAATAATAGTTGCGGTTTACACCTTTTTGACACACACCAAGAGAGATGGGAAGATTTGCCAAGAGAAAAAGGAGACGAACTTGCGTTTGATACAGCTGTTGTAGAATTCGAGGGCTTTTTGATTGGTGTAAAACGCCGTCGGATCGGTGTTTATCAGTTGGATGAGAATGGTATGCCAAAGCTGAGTCGAGACCTGCATGAGCTTAAGGGGATATTCTGTCCTTTTTTACTTGTCAGAAACTGTGTTATGGGCAAGTGCGGCGGTGGCCGGATGTGGTTGGTGTATACCGGCAAGGATCTTATGGAGTTTTACTATACACGTGTAGCTGTGTTTCGAGTTTCCATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006479 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016278 GO:0016279 GO:0016740 GO:0016741 GO:0018022 GO:0018023 GO:0018026 GO:0018193 GO:0018205 GO:0019538 GO:0032259 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rubis-subs-bind SET

Protein Analysis

359

Amino Acids

41.7

Weight (kDa)

4.97

Isoelectric Point (pI)

39.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000563)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g40701 FvH4_3g40701 FvH4_3g42210 FvH4_4g30821 FvH4_4g30830 FvH4_4g30861 FvH4_4g30870 FvH4_4g30880 FvH4_4g30890 FvH4_6g30071 FvH4_6g44331 FvH4_6g44332 FvH4_6g44333
malus_domestica	MD15G1041200.v1.1 MD15G1041700.v1.1 MD15G1401000.v1.1
prunus_persica	Prupe.5G008800_v2.0.a1 Prupe.5G157900_v2.0.a1
pyrus_communis	pycom05g01010 pycom15g03820 pycom15g03830 pycom15g03850 pycom15g04240
rosa_chinensis	RchiOBHm_Chr5g0075231
rosa_laevigata	RLG00000008231 RLG00000008232 RLG00000008235 RLG00000008239 RLG00000008240 RLG00000008241 RLG00000021260 RLG00000021269 RLG00000036539 RLG00000036540 RLG00000037046
rosa_multiflora	Rmu_sc0000955.1_g000047 Rmu_sc0006420.1_g000034
rosa_roxburghii	Rroxscaffold_1G00000870 Rroxscaffold_1G00000880 Rroxscaffold_1G00006320 Rroxscaffold_2G00088990 Rroxscaffold_2G00089000 Rroxscaffold_2G00089010 Rroxscaffold_2G00089100 Rroxscaffold_5G00357190 Rroxscaffold_5G00357200
rosa_rugosa	Rorug04G0118300 Rorug04G0118400 Rorug05G0437400 Rorug05G0439900
rosa_samantha	Rh2AG552900 Rh2AG553000 Rh2BG566800 Rh2CG536900 Rh2DG575800 Rh2DG575900 Rh4AG177300 Rh4AG177400 Rh4AG178100 Rh4AG178300 Rh4AG178400 Rh4AG178500 Rh4BG177100 Rh4BG177200 Rh4BG177700 Rh4CG188300 Rh4CG188700 Rh4CG188800 Rh4CG189000 Rh4CG189100 Rh5AG494400 Rh5AG497000 Rh5AG537400 Rh5BG515800 Rh5BG515900 Rh5BG516000 Rh5CG539600 Rh5CG539700 Rh5CG539800 Rh5DG528600 Rh5DG528700
