RLG00000008235

Ribulose-1,5 bisphosphate carboxylase oxygenase large subunit N-methyltransferase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Reverse (-)
27532140 .. 27533706
1567 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008235

Sequence Viewer

Length: 1248 bp
ATGCCGATGCAAGCACTACCGCCAAAGAAGGATTGGTTTTTGTACTTGATGATGGACGATCGAATATGCCGTCTAAATATTGATGAATTCTGCAAAAGGAACTCTCCAAAGCCTCAGTTTGAAGTTGTGCATGATTATTATCCTAATGGCGACTATCTTCTTGATACAAATATTCCGCAGGGAATGGAACCTATAGTTCTGGGTTCCAAAGTGTATATGTTGGGGGGTGAATCCACAAGAACGTGTAACCCTGAAATGAAGGATTCTGATTCTGATGATGATTCCGGTGGCAGTGGAAGATATAATTCTGAAAATGATTACCGTAATGACCGTGAAAGGGTACGTCGGCATGATGATTCTCGTGTGCCCAATTTGGATGTTTTTGCCTTTGATCCGAATGCTTCTGAGGGTCCAATCATCAGTCTCTGCATCGACCGTACCATTCCAAGGAAGCTAATTGATCCGAGGTTGATTGATCCAAAGACCTTGTCTGGTCCTGAAGTTTTCACCCTGGAGGGCAAAATCTATGTTATGGCCAGAACATCATACTTGGGCGATGAGGAAGATATGGATCATCACCCACCCCTTTTCAAGGTTTTTGATCCCCTTCGCCAAATTTGGAAAGAGCTTCCCCGTCCTCCCCACTGTGACGATAAATCATCAAGTTTATATCGTTACTCTGCTTGGGGTCACAAGATTGTAACTTGCAATTCTTGGTCGGGTTTATACCTTTTTGACGTTCACCAAGAGAAGTGGGAAAAATGGCCAGAGCAAAAGGAGGACGAAGGGAACAACCACCTTGAGTTTAAGGCTGTTGTAGAATTTGAGGGCTTTTTAATTGGTGTAAAATACCATGAGCTCACTGCTTATCAGTTGGATCCGAATGGTATCCCCAAGCTGTTTCGAGACCTAGATGAGCTCCAGGGGATATTCTGTCCTTTTTTACTCGTCGGTAACTGTGTTATGGGTAAGTGTGATGGTGGCCGAATTTGGTTGGTGTATACCGGCAAGGATCTTATGGAATATTGGCATACACGTGTAGCTGTGTTTCAAGTTTCCATCTCCGACGATCGTGATGGCAATCCGGTCCTCTCCACTGAACTCGAGGCTGCGGAGTTTTATTTATTCCAAAACAGTTATGCTAGATTGTCCTCAGCTTTTTCCATGTGCCATCATTCAAACAACCGTGATATTGAGGAGAAAAACTTATGTGGGACAATTCTAGCACATGATCATCCTCGAGGGTGA

Protein Analysis

416

Amino Acids

47.98

Weight (kDa)

5.09

Isoelectric Point (pI)

