Rroxscaffold_1G00006320

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000563
Physical Location & Seq
Forward (+)
8419404 .. 8422221
2818 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00006320.1

Sequence Viewer

Length: 999 bp
ATGTTGAAGACGATGCTGAAGACAAGTGTTTTTTCACATGCCAAGAAGATGAGGGATCGCAAGCTATGCCGTCCAAATATTGGTAAACATTTATGTTCTTTGAATCAGCCCAAGTTTGAAGAAAGAATAACTTTGAAGGTGCAGCCACCGCCGGAGAAGAAGAAGAAGAAGAAGAAGACGAAGAAGGATTTGTTTATGTACTTGGATATAGGCCAGCAACTATGGCGTTTGAACATGAGAGAACTCTGCGGAAGATGGAGACAGTCGAAGAAGCCTCATCTTGAAGTTGTGCATGTTTTCGATTCCAATGCAGTGAATATTTCTAGTCCTTTCCGGCTTAAAGATATTTATTCCTTCTATCCCGGTGTTAAATTGTTCACCCTTGGGAACAAACTCTGTGTTCTTGACAGTCACGCTCGCTCTTTTAAGGAATTTGATCCCCTTCACAAATCTTGGAGACTTCTCCCTTATCCTCCAAGTTACAAAGATGTTAATGACGAGAAAGAACACCTAAATGAGGGGTTTAGGTCATTCAAGGATGATATAAGGGTTTGGGAGAAAGCGAAGGTTGCAACAGCAATTGTCGACATATACTGTAGTAGAAGTCACCGTAGTGACGAGAAAATAGAGAACGAGGTGGACGAGAAGAACTTGATGATGATCAGCCCGCGCGCCCCCCCTCCCCCAAATTTAAGGCTTTTGATCCCCTACACCAATCTTGGAAACATTTTCCTGATCCCCCTTGTTATAACACATCCATTACATGACACACAACTTTTTGTGTATAACCACTTTGCTTGGGGGCACAAGCTTATTATTAGTACCAAGTTGGGTTCGTACATTTTTGATACACATCAAGAGAAATGGGAGGATACACCCCACGAATTCCCGAATGAGGGGTTTAAGGCTGTTGTAGTAGTTCGGGGATTTTTAATTGGAATGCCTCATAATGGCAAAGAGCTTGTTGCTTATCAGTTGGATTCAAATGATGTTACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

332

Amino Acids

38.89

Weight (kDa)

9.5

Isoelectric Point (pI)

