RLG00000036539

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000563
Physical Location & Seq
Reverse (-)
81695724 .. 81697052
1329 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036539

Sequence Viewer

Length: 1122 bp
ATGGAATCAGACTGGAACCGCCGGGAGCCTGATCAGGTGCTACATGAGATTCACGGACCTATTCCAAGGAACTGCCAATTTTTCTTGGGTACATGTGATGGCGGTCTTATGTGGTTGGGATGTTCAGGATTGGATGTTACGCATTCTGCTTATACGTGTGTTACGGTGTTTCGGGTTTCTGTTTCATATGATATTGCTGGCAAACCAGTCATATCTGCCAATGTTGAGGCCAGTTCGGAAATAATAGATGCCGATAAATTCTGCGAAAGGAGCTCTCCCAAGCCTAAGTTTGAAGTTGCGCATAGTTTTCCTGAAGAAGGTCATCCAAGTCCAATTCCAAGGAGAATGACACATATAACTCTCGGTTCCAAATCGTATATGGTTGGGGGCGAAAGACTGGATCGAAGCCTGCATTGTGATGCCAATGGCAGATGTTTTCCTATGCCGAACTTGGATATTTATTCCTTTAATCCCACTCTCCCAAACCGTCCATTGATCACCATGTGCAACGGTGTCATTCCCACGTTGATTGATCCAAAAGCTAAGACCATTGCTATCGTGACCAGTATTGAGGAGAAAATATATGTTCTTACCAAAAGACCATATTTAGAAGAACTTGATGATGATCAGCCCCCCAAATTTAAGAACTTTTTGTGCATAACCACTTTGCTTGGGGGCACAAGCTTATTATTAGTAGCCAAGTTGGGTTCGTACATTTTTGATACTCACCAAGAGAAATGGGAGGATACCCCCCACGAATTCCCGAATGAGGGGTTTAAGGCTGTTGTAGAAGTTCGGGGATTTTTAATTGGAATGCCTCATAACGGCAAAGAGCTTGTTGCGTGTCAGTTGGATTCAAATGGTATCTTCAAGACATATAAGGTGTTACATGAACTGCAGGGAATATTCCGTACTTCTTCACTTGTTTTTGACTATTTCCTAGGTAAATGTGATGATGAACGTATATGGTTAGTGTATTCTGGCATGGATGGTCCAAATTATTGGAATACATGGGTAGTAGTGTTGCGAGTTTTCACCTCAATCGACAATGTTGGCAATTCAGTCCTCTCGTTCATTTCTATCTTTGTACGAAGAATGTGTCACAAGAGATTGATATTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

374

Amino Acids

42.16

Weight (kDa)

6.07

Isoelectric Point (pI)