32.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Kelch_FKB95 PF25210 165 - 337 5.1e-08 FKB95, Kelch-repeats domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 1239
AccI GTMKAC 1 cut(s) 1001
AciI CCGC 3 cut(s) 20, 176, 1112
AclWI GGATC 8 cut(s) 386, 455, 470, 579, 596, 872, 885, 1020
AcoI YGGCCR 3 cut(s) 534, 764, 982
AcsI RAATTY 4 cut(s) 86, 615, 821, 987
AcuI CTGAAG 1 cut(s) 519
AcvI CACGTG 1 cut(s) 1037
AfaI GTAC 3 cut(s) 44, 342, 439
AfiI CCNNNNNNNGG 3 cut(s) 337, 447, 592
AflIII ACRYGT 3 cut(s) 242, 1034, 1036
AgsI TTSAA 4 cut(s) 122, 592, 1052, 1179
AjnI CCWGG 2 cut(s) 510, 921
AluBI AGCT 7 cut(s) 454, 628, 859, 898, 919, 1043, 1157
AluI AGCT 7 cut(s) 454, 628, 859, 898, 919, 1043, 1157
Alw21I GWGCWC 2 cut(s) 861, 921
Alw26I GTCTC 2 cut(s) 428, 900
AlwI GGATC 8 cut(s) 386, 455, 470, 579, 596, 872, 885, 1020
AlwNI CAGNNNCTG 1 cut(s) 426
Ama87I CYCGRG 2 cut(s) 1103, 1239
AoxI GGCC 3 cut(s) 534, 764, 982
ApeKI GCWGC 1 cut(s) 1109
ApoI RAATTY 4 cut(s) 86, 615, 821, 987
ArsI GACNNNNNNTTYG 4 cut(s) 55, 87, 473, 505
AspS9I GGNCC 3 cut(s) 410, 494, 1087
AsuHPI GGTGA 4 cut(s) 239, 499, 569, 734
AvaI CYCGRG 2 cut(s) 1103, 1239
AvaII GGWCC 3 cut(s) 410, 494, 1087
BaeGI GKGCMC 1 cut(s) 369
BalI TGGCCA 2 cut(s) 536, 766
BamHI GGATCC 1 cut(s) 877
BanII GRGCYC 2 cut(s) 861, 921
BauI CACGAG 1 cut(s) 360
BbrPI CACGTG 1 cut(s) 1037
Bbv12I GWGCWC 2 cut(s) 861, 921
BbvCI CCTCAGC 1 cut(s) 1153
BbvI GCAGC 1 cut(s) 1096
BccI CCATC 5 cut(s) 46, 971, 1067, 1070, 1179
BceAI ACGGC 1 cut(s) 54
BciT130I CCWGG 2 cut(s) 512, 923
BciVI GTATCC 1 cut(s) 899
BclI TGATCA 1 cut(s) 1231
BcoDI GTCTC 2 cut(s) 428, 900
BfaI CTAG 3 cut(s) 911, 1143, 1223
BfmI CTRYAG 1 cut(s) 192
BfuI GTATCC 1 cut(s) 899
BisI GCNGC 1 cut(s) 1110
BlsI GCNGC 1 cut(s) 1111
Bme1390I CCNGG 2 cut(s) 512, 923
Bme18I GGWCC 3 cut(s) 410, 494, 1087
BmeT110I CYCGRG 2 cut(s) 1103, 1239
BmgT120I GGNCC 3 cut(s) 410, 494, 1087
BmiI GGNNCC 4 cut(s) 189, 205, 411, 879
BmrFI CCNGG 2 cut(s) 512, 923
BmsI GCATC 1 cut(s) 438
BpmI CTGGAG 2 cut(s) 533, 905
Bpu10I CCTNAGC 1 cut(s) 1153
BpuEI CTTGAG 1 cut(s) 821
BsaAI YACGTR 1 cut(s) 1037
BsaBI GATNNNNATC 3 cut(s) 138, 570, 1080
BsaI GGTCTC 1 cut(s) 900
BsaJI CCNNGG 4 cut(s) 446, 464, 510, 922
BsaWI WCCGGW 2 cut(s) 284, 1084
Bsc4I CCNNNNNNNGG 3 cut(s) 337, 447, 592
Bse118I RCCGGY 1 cut(s) 1004