38.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 749
AccB7I CCANNNNNTGG 1 cut(s) 80
AccI GTMKAC 1 cut(s) 585
AccII CGCG 2 cut(s) 670, 672
AciI CCGC 3 cut(s) 149, 249, 668
AclWI GGATC 4 cut(s) 63, 431, 697, 730
AcsI RAATTY 3 cut(s) 431, 688, 884
AcuI CTGAAG 1 cut(s) 38
AfaI GTAC 3 cut(s) 200, 823, 839
AfiI CCNNNNNNNGG 5 cut(s) 80, 517, 895, 896, 950
AgsI TTSAA 8 cut(s) 7, 103, 119, 136, 232, 284, 535, 984
AleI CACNNNNGTG 1 cut(s) 612
AluBI AGCT 3 cut(s) 64, 811, 961
AluI AGCT 3 cut(s) 64, 811, 961
Alw26I GTCTC 2 cut(s) 253, 451
AlwI GGATC 4 cut(s) 63, 431, 697, 730
AoxI GGCC 1 cut(s) 211
ApeKI GCWGC 1 cut(s) 142
ApoI RAATTY 3 cut(s) 431, 688, 884
AspLEI GCGC 2 cut(s) 672, 674
AsuC2I CCSGG 1 cut(s) 363
AsuHPI GGTGA 2 cut(s) 370, 599
BaeGI GKGCMC 1 cut(s) 807
BbsI GAAGAC 3 cut(s) 14, 26, 182
BbvI GCAGC 1 cut(s) 154
BccI CCATC 1 cut(s) 249
BceAI ACGGC 1 cut(s) 54
BcgI CGANNNNNNTGC 2 cut(s) 290, 324
BciVI GTATCC 1 cut(s) 865
BclI TGATCA 1 cut(s) 660
BcnI CCSGG 1 cut(s) 363
BcoDI GTCTC 2 cut(s) 253, 451
BfaI CTAG 1 cut(s) 324
BfmI CTRYAG 1 cut(s) 595
BfuI GTATCC 1 cut(s) 865
BisI GCNGC 1 cut(s) 143
BlsI GCNGC 1 cut(s) 144
Bme1390I CCNGG 1 cut(s) 363
BmrFI CCNGG 1 cut(s) 363
BmsI GCATC 1 cut(s) 3
BpiI GAAGAC 3 cut(s) 14, 26, 182
BpuMI CCSGG 1 cut(s) 363
BsaBI GATNNNNATC 2 cut(s) 659, 852
BsaJI CCNNGG 1 cut(s) 382
Bsc4I CCNNNNNNNGG 5 cut(s) 80, 517, 895, 896, 950
Bse8I GATNNNNATC 2 cut(s) 659, 852
BseDI CCNNGG 1 cut(s) 382
BseGI GGATG 2 cut(s) 544, 754
BseJI GATNNNNATC 2 cut(s) 659, 852
BseLI CCNNNNNNNGG 5 cut(s) 80, 517, 895, 896, 950
BsePI GCGCGC 1 cut(s) 670
BseSI GKGCMC 1 cut(s) 807
BseXI GCAGC 1 cut(s) 154
BsgI GTGCAG 1 cut(s) 161
Bsh1236I CGCG 2 cut(s) 670, 672
BshFI GGCC 1 cut(s) 213
BsiSI CCGG 3 cut(s) 152, 334, 363
BslI CCNNNNNNNGG 5 cut(s) 80, 517, 895, 896, 950
BsmAI GTCTC 2 cut(s) 253, 451
BsmI GAATGC 1 cut(s) 945
BsnI GGCC 1 cut(s) 213
Bsp1286I GDGCHC 1 cut(s) 807
Bsp143I GATC 5 cut(s) 55, 436, 660, 702, 735
BspACI CCGC 3 cut(s) 149, 249, 668
BspANI GGCC 1 cut(s) 213
BspFNI CGCG 2 cut(s) 670, 672
BspPI GGATC 4 cut(s) 63, 431, 697, 730
BssECI CCNNGG 1 cut(s) 382
BssHII GCGCGC 1 cut(s) 670
BssMI GATC 5 cut(s) 55, 436, 660, 702, 735
BssT1I CCWWGG 1 cut(s) 382
Bst4CI ACNGT 4 cut(s) 264, 410, 596, 611
BstAPI GCANNNNNTGC 1 cut(s) 66
BstC8I GCNNGC 5 cut(s) 62, 215, 418, 668, 672
