Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0000563

Physical Location & Seq

Genomic Coordinates Reverse (-)

27613646 .. 27614894

Gene Structure 1249 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008239

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGCCGATGCCAGCACCACCGCCAAAGAAGGATTGGTTTTTGTACTTGATGACGGACGATCGAATATGCCGTCTAAATATTGATGAATTCTGCAAAAGGAATTCTCCAAAGCCTCAGTTTGAAGTTGTGCATGATTATTATCCTGATGGTGACTATCGTCTAAAGACAACTATTCCGCAGGGAATGCAACCTATAGTTGTGGGTTCCAAAGTGTATATGTTGGGGGGTGAATCCCCAAGAACGTGTAACCCTGAAATAAAGGATTCTGATTCGGATGATGATTCCGGTGGAAGTGAAAAATATAATTCTGAAAATGATTACCGTGATGACCATAAAAGGGTACGTCGGCATGATGATTCTCGTGTGCCCAATTTAGATGTTTTTGCCTTTGATCCTATTGCTTCAGAGGGTCCAACCATCAGTCTCTGCAACGACCGTACCATTCCAAGGAGAACATCATACTTGGGCGATGAGGAAGATATGGATCATCACCCACCCCTTTTCAAGGTTTTTGATCCCCTTCACCAAATTTGGAAAGAGCTCCCCCGTCCTCCCCACTGTGATGATAAATCATTAAAAAAATGGGAACAATGGCCAGAGAAAAAGGAGGAAAAGGAGGACGAAAGGAAGAACCAGTTTGTGTCTAAGGCTGTTGTAGAATTTGAGGGCTTTTTAATTGGTGTAAAATACCATAAGCTCACTGCTTATCAGTTGGATCCGAATGGTATCCCCAAGCTGTTTCGAGACCTACATGAACTTCAGGGGATATTCTGTCCGTTTTTACTCGTTGCTAACTGTGTTATGGGTAAGTGTGATGGTGGCCGAATTTGGCTGGTGTACACCGGCAAGGATCTTATGGATTTTTATCATACACGTGTAGCTGTGTTTCAAGTTTCCATCTCCGACGATCTTGATGGCAATCCGGTCCTCTCCACTGAACTCGAGGCTGCGGAGTTTTATTGCTTCCGAAATAGTTATGCTACATTGTCCTCAGCTTTTTCCATGTGCCTTCATTCAAACAATCGTGATATTGAGGACAAAAACTTATGTGGGACAATTCTAGCATATGATCATCCTCAAGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006479 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016278 GO:0016279 GO:0016740 GO:0016741 GO:0018022 GO:0018023 GO:0018026 GO:0018193 GO:0018205 GO:0019538 GO:0032259 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rubis-subs-bind SET

Protein Analysis

362

Amino Acids

41.69

Weight (kDa)

5.22

Isoelectric Point (pI)