Bse8I GATNNNNATC 3 cut(s) 138, 570, 1080
BseBI CCWGG 2 cut(s) 512, 923
BseDI CCNNGG 4 cut(s) 446, 464, 510, 922
BseGI GGATG 2 cut(s) 382, 1234
BseJI GATNNNNATC 3 cut(s) 138, 570, 1080
BseLI CCNNNNNNNGG 3 cut(s) 337, 447, 592
BseMII CTCAG 3 cut(s) 128, 396, 1167
BseRI GAGGAG 1 cut(s) 1211
BseSI GKGCMC 1 cut(s) 369
BseXI GCAGC 1 cut(s) 1096
Bsh1285I CGRYCG 3 cut(s) 61, 436, 1072
BshFI GGCC 3 cut(s) 536, 766, 984
BsiEI CGRYCG 3 cut(s) 61, 436, 1072
BsiHKAI GWGCWC 2 cut(s) 861, 921
BsiHKCI CYCGRG 2 cut(s) 1103, 1239
BsiSI CCGG 3 cut(s) 285, 1005, 1085
BslFI GGGAC 1 cut(s) 1228
BslI CCNNNNNNNGG 3 cut(s) 337, 447, 592
BsmAI GTCTC 2 cut(s) 428, 900
BsmFI GGGAC 1 cut(s) 1228
BsmI GAATGC 1 cut(s) 403
BsnI GGCC 3 cut(s) 536, 766, 984
Bso31I GGTCTC 1 cut(s) 900
BsoBI CYCGRG 2 cut(s) 1103, 1239
Bsp1286I GDGCHC 3 cut(s) 369, 861, 921
BspACI CCGC 3 cut(s) 20, 176, 1112
BspANI GGCC 3 cut(s) 536, 766, 984
BspCNI CTCAG 3 cut(s) 127, 397, 1166
BspLI GGNNCC 4 cut(s) 189, 205, 411, 879
BspPI GGATC 8 cut(s) 386, 455, 470, 579, 596, 872, 885, 1020
BspTNI GGTCTC 1 cut(s) 900
BsrFI RCCGGY 1 cut(s) 1004
BssAI RCCGGY 1 cut(s) 1004
BssECI CCNNGG 4 cut(s) 446, 464, 510, 922
BssNAI GTATAC 1 cut(s) 1002
BssSI CACGAG 1 cut(s) 360
BssT1I CCWWGG 1 cut(s) 446
Bst1107I GTATAC 1 cut(s) 1002
Bst2BI CACGAG 1 cut(s) 360
Bst2UI CCWGG 2 cut(s) 512, 923
Bst4CI ACNGT 7 cut(s) 323, 332, 437, 647, 959, 1136, 1187
BstBAI YACGTR 1 cut(s) 1037
BstC8I GCNNGC 1 cut(s) 12
BstDEI CTNAG 3 cut(s) 114, 405, 1153
BstENI CCTNNNNNAGG 1 cut(s) 590
BstF5I GGATG 2 cut(s) 382, 1234
BstMAI GTCTC 2 cut(s) 428, 900
BstMCI CGRYCG 3 cut(s) 61, 436, 1072
BstNI CCWGG 2 cut(s) 512, 923
BstSCI CCNGG 2 cut(s) 510, 921
BstSFI CTRYAG 1 cut(s) 192
BstSLI GKGCMC 1 cut(s) 369
BstV1I GCAGC 1 cut(s) 1096
BstX2I RGATCY 2 cut(s) 877, 1012
BstYI RGATCY 2 cut(s) 877, 1012
BstZ17I GTATAC 1 cut(s) 1002
BsuI GTATCC 1 cut(s) 899
BsuRI GGCC 3 cut(s) 536, 766, 984
BtgZI GCGATG 1 cut(s) 570
BtsCI GGATG 2 cut(s) 382, 1234
BtsI GCAGTG 2 cut(s) 298, 861
BtsIMutI CAGTG 4 cut(s) 298, 643, 861, 1095
Cac8I GCNNGC 1 cut(s) 12
CaiI CAGNNNCTG 1 cut(s) 426
Cfr10I RCCGGY 1 cut(s) 1004
Cfr13I GGNCC 3 cut(s) 410, 494, 1087
Csp6I GTAC 3 cut(s) 43, 341, 438
CspCI CAANNNNNGTGG 2 cut(s) 734, 769
CviAII CATG 5 cut(s) 131, 350, 854, 1165, 1229
CviQI GTAC 3 cut(s) 43, 341, 438
DdeI CTNAG 3 cut(s) 114, 405, 1153