BstENI CCTNNNNNAGG 1 cut(s) 515
BstF5I GGATG 2 cut(s) 544, 754
BstFNI CGCG 2 cut(s) 670, 672
BstHHI GCGC 2 cut(s) 672, 674
BstKTI GATC 5 cut(s) 58, 439, 663, 705, 738
BstMAI GTCTC 2 cut(s) 253, 451
BstMBI GATC 5 cut(s) 55, 436, 660, 702, 735
BstMWI GCNNNNNNNGC 4 cut(s) 66, 148, 223, 569
BstNSI RCATGY 2 cut(s) 41, 296
BstSCI CCNGG 1 cut(s) 361
BstSFI CTRYAG 1 cut(s) 595
BstSLI GKGCMC 1 cut(s) 807
BstUI CGCG 2 cut(s) 670, 672
BstV1I GCAGC 1 cut(s) 154
BstV2I GAAGAC 3 cut(s) 14, 26, 182
BsuI GTATCC 1 cut(s) 865
BsuRI GGCC 1 cut(s) 213
BtsCI GGATG 2 cut(s) 544, 754
BtsI GCAGTG 1 cut(s) 318
BtsIMutI CAGTG 1 cut(s) 318
Cac8I GCNNGC 5 cut(s) 62, 215, 418, 668, 672
CfoI GCGC 2 cut(s) 672, 674
Csp6I GTAC 3 cut(s) 199, 822, 838
CspCI CAANNNNNGTGG 2 cut(s) 779, 814
CviAII CATG 5 cut(s) 38, 235, 293, 764, 996
CviQI GTAC 3 cut(s) 199, 822, 838
DpnI GATC 5 cut(s) 57, 438, 662, 704, 737
DpnII GATC 5 cut(s) 55, 436, 660, 702, 735
Eco130I CCWWGG 1 cut(s) 382
Eco57I CTGAAG 1 cut(s) 38
EcoNI CCTNNNNNAGG 1 cut(s) 515
EcoRI GAATTC 1 cut(s) 884
EcoT14I CCWWGG 1 cut(s) 382
ErhI CCWWGG 1 cut(s) 382
FaeI CATG 5 cut(s) 41, 238, 296, 767, 999
FalI AAGNNNNNCTT 2 cut(s) 115, 147
FatI CATG 5 cut(s) 37, 234, 292, 763, 995
FauI CCCGC 1 cut(s) 675
FbaI TGATCA 1 cut(s) 660
FblI GTMKAC 1 cut(s) 585
Fnu4HI GCNGC 1 cut(s) 143
FokI GGATG 2 cut(s) 551, 741
Fsp4HI GCNGC 1 cut(s) 143
FspBI CTAG 1 cut(s) 324
GlaI GCGC 2 cut(s) 671, 673
GluI GCNGC 1 cut(s) 143
HaeIII GGCC 1 cut(s) 213
HapII CCGG 3 cut(s) 152, 334, 363
HhaI GCGC 2 cut(s) 672, 674
Hin1II CATG 5 cut(s) 41, 238, 296, 767, 999
Hin6I GCGC 2 cut(s) 670, 672
HinP1I GCGC 2 cut(s) 670, 672
HincII GTYRAC 1 cut(s) 586
HindII GTYRAC 1 cut(s) 586
HindIII AAGCTT 1 cut(s) 809
HinfI GANTC 3 cut(s) 103, 302, 980
HpaII CCGG 3 cut(s) 152, 334, 363
HphI GGTGA 2 cut(s) 370, 599
Hpy166II GTNNAC 4 cut(s) 86, 378, 586, 640
Hpy188III TCNNGA 5 cut(s) 281, 404, 733, 857, 889
Hpy8I GTNNAC 4 cut(s) 86, 378, 586, 640
HpyAV CCTTC 5 cut(s) 130, 178, 364, 452, 559
HpyCH4III ACNGT 4 cut(s) 264, 410, 596, 611
HpyCH4V TGCA 4 cut(s) 142, 292, 311, 572
HpyF10VI GCNNNNNNNGC 4 cut(s) 66, 148, 223, 569
Hsp92II CATG 5 cut(s) 41, 238, 296, 767, 999
HspAI GCGC 2 cut(s) 670, 672
Ksp22I TGATCA 1 cut(s) 660
Kzo9I GATC 5 cut(s) 55, 436, 660, 702, 735
LpnPI CCDG 5 cut(s) 165, 227, 347, 376, 746
Lsp1109I GCAGC 1 cut(s) 154