44.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000563)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g40701 FvH4_3g40701 FvH4_3g42210 FvH4_4g30821 FvH4_4g30830 FvH4_4g30861 FvH4_4g30870 FvH4_4g30880 FvH4_4g30890 FvH4_6g30071 FvH4_6g44331 FvH4_6g44332 FvH4_6g44333
malus_domestica	MD15G1041200.v1.1 MD15G1041700.v1.1 MD15G1401000.v1.1
prunus_persica	Prupe.5G008800_v2.0.a1 Prupe.5G157900_v2.0.a1
pyrus_communis	pycom05g01010 pycom15g03820 pycom15g03830 pycom15g03850 pycom15g04240
rosa_chinensis	RchiOBHm_Chr5g0075231
rosa_laevigata	RLG00000008231 RLG00000008232 RLG00000008235 RLG00000008239 RLG00000008240 RLG00000008241 RLG00000021260 RLG00000021269 RLG00000036539 RLG00000036540 RLG00000037046
rosa_multiflora	Rmu_sc0000955.1_g000047 Rmu_sc0006420.1_g000034
rosa_roxburghii	Rroxscaffold_1G00000870 Rroxscaffold_1G00000880 Rroxscaffold_1G00006320 Rroxscaffold_2G00088990 Rroxscaffold_2G00089000 Rroxscaffold_2G00089010 Rroxscaffold_2G00089100 Rroxscaffold_5G00357190 Rroxscaffold_5G00357200
rosa_rugosa	Rorug04G0118300 Rorug04G0118400 Rorug05G0437400 Rorug05G0439900
rosa_samantha	Rh2AG552900 Rh2AG553000 Rh2BG566800 Rh2CG536900 Rh2DG575800 Rh2DG575900 Rh4AG177300 Rh4AG177400 Rh4AG178100 Rh4AG178300 Rh4AG178400 Rh4AG178500 Rh4BG177100 Rh4BG177200 Rh4BG177700 Rh4CG188300 Rh4CG188700 Rh4CG188800 Rh4CG189000 Rh4CG189100 Rh5AG494400 Rh5AG497000 Rh5AG537400 Rh5BG515800 Rh5BG515900 Rh5BG516000 Rh5CG539600 Rh5CG539700 Rh5CG539800 Rh5DG528600 Rh5DG528700
rosa_wichuraiana	Rw2G045740 Rw4G014830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	20, 176, 950
AclWI	GGATC	6 cut(s)	386, 492, 509, 710, 723, 858
AcoI	YGGCCR	2 cut(s)	593, 820
AcsI	RAATTY	5 cut(s)	86, 100, 528, 659, 825
AcuI	CTGAAG	2 cut(s)	387, 743
AcvI	CACGTG	1 cut(s)	875
AfaI	GTAC	4 cut(s)	44, 342, 439, 839
AfiI	CCNNNNNNNGG	3 cut(s)	337, 447, 505
AflIII	ACRYGT	3 cut(s)	242, 872, 874
AgsI	TTSAA	4 cut(s)	122, 505, 890, 1017
AluBI	AGCT	5 cut(s)	541, 697, 736, 881, 995
AluI	AGCT	5 cut(s)	541, 697, 736, 881, 995
Alw21I	GWGCWC	1 cut(s)	543
Alw26I	GTCTC	2 cut(s)	428, 738
AlwI	GGATC	6 cut(s)	386, 492, 509, 710, 723, 858
AlwNI	CAGNNNCTG	1 cut(s)	426
Ama87I	CYCGRG	1 cut(s)	941
AoxI	GGCC	2 cut(s)	593, 820
ApeKI	GCWGC	1 cut(s)	947
ApoI	RAATTY	5 cut(s)	86, 100, 528, 659, 825
ArsI	GACNNNNNNTTYG	2 cut(s)	55, 87
AspS9I	GGNCC	2 cut(s)	410, 925
AsuHPI	GGTGA	4 cut(s)	161, 239, 482, 515
AvaI	CYCGRG	1 cut(s)	941
AvaII	GGWCC	2 cut(s)	410, 925
BaeGI	GKGCMC	1 cut(s)	369
BaeI	ACNNNNGTAYC	2 cut(s)	421, 454
BalI	TGGCCA	1 cut(s)	595
BamHI	GGATCC	1 cut(s)	715
BanII	GRGCYC	1 cut(s)	543
BauI	CACGAG	1 cut(s)	360
BbrPI	CACGTG	1 cut(s)	875