EaeI YGGCCR 3 cut(s) 534, 764, 982
Ecl136II GAGCTC 2 cut(s) 859, 919
Eco130I CCWWGG 1 cut(s) 446
Eco24I GRGCYC 2 cut(s) 861, 921
Eco31I GGTCTC 1 cut(s) 900
Eco47I GGWCC 3 cut(s) 410, 494, 1087
Eco53kI GAGCTC 2 cut(s) 859, 919
Eco57I CTGAAG 1 cut(s) 519
Eco72I CACGTG 1 cut(s) 1037
Eco88I CYCGRG 2 cut(s) 1103, 1239
EcoICRI GAGCTC 2 cut(s) 859, 919
EcoNI CCTNNNNNAGG 1 cut(s) 590
EcoRI GAATTC 1 cut(s) 86
EcoRII CCWGG 2 cut(s) 510, 921
EcoT14I CCWWGG 1 cut(s) 446
EcoT38I GRGCYC 2 cut(s) 861, 921
ErhI CCWWGG 1 cut(s) 446
FaeI CATG 5 cut(s) 134, 353, 857, 1168, 1232
FaqI GGGAC 1 cut(s) 1228
FatI CATG 5 cut(s) 130, 349, 853, 1164, 1228
FbaI TGATCA 1 cut(s) 1231
FblI GTMKAC 1 cut(s) 1001
Fnu4HI GCNGC 1 cut(s) 1110
FokI GGATG 2 cut(s) 389, 1221
FriOI GRGCYC 2 cut(s) 861, 921
Fsp4HI GCNGC 1 cut(s) 1110
FspBI CTAG 3 cut(s) 911, 1143, 1223
GluI GCNGC 1 cut(s) 1110
GsuI CTGGAG 2 cut(s) 533, 905
HaeIII GGCC 3 cut(s) 536, 766, 984
HapII CCGG 3 cut(s) 285, 1005, 1085
Hin1II CATG 5 cut(s) 134, 353, 857, 1168, 1232
HinfI GANTC 5 cut(s) 230, 263, 269, 281, 356
HpaII CCGG 3 cut(s) 285, 1005, 1085
HphI GGTGA 4 cut(s) 239, 499, 569, 734
Hpy166II GTNNAC 2 cut(s) 742, 1002
Hpy188I TCNGA 8 cut(s) 268, 274, 310, 396, 406, 465, 882, 1066
Hpy188III TCNNGA 4 cut(s) 161, 497, 905, 1073
Hpy8I GTNNAC 2 cut(s) 742, 1002
Hpy99I CGWCG 3 cut(s) 348, 953, 1070
HpyAV CCTTC 4 cut(s) 22, 253, 617, 779
HpyCH4III ACNGT 7 cut(s) 323, 332, 437, 647, 959, 1136, 1187
HpyCH4IV ACGT 4 cut(s) 242, 343, 738, 1036
HpyCH4V TGCA 5 cut(s) 10, 93, 130, 429, 708
HpyF3I CTNAG 3 cut(s) 114, 405, 1153
HpySE526I ACGT 4 cut(s) 242, 343, 738, 1036
Hsp92II CATG 5 cut(s) 134, 353, 857, 1168, 1232
Ksp22I TGATCA 1 cut(s) 1231
LmnI GCTCC 1 cut(s) 924
Lsp1109I GCAGC 1 cut(s) 1096
LweI GCATC 1 cut(s) 438
MaeI CTAG 3 cut(s) 911, 1143, 1223
MaeII ACGT 4 cut(s) 242, 343, 738, 1036
MaeIII GTNAC 6 cut(s) 245, 647, 674, 689, 700, 953
MboII GAAGA 3 cut(s) 149, 309, 575
MflI RGATCY 2 cut(s) 877, 1012
MhlI GDGCHC 3 cut(s) 369, 861, 921
MlsI TGGCCA 2 cut(s) 536, 766
MluNI TGGCCA 2 cut(s) 536, 766
MmeI TCCRAC 2 cut(s) 855, 1089
Mox20I TGGCCA 2 cut(s) 536, 766
MscI TGGCCA 2 cut(s) 536, 766
MseI TTAA 2 cut(s) 807, 836
MslI CAYNNNNRTG 1 cut(s) 1035
Msp20I TGGCCA 2 cut(s) 536, 766
MspI CCGG 3 cut(s) 285, 1005, 1085
MspR9I CCNGG 2 cut(s) 512, 923