rosa_wichuraiana	Rw2G045740 Rw4G014830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	930
AccI	GTMKAC	2 cut(s)	234, 1013
AccIII	TCCGGA	1 cut(s)	409
AciI	CCGC	4 cut(s)	197, 741, 987, 990
AclWI	GGATC	6 cut(s)	401, 461, 476, 602, 878, 1032
AcoI	YGGCCR	2 cut(s)	439, 994
AcsI	RAATTY	2 cut(s)	110, 833
AcvI	CACGTG	1 cut(s)	1049
AfaI	GTAC	2 cut(s)	83, 445
AfiI	CCNNNNNNNGG	3 cut(s)	453, 557, 598
AflII	CTTAAG	1 cut(s)	932
AflIII	ACRYGT	2 cut(s)	1046, 1048
AgsI	TTSAA	2 cut(s)	146, 598
AjiI	CACGTC	1 cut(s)	359
AluBI	AGCT	5 cut(s)	634, 824, 910, 931, 1055
AluI	AGCT	5 cut(s)	634, 824, 910, 931, 1055
Alw21I	GWGCWC	2 cut(s)	550, 636
Alw26I	GTCTC	4 cut(s)	383, 434, 795, 912
AlwI	GGATC	6 cut(s)	401, 461, 476, 602, 878, 1032
AlwNI	CAGNNNCTG	1 cut(s)	969
Ama87I	CYCGRG	1 cut(s)	556
Aor13HI	TCCGGA	1 cut(s)	409
AoxI	GGCC	2 cut(s)	439, 994
ApoI	RAATTY	2 cut(s)	110, 833
ArsI	GACNNNNNNTTYG	2 cut(s)	479, 511
AspS9I	GGNCC	2 cut(s)	416, 500
AsuC2I	CCSGG	1 cut(s)	313
AsuHPI	GGTGA	5 cut(s)	260, 278, 332, 505, 608
AvaI	CYCGRG	1 cut(s)	556
AvaII	GGWCC	2 cut(s)	416, 500
BaeI	ACNNNNGTAYC	4 cut(s)	427, 460, 810, 843
BanII	GRGCYC	1 cut(s)	636
BbrPI	CACGTG	1 cut(s)	1049
Bbv12I	GWGCWC	2 cut(s)	550, 636
BccI	CCATC	2 cut(s)	431, 768
BceAI	ACGGC	4 cut(s)	78, 426, 454, 849
BcgI	CGANNNNNNTGC	2 cut(s)	537, 571
BclI	TGATCA	4 cut(s)	340, 577, 679, 694
BcnI	CCSGG	1 cut(s)	313
BcoDI	GTCTC	4 cut(s)	383, 434, 795, 912
BfaI	CTAG	5 cut(s)	56, 335, 389, 518, 1075
BfmI	CTRYAG	1 cut(s)	504
BfrI	CTTAAG	1 cut(s)	932
BfuAI	ACCTGC	1 cut(s)	930
BisI	GCNGC	1 cut(s)	988
BlsI	GCNGC	1 cut(s)	989
Bme1390I	CCNGG	1 cut(s)	313
Bme18I	GGWCC	2 cut(s)	416, 500
BmeT110I	CYCGRG	1 cut(s)	556
BmgBI	CACGTC	1 cut(s)	359
BmgT120I	GGNCC	2 cut(s)	416, 500
BmiI	GGNNCC	2 cut(s)	417, 418
BmrFI	CCNGG	1 cut(s)	313
BpuMI	CCSGG	1 cut(s)	313
Bsa29I	ATCGAT	1 cut(s)	27
BsaAI	YACGTR	1 cut(s)	1049
BsaBI	GATNNNNATC	3 cut(s)	162, 345, 678
BsaI	GGTCTC	1 cut(s)	912
BsaJI	CCNNGG	2 cut(s)	312, 452
BsaWI	WCCGGW	1 cut(s)	409
Bsc4I	CCNNNNNNNGG	3 cut(s)	453, 557, 598
Bse118I	RCCGGY	1 cut(s)	1016
Bse3DI	GCAATG	1 cut(s)	289
Bse8I	GATNNNNATC	3 cut(s)	162, 345, 678
BseAI	TCCGGA	1 cut(s)	409
BseCI	ATCGAT	1 cut(s)	27
BseDI	CCNNGG	2 cut(s)	312, 452
BseGI	GGATG	3 cut(s)	270, 895, 1005