Bbv12I	GWGCWC	1 cut(s)	543
BbvCI	CCTCAGC	1 cut(s)	991
BbvI	GCAGC	1 cut(s)	934
BccI	CCATC	5 cut(s)	140, 425, 809, 905, 908
BceAI	ACGGC	1 cut(s)	54
BciVI	GTATCC	1 cut(s)	737
BclI	TGATCA	1 cut(s)	1069
BcoDI	GTCTC	2 cut(s)	428, 738
BfaI	CTAG	1 cut(s)	1061
BfmI	CTRYAG	1 cut(s)	192
BfuI	GTATCC	1 cut(s)	737
BisI	GCNGC	1 cut(s)	948
BlsI	GCNGC	1 cut(s)	949
Bme18I	GGWCC	2 cut(s)	410, 925
BmeT110I	CYCGRG	1 cut(s)	941
BmgT120I	GGNCC	2 cut(s)	410, 925
BmiI	GGNNCC	3 cut(s)	205, 411, 717
BoxI	GACNNNNGTC	1 cut(s)	156
Bpu10I	CCTNAGC	1 cut(s)	991
BpuEI	CTTGAG	1 cut(s)	1062
BsaAI	YACGTR	1 cut(s)	875
BsaBI	GATNNNNATC	4 cut(s)	138, 483, 864, 918
BsaI	GGTCTC	1 cut(s)	738
BsaJI	CCNNGG	1 cut(s)	446
BsaWI	WCCGGW	2 cut(s)	284, 922
Bsc4I	CCNNNNNNNGG	3 cut(s)	337, 447, 505
Bse118I	RCCGGY	1 cut(s)	842
Bse1I	ACTGG	1 cut(s)	634
Bse8I	GATNNNNATC	4 cut(s)	138, 483, 864, 918
BseDI	CCNNGG	1 cut(s)	446
BseGI	GGATG	2 cut(s)	280, 1072
BseJI	GATNNNNATC	4 cut(s)	138, 483, 864, 918
BseLI	CCNNNNNNNGG	3 cut(s)	337, 447, 505
BseMII	CTCAG	2 cut(s)	128, 1005
BseNI	ACTGG	1 cut(s)	634
BseSI	GKGCMC	1 cut(s)	369
BseXI	GCAGC	1 cut(s)	934
Bsh1285I	CGRYCG	2 cut(s)	61, 436
BshFI	GGCC	2 cut(s)	595, 822
BsiEI	CGRYCG	2 cut(s)	61, 436
BsiHKAI	GWGCWC	1 cut(s)	543
BsiHKCI	CYCGRG	1 cut(s)	941
BsiSI	CCGG	3 cut(s)	285, 843, 923
BslFI	GGGAC	1 cut(s)	1066
BslI	CCNNNNNNNGG	3 cut(s)	337, 447, 505
BsmAI	GTCTC	2 cut(s)	428, 738
BsmFI	GGGAC	1 cut(s)	1066
BsmI	GAATGC	1 cut(s)	189
BsnI	GGCC	2 cut(s)	595, 822
Bso31I	GGTCTC	1 cut(s)	738
BsoBI	CYCGRG	1 cut(s)	941
Bsp1286I	GDGCHC	2 cut(s)	369, 543
Bsp1407I	TGTACA	1 cut(s)	837
Bsp143I	GATC	8 cut(s)	58, 391, 484, 514, 715, 850, 907, 1069
BspACI	CCGC	3 cut(s)	20, 176, 950
BspANI	GGCC	2 cut(s)	595, 822
BspCNI	CTCAG	2 cut(s)	127, 1004
BspLI	GGNNCC	3 cut(s)	205, 411, 717
BspPI	GGATC	6 cut(s)	386, 492, 509, 710, 723, 858
BspTNI	GGTCTC	1 cut(s)	738
BsrFI	RCCGGY	1 cut(s)	842
BsrGI	TGTACA	1 cut(s)	837
BsrI	ACTGG	1 cut(s)	634
BssAI	RCCGGY	1 cut(s)	842
BssECI	CCNNGG	1 cut(s)	446
BssMI	GATC	8 cut(s)	58, 391, 484, 514, 715, 850, 907, 1069
BssSI	CACGAG	1 cut(s)	360
BssT1I	CCWWGG	1 cut(s)	446
Bst2BI	CACGAG	1 cut(s)	360
Bst4CI	ACNGT	4 cut(s)	323, 437, 560, 797
BstAPI	GCANNNNNTGC	1 cut(s)	184
BstAUI	TGTACA	1 cut(s)	837
BstBAI	YACGTR	1 cut(s)	875
BstC8I	GCNNGC	1 cut(s)	12
BstDEI	CTNAG	3 cut(s)	114, 645, 991
BstENI	CCTNNNNNAGG	1 cut(s)	503
BstF5I	GGATG	2 cut(s)	280, 1072
BstKTI	GATC	8 cut(s)	61, 394, 487, 517, 718, 853, 910, 1072
BstMAI	GTCTC	2 cut(s)	428, 738
BstMBI	GATC	8 cut(s)	58, 391, 484, 514, 715, 850, 907, 1069
BstMCI	CGRYCG	2 cut(s)	61, 436
BstMWI	GCNNNNNNNGC	1 cut(s)	184