Mva1269I GAATGC 1 cut(s) 403
MvaI CCWGG 2 cut(s) 512, 923
NlaIII CATG 5 cut(s) 134, 353, 857, 1168, 1232
NlaIV GGNNCC 4 cut(s) 189, 205, 411, 879
NmuCI GTSAC 2 cut(s) 647, 689
PaeR7I CTCGAG 2 cut(s) 1103, 1239
PcsI WCGNNNNNNNCGW 1 cut(s) 67
PctI GAATGC 1 cut(s) 403
PfeI GAWTC 5 cut(s) 230, 263, 269, 281, 356
PflFI GACNNNGTC 1 cut(s) 487
PkrI GCNGC 1 cut(s) 1111
Ple19I CGATCG 2 cut(s) 61, 1072
PmaCI CACGTG 1 cut(s) 1037
PmlI CACGTG 1 cut(s) 1037
Ppu21I YACGTR 1 cut(s) 1037
Psp124BI GAGCTC 2 cut(s) 861, 921
Psp6I CCWGG 2 cut(s) 510, 921
PspCI CACGTG 1 cut(s) 1037
PspGI CCWGG 2 cut(s) 510, 921
PspN4I GGNNCC 4 cut(s) 189, 205, 411, 879
PspPI GGNCC 3 cut(s) 410, 494, 1087
PspXI VCTCGAGB 2 cut(s) 1103, 1239
PstNI CAGNNNCTG 1 cut(s) 426
PsuI RGATCY 2 cut(s) 877, 1012
PsyI GACNNNGTC 1 cut(s) 487
PvuI CGATCG 2 cut(s) 61, 1072
RsaI GTAC 3 cut(s) 44, 342, 439
RsaNI GTAC 3 cut(s) 43, 341, 438
RseI CAYNNNNRTG 1 cut(s) 1035
SacI GAGCTC 2 cut(s) 861, 921
SaqAI TTAA 2 cut(s) 807, 836
SatI GCNGC 1 cut(s) 1110
Sau96I GGNCC 3 cut(s) 410, 494, 1087
ScrFI CCNGG 2 cut(s) 512, 923
SduI GDGCHC 3 cut(s) 369, 861, 921
SfaNI GCATC 1 cut(s) 438
SfcI CTRYAG 1 cut(s) 192
Sfr274I CTCGAG 2 cut(s) 1103, 1239
SinI GGWCC 3 cut(s) 410, 494, 1087
SlaI CTCGAG 2 cut(s) 1103, 1239
SmiMI CAYNNNNRTG 1 cut(s) 1035
SmlI CTYRAG 3 cut(s) 800, 1103, 1239
SmoI CTYRAG 3 cut(s) 800, 1103, 1239
SsiI CCGC 3 cut(s) 20, 176, 1112
SspI AATATT 3 cut(s) 79, 172, 1025
SspMI CTAG 3 cut(s) 911, 1143, 1223
SstI GAGCTC 2 cut(s) 861, 921
StyD4I CCNGG 2 cut(s) 510, 921
StyI CCWWGG 1 cut(s) 446
TaaI ACNGT 7 cut(s) 323, 332, 437, 647, 959, 1136, 1187
TaiI ACGT 4 cut(s) 245, 346, 741, 1039
TaqI TCGA 5 cut(s) 61, 432, 904, 1104, 1240
TatI WGTACW 1 cut(s) 42
TfiI GAWTC 5 cut(s) 230, 263, 269, 281, 356
Tru1I TTAA 2 cut(s) 807, 836
Tru9I TTAA 2 cut(s) 807, 836
TscAI CASTG 4 cut(s) 298, 650, 868, 1102
TseFI GTSAC 2 cut(s) 647, 689
TseI GCWGC 1 cut(s) 1109
Tsp45I GTSAC 2 cut(s) 647, 689
TspDTI ATGAA 2 cut(s) 99, 272
TspRI CASTG 4 cut(s) 298, 650, 868, 1102
Tth111I GACNNNGTC 1 cut(s) 487
VpaK11BI GGWCC 3 cut(s) 410, 494, 1087
XagI CCTNNNNNAGG 1 cut(s) 590
XapI RAATTY 4 cut(s) 86, 615, 821, 987
XcmI CCANNNNNNNNNTGG 1 cut(s) 30
XhoI CTCGAG 2 cut(s) 1103, 1239
XmiI GTMKAC 1 cut(s) 1001
XspI CTAG 3 cut(s) 911, 1143, 1223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.