BseJI	GATNNNNATC	3 cut(s)	162, 345, 678
BseLI	CCNNNNNNNGG	3 cut(s)	453, 557, 598
BseMI	GCAATG	1 cut(s)	289
BseMII	CTCAG	3 cut(s)	152, 445, 902
BseRI	GAGGAG	2 cut(s)	371, 469
BseX3I	CGGCCG	1 cut(s)	439
Bsh1285I	CGRYCG	1 cut(s)	442
BshFI	GGCC	2 cut(s)	441, 996
BshVI	ATCGAT	1 cut(s)	27
BsiEI	CGRYCG	1 cut(s)	442
BsiHKAI	GWGCWC	2 cut(s)	550, 636
BsiHKCI	CYCGRG	1 cut(s)	556
BsiSI	CCGG	4 cut(s)	312, 410, 997, 1017
BslFI	GGGAC	2 cut(s)	329, 402
BslI	CCNNNNNNNGG	3 cut(s)	453, 557, 598
BsmAI	GTCTC	4 cut(s)	383, 434, 795, 912
BsmBI	CGTCTC	2 cut(s)	383, 795
BsmFI	GGGAC	2 cut(s)	329, 402
BsmI	GAATGC	1 cut(s)	210
BsnI	GGCC	2 cut(s)	441, 996
Bso31I	GGTCTC	1 cut(s)	912
BsoBI	CYCGRG	1 cut(s)	556
Bsp1286I	GDGCHC	2 cut(s)	550, 636
Bsp13I	TCCGGA	1 cut(s)	409
BspACI	CCGC	4 cut(s)	197, 741, 987, 990
BspANI	GGCC	2 cut(s)	441, 996
BspCNI	CTCAG	3 cut(s)	151, 444, 903
BspDI	ATCGAT	1 cut(s)	27
BspEI	TCCGGA	1 cut(s)	409
BspLI	GGNNCC	2 cut(s)	417, 418
BspMI	ACCTGC	1 cut(s)	930
BspPI	GGATC	6 cut(s)	401, 461, 476, 602, 878, 1032
BspTI	CTTAAG	1 cut(s)	932
BspTNI	GGTCTC	1 cut(s)	912
BsrDI	GCAATG	1 cut(s)	289
BsrFI	RCCGGY	1 cut(s)	1016
BssAI	RCCGGY	1 cut(s)	1016
BssECI	CCNNGG	2 cut(s)	312, 452
BssNAI	GTATAC	2 cut(s)	235, 1014
Bst1107I	GTATAC	2 cut(s)	235, 1014
Bst4CI	ACNGT	3 cut(s)	320, 653, 971
Bst6I	CTCTTC	1 cut(s)	198
BstAFI	CTTAAG	1 cut(s)	932
BstAPI	GCANNNNNTGC	1 cut(s)	205
BstBAI	YACGTR	1 cut(s)	1049
BstDEI	CTNAG	3 cut(s)	138, 431, 911
BstENI	CCTNNNNNAGG	1 cut(s)	596
BstF5I	GGATG	3 cut(s)	270, 895, 1005
BstMAI	GTCTC	4 cut(s)	383, 434, 795, 912
BstMCI	CGRYCG	1 cut(s)	442
BstMWI	GCNNNNNNNGC	4 cut(s)	205, 359, 987, 993
BstSCI	CCNGG	1 cut(s)	311
BstSFI	CTRYAG	1 cut(s)	504
BstX2I	RGATCY	1 cut(s)	1024
BstYI	RGATCY	1 cut(s)	1024
BstZ17I	GTATAC	2 cut(s)	235, 1014
BstZI	CGGCCG	1 cut(s)	439
Bsu15I	ATCGAT	1 cut(s)	27
BsuRI	GGCC	2 cut(s)	441, 996
BsuTUI	ATCGAT	1 cut(s)	27
BtgZI	GCGATG	2 cut(s)	59, 576
BtrI	CACGTC	1 cut(s)	359
BtsCI	GGATG	3 cut(s)	270, 895, 1005
BtsIMutI	CAGTG	1 cut(s)	649
BveI	ACCTGC	1 cut(s)	930
CaiI	CAGNNNCTG	1 cut(s)	969
Cfr10I	RCCGGY	1 cut(s)	1016
Cfr13I	GGNCC	2 cut(s)	416, 500
ClaI	ATCGAT	1 cut(s)	27
Csp6I	GTAC	2 cut(s)	82, 444
CspCI	CAANNNNNGTGG	2 cut(s)	638, 673
CviAII	CATG	5 cut(s)	155, 200, 238, 692, 926