BstPAI	GACNNNNGTC	1 cut(s)	156
BstSFI	CTRYAG	1 cut(s)	192
BstSLI	GKGCMC	1 cut(s)	369
BstV1I	GCAGC	1 cut(s)	934
BstX2I	RGATCY	2 cut(s)	715, 850
BstYI	RGATCY	2 cut(s)	715, 850
BsuI	GTATCC	1 cut(s)	737
BsuRI	GGCC	2 cut(s)	595, 822
BtgZI	GCGATG	1 cut(s)	483
BtsCI	GGATG	2 cut(s)	280, 1072
BtsI	GCAGTG	1 cut(s)	699
BtsIMutI	CAGTG	3 cut(s)	556, 699, 933
Cac8I	GCNNGC	1 cut(s)	12
CaiI	CAGNNNCTG	1 cut(s)	426
Cfr10I	RCCGGY	1 cut(s)	842
Cfr13I	GGNCC	2 cut(s)	410, 925
Csp6I	GTAC	4 cut(s)	43, 341, 438, 838
CviAII	CATG	4 cut(s)	131, 350, 752, 1003
CviQI	GTAC	4 cut(s)	43, 341, 438, 838
DdeI	CTNAG	3 cut(s)	114, 645, 991
DpnI	GATC	8 cut(s)	60, 393, 486, 516, 717, 852, 909, 1071
DpnII	GATC	8 cut(s)	58, 391, 484, 514, 715, 850, 907, 1069
EaeI	YGGCCR	2 cut(s)	593, 820
Ecl136II	GAGCTC	1 cut(s)	541
Eco130I	CCWWGG	1 cut(s)	446
Eco24I	GRGCYC	1 cut(s)	543
Eco31I	GGTCTC	1 cut(s)	738
Eco47I	GGWCC	2 cut(s)	410, 925
Eco53kI	GAGCTC	1 cut(s)	541
Eco57I	CTGAAG	2 cut(s)	387, 743
Eco72I	CACGTG	1 cut(s)	875
Eco88I	CYCGRG	1 cut(s)	941
EcoICRI	GAGCTC	1 cut(s)	541
EcoNI	CCTNNNNNAGG	1 cut(s)	503
EcoRI	GAATTC	2 cut(s)	86, 100
EcoT14I	CCWWGG	1 cut(s)	446
EcoT38I	GRGCYC	1 cut(s)	543
ErhI	CCWWGG	1 cut(s)	446
FaeI	CATG	4 cut(s)	134, 353, 755, 1006
FaqI	GGGAC	1 cut(s)	1066
FatI	CATG	4 cut(s)	130, 349, 751, 1002
FauNDI	CATATG	1 cut(s)	1066
FbaI	TGATCA	1 cut(s)	1069
Fnu4HI	GCNGC	1 cut(s)	948
FokI	GGATG	2 cut(s)	287, 1059
FriOI	GRGCYC	1 cut(s)	543
Fsp4HI	GCNGC	1 cut(s)	948
FspBI	CTAG	1 cut(s)	1061
GluI	GCNGC	1 cut(s)	948
HaeIII	GGCC	2 cut(s)	595, 822
HapII	CCGG	3 cut(s)	285, 843, 923
Hin1II	CATG	4 cut(s)	134, 353, 755, 1006
HinfI	GANTC	5 cut(s)	230, 263, 269, 281, 356
HpaII	CCGG	3 cut(s)	285, 843, 923
HphI	GGTGA	4 cut(s)	161, 239, 482, 515
Hpy166II	GTNNAC	2 cut(s)	838, 840
Hpy188I	TCNGA	7 cut(s)	268, 274, 310, 406, 720, 904, 968
Hpy188III	TCNNGA	4 cut(s)	143, 743, 911, 1025
Hpy8I	GTNNAC	2 cut(s)	838, 840
Hpy99I	CGWCG	2 cut(s)	348, 908
HpyAV	CCTTC	3 cut(s)	22, 530, 1019
HpyCH4III	ACNGT	4 cut(s)	323, 437, 560, 797
HpyCH4IV	ACGT	3 cut(s)	242, 343, 874
HpyCH4V	TGCA	4 cut(s)	93, 130, 187, 429
HpyF10VI	GCNNNNNNNGC	1 cut(s)	184
HpyF3I	CTNAG	3 cut(s)	114, 645, 991
HpySE526I	ACGT	3 cut(s)	242, 343, 874
Hsp92II	CATG	4 cut(s)	134, 353, 755, 1006
Ksp22I	TGATCA	1 cut(s)	1069
Kzo9I	GATC	8 cut(s)	58, 391, 484, 514, 715, 850, 907, 1069
LmnI	GCTCC	1 cut(s)	546
Lsp1109I	GCAGC	1 cut(s)	934
MaeI	CTAG	1 cut(s)	1061
MaeII	ACGT	3 cut(s)	242, 343, 874
MaeIII	GTNAC	2 cut(s)	149, 245
MalI	GATC	8 cut(s)	60, 393, 486, 516, 717, 852, 909, 1071
MboI	GATC	8 cut(s)	58, 391, 484, 514, 715, 850, 907, 1069
MboII	GAAGA	2 cut(s)	488, 640