LweI GCATC 1 cut(s) 3
MaeI CTAG 1 cut(s) 324
MaeIII GTNAC 5 cut(s) 410, 479, 605, 614, 991
MalI GATC 5 cut(s) 57, 438, 662, 704, 737
MboI GATC 5 cut(s) 55, 436, 660, 702, 735
MfeI CAATTG 1 cut(s) 579
MhlI GDGCHC 1 cut(s) 807
MluCI AATT 6 cut(s) 371, 431, 579, 688, 884, 933
MmeI TCCRAC 1 cut(s) 957
MnlI CCTC 9 cut(s) 45, 285, 483, 511, 628, 690, 862, 889, 954
MseI TTAA 7 cut(s) 339, 369, 426, 492, 692, 903, 932
MslI CAYNNNNRTG 2 cut(s) 513, 612
MspI CCGG 3 cut(s) 152, 334, 363
MspR9I CCNGG 1 cut(s) 363
MunI CAATTG 1 cut(s) 579
Mva1269I GAATGC 1 cut(s) 945
MvnI CGCG 2 cut(s) 670, 672
MwoI GCNNNNNNNGC 4 cut(s) 66, 148, 223, 569
NciI CCSGG 1 cut(s) 363
NdeII GATC 5 cut(s) 55, 436, 660, 702, 735
NlaIII CATG 5 cut(s) 41, 238, 296, 767, 999
NmuCI GTSAC 3 cut(s) 410, 605, 614
NspI RCATGY 2 cut(s) 41, 296
OliI CACNNNNGTG 1 cut(s) 612
PauI GCGCGC 1 cut(s) 670
PcsI WCGNNNNNNNCGW 1 cut(s) 639
PctI GAATGC 1 cut(s) 945
PfeI GAWTC 3 cut(s) 103, 302, 980
PflMI CCANNNNNTGG 1 cut(s) 80
PkrI GCNGC 1 cut(s) 144
PsiI TTATAA 1 cut(s) 749
PteI GCGCGC 1 cut(s) 670
RsaI GTAC 3 cut(s) 200, 823, 839
RsaNI GTAC 3 cut(s) 199, 822, 838
RseI CAYNNNNRTG 2 cut(s) 513, 612
SalI GTCGAC 1 cut(s) 584
SaqAI TTAA 7 cut(s) 339, 369, 426, 492, 692, 903, 932
SatI GCNGC 1 cut(s) 143
Sau3AI GATC 5 cut(s) 55, 436, 660, 702, 735
ScrFI CCNGG 1 cut(s) 363
SduI GDGCHC 1 cut(s) 807
SetI ASST 8 cut(s) 66, 141, 513, 530, 570, 639, 813, 963
SfaNI GCATC 1 cut(s) 3
SfcI CTRYAG 1 cut(s) 595
SmiMI CAYNNNNRTG 2 cut(s) 513, 612
Sse9I AATT 6 cut(s) 371, 431, 579, 688, 884, 933
SsiI CCGC 3 cut(s) 149, 249, 668
SspI AATATT 2 cut(s) 79, 319
SspMI CTAG 1 cut(s) 324
StyD4I CCNGG 1 cut(s) 361
StyI CCWWGG 1 cut(s) 382
TaaI ACNGT 4 cut(s) 264, 410, 596, 611
TaqI TCGA 3 cut(s) 266, 300, 585
TasI AATT 6 cut(s) 371, 431, 579, 688, 884, 933
TatI WGTACW 1 cut(s) 198
TfiI GAWTC 3 cut(s) 103, 302, 980
Tru1I TTAA 7 cut(s) 339, 369, 426, 492, 692, 903, 932
Tru9I TTAA 7 cut(s) 339, 369, 426, 492, 692, 903, 932
TscAI CASTG 1 cut(s) 318
TseFI GTSAC 3 cut(s) 410, 605, 614
TseI GCWGC 1 cut(s) 142
Tsp45I GTSAC 3 cut(s) 410, 605, 614
TspRI CASTG 1 cut(s) 318
Van91I CCANNNNNTGG 1 cut(s) 80
XagI CCTNNNNNAGG 1 cut(s) 515
XapI RAATTY 3 cut(s) 431, 688, 884
XceI RCATGY 2 cut(s) 41, 296
XmiI GTMKAC 1 cut(s) 585
XspI CTAG 1 cut(s) 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.