CviQI	GTAC	2 cut(s)	82, 444
DdeI	CTNAG	3 cut(s)	138, 431, 911
EaeI	YGGCCR	2 cut(s)	439, 994
EagI	CGGCCG	1 cut(s)	439
Eam1104I	CTCTTC	1 cut(s)	198
EarI	CTCTTC	1 cut(s)	198
Ecl136II	GAGCTC	1 cut(s)	634
EclXI	CGGCCG	1 cut(s)	439
Eco24I	GRGCYC	1 cut(s)	636
Eco31I	GGTCTC	1 cut(s)	912
Eco47I	GGWCC	2 cut(s)	416, 500
Eco52I	CGGCCG	1 cut(s)	439
Eco53kI	GAGCTC	1 cut(s)	634
Eco72I	CACGTG	1 cut(s)	1049
Eco88I	CYCGRG	1 cut(s)	556
EcoICRI	GAGCTC	1 cut(s)	634
EcoNI	CCTNNNNNAGG	1 cut(s)	596
EcoO109I	RGGNCCY	1 cut(s)	416
EcoRI	GAATTC	2 cut(s)	110, 833
EcoT38I	GRGCYC	1 cut(s)	636
Esp3I	CGTCTC	2 cut(s)	383, 795
FaeI	CATG	5 cut(s)	158, 203, 241, 695, 929
FaqI	GGGAC	2 cut(s)	329, 402
FatI	CATG	5 cut(s)	154, 199, 237, 691, 925
FbaI	TGATCA	4 cut(s)	340, 577, 679, 694
FblI	GTMKAC	2 cut(s)	234, 1013
Fnu4HI	GCNGC	1 cut(s)	988
FokI	GGATG	3 cut(s)	257, 902, 1012
FriOI	GRGCYC	1 cut(s)	636
Fsp4HI	GCNGC	1 cut(s)	988
FspBI	CTAG	5 cut(s)	56, 335, 389, 518, 1075
GluI	GCNGC	1 cut(s)	988
HaeIII	GGCC	2 cut(s)	441, 996
HapII	CCGG	4 cut(s)	312, 410, 997, 1017
Hin1II	CATG	5 cut(s)	158, 203, 241, 695, 929
HinfI	GANTC	4 cut(s)	224, 251, 287, 913
HpaII	CCGG	4 cut(s)	312, 410, 997, 1017
HphI	GGTGA	5 cut(s)	260, 278, 332, 505, 608
Hpy166II	GTNNAC	3 cut(s)	235, 746, 1014
Hpy188I	TCNGA	6 cut(s)	132, 292, 453, 471, 870, 965
Hpy188III	TCNNGA	5 cut(s)	255, 335, 344, 410, 917
Hpy8I	GTNNAC	3 cut(s)	235, 746, 1014
Hpy99I	CGWCG	3 cut(s)	176, 440, 870
HpyAV	CCTTC	2 cut(s)	61, 623
HpyCH4III	ACNGT	3 cut(s)	320, 653, 971
HpyCH4IV	ACGT	2 cut(s)	358, 1048
HpyCH4V	TGCA	4 cut(s)	117, 154, 208, 925
HpyF10VI	GCNNNNNNNGC	4 cut(s)	205, 359, 987, 993
HpyF3I	CTNAG	3 cut(s)	138, 431, 911
HpySE526I	ACGT	2 cut(s)	358, 1048
Hsp92II	CATG	5 cut(s)	158, 203, 241, 695, 929
KflI	GGGWCCC	1 cut(s)	416
Kpn2I	TCCGGA	1 cut(s)	409
Ksp22I	TGATCA	4 cut(s)	340, 577, 679, 694
MaeI	CTAG	5 cut(s)	56, 335, 389, 518, 1075
MaeII	ACGT	2 cut(s)	358, 1048
MaeIII	GTNAC	2 cut(s)	266, 710
MboII	GAAGA	6 cut(s)	25, 185, 194, 270, 308, 791
MflI	RGATCY	1 cut(s)	1024
MhlI	GDGCHC	2 cut(s)	550, 636
MluCI	AATT	5 cut(s)	110, 307, 462, 620, 833
MlyI	GAGTC	2 cut(s)	296, 922
MmeI	TCCRAC	2 cut(s)	848, 867
MnlI	CCTC	7 cut(s)	147, 392, 406, 447, 450, 654, 832
MroI	TCCGGA	1 cut(s)	409