MflI	RGATCY	2 cut(s)	715, 850
MhlI	GDGCHC	2 cut(s)	369, 543
MlsI	TGGCCA	1 cut(s)	595
MluCI	AATT	9 cut(s)	86, 100, 304, 370, 528, 659, 675, 825, 1056
MluNI	TGGCCA	1 cut(s)	595
MmeI	TCCRAC	3 cut(s)	437, 693, 927
Mox20I	TGGCCA	1 cut(s)	595
MscI	TGGCCA	1 cut(s)	595
MseI	TTAA	2 cut(s)	575, 674
MslI	CAYNNNNRTG	2 cut(s)	561, 873
Msp20I	TGGCCA	1 cut(s)	595
MspI	CCGG	3 cut(s)	285, 843, 923
Mva1269I	GAATGC	1 cut(s)	189
MwoI	GCNNNNNNNGC	1 cut(s)	184
NdeI	CATATG	1 cut(s)	1066
NdeII	GATC	8 cut(s)	58, 391, 484, 514, 715, 850, 907, 1069
NlaIII	CATG	4 cut(s)	134, 353, 755, 1006
NlaIV	GGNNCC	3 cut(s)	205, 411, 717
NmuCI	GTSAC	1 cut(s)	149
PaeR7I	CTCGAG	1 cut(s)	941
PcsI	WCGNNNNNNNCGW	1 cut(s)	67
PctI	GAATGC	1 cut(s)	189
PfeI	GAWTC	5 cut(s)	230, 263, 269, 281, 356
PkrI	GCNGC	1 cut(s)	949
Ple19I	CGATCG	1 cut(s)	61
PmaCI	CACGTG	1 cut(s)	875
PmlI	CACGTG	1 cut(s)	875
Ppu21I	YACGTR	1 cut(s)	875
PshAI	GACNNNNGTC	1 cut(s)	156
Psp124BI	GAGCTC	1 cut(s)	543
PspCI	CACGTG	1 cut(s)	875
PspN4I	GGNNCC	3 cut(s)	205, 411, 717
PspPI	GGNCC	2 cut(s)	410, 925
PspXI	VCTCGAGB	1 cut(s)	941
PstNI	CAGNNNCTG	1 cut(s)	426
PsuI	RGATCY	2 cut(s)	715, 850
PvuI	CGATCG	1 cut(s)	61
RsaI	GTAC	4 cut(s)	44, 342, 439, 839
RsaNI	GTAC	4 cut(s)	43, 341, 438, 838
RseI	CAYNNNNRTG	2 cut(s)	561, 873
SacI	GAGCTC	1 cut(s)	543
SaqAI	TTAA	2 cut(s)	575, 674
SatI	GCNGC	1 cut(s)	948
Sau3AI	GATC	8 cut(s)	58, 391, 484, 514, 715, 850, 907, 1069
Sau96I	GGNCC	2 cut(s)	410, 925
SduI	GDGCHC	2 cut(s)	369, 543
SfcI	CTRYAG	1 cut(s)	192
Sfr274I	CTCGAG	1 cut(s)	941
SinI	GGWCC	2 cut(s)	410, 925
SlaI	CTCGAG	1 cut(s)	941
SmiMI	CAYNNNNRTG	2 cut(s)	561, 873
SmlI	CTYRAG	2 cut(s)	941, 1077
SmoI	CTYRAG	2 cut(s)	941, 1077
Sse9I	AATT	9 cut(s)	86, 100, 304, 370, 528, 659, 675, 825, 1056
SsiI	CCGC	3 cut(s)	20, 176, 950
SspI	AATATT	1 cut(s)	79
SspMI	CTAG	1 cut(s)	1061
SstI	GAGCTC	1 cut(s)	543
StyI	CCWWGG	1 cut(s)	446
TaaI	ACNGT	4 cut(s)	323, 437, 560, 797
TaiI	ACGT	3 cut(s)	245, 346, 877
TaqI	TCGA	3 cut(s)	61, 742, 942
TasI	AATT	9 cut(s)	86, 100, 304, 370, 528, 659, 675, 825, 1056
TatI	WGTACW	2 cut(s)	42, 837
TfiI	GAWTC	5 cut(s)	230, 263, 269, 281, 356
Tru1I	TTAA	2 cut(s)	575, 674
Tru9I	TTAA	2 cut(s)	575, 674
TscAI	CASTG	3 cut(s)	563, 706, 940
TseFI	GTSAC	1 cut(s)	149
TseI	GCWGC	1 cut(s)	947
Tsp45I	GTSAC	1 cut(s)	149
TspDTI	ATGAA	3 cut(s)	99, 768, 1001
TspGWI	ACGGA	2 cut(s)	68, 765
TspRI	CASTG	3 cut(s)	563, 706, 940
VpaK11BI	GGWCC	2 cut(s)	410, 925
XagI	CCTNNNNNAGG	1 cut(s)	503
XapI	RAATTY	5 cut(s)	86, 100, 528, 659, 825
XcmI	CCANNNNNNNNNTGG	1 cut(s)	30
XhoI	CTCGAG	1 cut(s)	941
XspI	CTAG	1 cut(s)	1061

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.