MseI	TTAA	1 cut(s)	933
MspA1I	CMGCKG	1 cut(s)	824
MspCI	CTTAAG	1 cut(s)	932
MspI	CCGG	4 cut(s)	312, 410, 997, 1017
MspR9I	CCNGG	1 cut(s)	313
Mva1269I	GAATGC	1 cut(s)	210
MwoI	GCNNNNNNNGC	4 cut(s)	205, 359, 987, 993
NciI	CCSGG	1 cut(s)	313
NlaIII	CATG	5 cut(s)	158, 203, 241, 695, 929
NlaIV	GGNNCC	2 cut(s)	417, 418
NmuCI	GTSAC	2 cut(s)	266, 710
PcsI	WCGNNNNNNNCGW	1 cut(s)	355
PctI	GAATGC	1 cut(s)	210
PfeI	GAWTC	2 cut(s)	224, 251
PflFI	GACNNNGTC	1 cut(s)	493
PkrI	GCNGC	1 cut(s)	989
PleI	GAGTC	2 cut(s)	295, 921
PmaCI	CACGTG	1 cut(s)	1049
PmlI	CACGTG	1 cut(s)	1049
PpsI	GAGTC	2 cut(s)	295, 921
Ppu21I	YACGTR	1 cut(s)	1049
PpuMI	RGGWCCY	1 cut(s)	416
Psp124BI	GAGCTC	1 cut(s)	636
Psp5II	RGGWCCY	1 cut(s)	416
PspCI	CACGTG	1 cut(s)	1049
PspN4I	GGNNCC	2 cut(s)	417, 418
PspPI	GGNCC	2 cut(s)	416, 500
PspPPI	RGGWCCY	1 cut(s)	416
PstNI	CAGNNNCTG	1 cut(s)	969
PsuI	RGATCY	1 cut(s)	1024
PsyI	GACNNNGTC	1 cut(s)	493
PvuII	CAGCTG	1 cut(s)	824
RsaI	GTAC	2 cut(s)	83, 445
RsaNI	GTAC	2 cut(s)	82, 444
SacI	GAGCTC	1 cut(s)	636
SaqAI	TTAA	1 cut(s)	933
SatI	GCNGC	1 cut(s)	988
Sau96I	GGNCC	2 cut(s)	416, 500
SchI	GAGTC	2 cut(s)	296, 922
ScrFI	CCNGG	1 cut(s)	313
SduI	GDGCHC	2 cut(s)	550, 636
SfcI	CTRYAG	1 cut(s)	504
SinI	GGWCC	2 cut(s)	416, 500
SmlI	CTYRAG	1 cut(s)	932
SmoI	CTYRAG	1 cut(s)	932
Sse9I	AATT	5 cut(s)	110, 307, 462, 620, 833
SsiI	CCGC	4 cut(s)	197, 741, 987, 990
SspI	AATATT	2 cut(s)	36, 103
SspMI	CTAG	5 cut(s)	56, 335, 389, 518, 1075
SstI	GAGCTC	1 cut(s)	636
StyD4I	CCNGG	1 cut(s)	311
TaaI	ACNGT	3 cut(s)	320, 653, 971
TaiI	ACGT	2 cut(s)	361, 1051
TaqI	TCGA	4 cut(s)	27, 837, 916, 1063
TasI	AATT	5 cut(s)	110, 307, 462, 620, 833
TauI	GCSGC	1 cut(s)	990
TfiI	GAWTC	2 cut(s)	224, 251
Tru1I	TTAA	1 cut(s)	933
Tru9I	TTAA	1 cut(s)	933
TscAI	CASTG	1 cut(s)	656
TseFI	GTSAC	2 cut(s)	266, 710
Tsp45I	GTSAC	2 cut(s)	266, 710
TspDTI	ATGAA	5 cut(s)	45, 62, 123, 195, 309
TspRI	CASTG	1 cut(s)	656
Tth111I	GACNNNGTC	1 cut(s)	493
Vha464I	CTTAAG	1 cut(s)	932
VpaK11BI	GGWCC	2 cut(s)	416, 500
XagI	CCTNNNNNAGG	1 cut(s)	596
XapI	RAATTY	2 cut(s)	110, 833
XbaI	TCTAGA	1 cut(s)	334
XcmI	CCANNNNNNNNNTGG	2 cut(s)	69, 235
XmiI	GTMKAC	2 cut(s)	234, 1013
XspI	CTAG	5 cut(s)	56, 335, 389, 518, 1075

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.