38.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 300
AciI CCGC 2 cut(s) 19, 102
AclWI GGATC 2 cut(s) 408, 527
AcsI RAATTY 3 cut(s) 257, 638, 758
AcuI CTGAAG 1 cut(s) 333
AdeI CACNNNGTG 1 cut(s) 504
AfaI GTAC 4 cut(s) 91, 713, 913, 1089
AfiI CCNNNNNNNGG 4 cut(s) 317, 769, 770, 824
AflIII ACRYGT 2 cut(s) 92, 155
AgsI TTSAA 3 cut(s) 293, 858, 871
AluBI AGCT 4 cut(s) 273, 542, 684, 835
AluI AGCT 4 cut(s) 273, 542, 684, 835
Alw21I GWGCWC 1 cut(s) 275
AlwI GGATC 2 cut(s) 408, 527
AoxI GGCC 1 cut(s) 228
ApoI RAATTY 3 cut(s) 257, 638, 758
ArsI GACNNNNNNTTYG 2 cut(s) 1084, 1116
AspA2I CCTAGG 1 cut(s) 940
AspLEI GCGC 1 cut(s) 301
AspS9I GGNCC 2 cut(s) 56, 992
AsuC2I CCSGG 1 cut(s) 23
AsuHPI GGTGA 3 cut(s) 490, 719, 1027
AvaII GGWCC 2 cut(s) 56, 992
AvrII CCTAGG 1 cut(s) 940
BaeGI GKGCMC 1 cut(s) 680
BanII GRGCYC 1 cut(s) 275
Bbv12I GWGCWC 1 cut(s) 275
BccI CCATC 2 cut(s) 92, 983
BceAI ACGGC 1 cut(s) 841
BciVI GTATCC 1 cut(s) 739
BclI TGATCA 3 cut(s) 31, 495, 625
BcnI CCSGG 1 cut(s) 23
BfaI CTAG 1 cut(s) 941
BfmI CTRYAG 1 cut(s) 896
BfuI GTATCC 1 cut(s) 739
BlnI CCTAGG 1 cut(s) 940
Bme1390I CCNGG 1 cut(s) 23
Bme18I GGWCC 2 cut(s) 56, 992
BmgT120I GGNCC 2 cut(s) 56, 992
BmiI GGNNCC 3 cut(s) 17, 27, 367
BmrFI CCNGG 1 cut(s) 23
BmsI GCATC 2 cut(s) 238, 409
BpuMI CCSGG 1 cut(s) 23
BsaAI YACGTR 1 cut(s) 156
BsaBI GATNNNNATC 1 cut(s) 624
BsaJI CCNNGG 3 cut(s) 65, 338, 940
Bsc4I CCNNNNNNNGG 4 cut(s) 317, 769, 770, 824
Bse1I ACTGG 5 cut(s) 17, 206, 231, 402, 564
Bse3DI GCAATG 1 cut(s) 549
Bse8I GATNNNNATC 1 cut(s) 624
BseDI CCNNGG 3 cut(s) 65, 338, 940
BseGI GGATG 4 cut(s) 125, 139, 322, 994
BseJI GATNNNNATC 1 cut(s) 624
BseLI CCNNNNNNNGG 4 cut(s) 317, 769, 770, 824
BseMI GCAATG 1 cut(s) 549
BseNI ACTGG 5 cut(s) 17, 206, 231, 402, 564
BseRI GAGGAG 1 cut(s) 587
BseSI GKGCMC 1 cut(s) 680
BshFI GGCC 1 cut(s) 230
BsiHKAI GWGCWC 1 cut(s) 275
BsiSI CCGG 1 cut(s) 22
BslI CCNNNNNNNGG 4 cut(s) 317, 769, 770, 824
BsmI GAATGC 2 cut(s) 142, 819
BsnI GGCC 1 cut(s) 230
Bsp1286I GDGCHC 2 cut(s) 275, 680
Bsp143I GATC 5 cut(s) 31, 400, 495, 532, 625
BspACI CCGC 2 cut(s) 19, 102
BspANI GGCC 1 cut(s) 230
BspLI GGNNCC 3 cut(s) 17, 27, 367
BspMAI CTGCAG 1 cut(s) 900
BspPI GGATC 2 cut(s) 408, 527
BsrDI GCAATG 1 cut(s) 549
BsrI ACTGG 5 cut(s) 17, 206, 231, 402, 564
BssECI CCNNGG 3 cut(s) 65, 338, 940
BssMI GATC 5 cut(s) 31, 400, 495, 532, 625
BssT1I CCWWGG 3 cut(s) 65, 338, 940
Bst4CI ACNGT 3 cut(s) 166, 488, 512
BstBAI YACGTR 1 cut(s) 156
BstC8I GCNNGC 2 cut(s) 199, 410
BstDEI CTNAG 2 cut(s) 285, 543
BstENI CCTNNNNNAGG 1 cut(s) 315
BstF5I GGATG 4 cut(s) 125, 139, 322, 994
BstHHI GCGC 1 cut(s) 301
BstKTI GATC 5 cut(s) 34, 403, 498, 535, 628
BstMBI GATC 5 cut(s) 31, 400, 495, 532, 625
BstMWI GCNNNNNNNGC 1 cut(s) 270
BstNSI RCATGY 1 cut(s) 96
BstSCI CCNGG 1 cut(s) 21
BstSFI CTRYAG 1 cut(s) 896
BstSLI GKGCMC 1 cut(s) 680
BstXI CCANNNNNNTGG 1 cut(s) 1002
BsuI GTATCC 1 cut(s) 739
BsuRI GGCC 1 cut(s) 230
BtsCI GGATG 4 cut(s) 125, 139, 322, 994
Cac8I GCNNGC 2 cut(s) 199, 410
CfoI GCGC 1 cut(s) 301
Cfr13I GGNCC 2 cut(s) 56, 992
Csp6I GTAC 4 cut(s) 90, 712, 912, 1088
CspCI CAANNNNNGTGG 4 cut(s) 511, 546, 652, 687
CviAII CATG 6 cut(s) 44, 93, 502, 890, 985, 1011
CviQI GTAC 4 cut(s) 90, 712, 912, 1088
DdeI CTNAG 2 cut(s) 285, 543
DpnI GATC 5 cut(s) 33, 402, 497, 534, 627
DpnII GATC 5 cut(s) 31, 400, 495, 532, 625
DraIII CACNNNGTG 1 cut(s) 504
Ecl136II GAGCTC 1 cut(s) 273
Eco130I CCWWGG 3 cut(s) 65, 338, 940
Eco24I GRGCYC 1 cut(s) 275
Eco47I GGWCC 2 cut(s) 56, 992
Eco53kI GAGCTC 1 cut(s) 273
Eco57I CTGAAG 1 cut(s) 333
EcoICRI GAGCTC 1 cut(s) 273
EcoNI CCTNNNNNAGG 1 cut(s) 315
EcoRI GAATTC 1 cut(s) 758
EcoT14I CCWWGG 3 cut(s) 65, 338, 940
EcoT38I GRGCYC 1 cut(s) 275
ErhI CCWWGG 3 cut(s) 65, 338, 940
FaeI CATG 6 cut(s) 47, 96, 505, 893, 988, 1014
FatI CATG 6 cut(s) 43, 92, 501, 889, 984, 1010
FauNDI CATATG 1 cut(s) 187
FbaI TGATCA 3 cut(s) 31, 495, 625
FokI GGATG 4 cut(s) 132, 146, 309, 1001
FriOI GRGCYC 1 cut(s) 275
FspBI CTAG 1 cut(s) 941
FspI TGCGCA 1 cut(s) 300
GlaI GCGC 1 cut(s) 300
HaeIII GGCC 1 cut(s) 230
HapII CCGG 1 cut(s) 22
HhaI GCGC 1 cut(s) 301
Hin1II CATG 6 cut(s) 47, 96, 505, 893, 988, 1014
Hin6I GCGC 1 cut(s) 299
HinP1I GCGC 1 cut(s) 299
HindIII AAGCTT 1 cut(s) 682
HinfI GANTC 3 cut(s) 5, 49, 854
HpaII CCGG 1 cut(s) 22
HphI GGTGA 3 cut(s) 490, 719, 1027
Hpy188I TCNGA 2 cut(s) 10, 238
Hpy188III TCNNGA 5 cut(s) 126, 311, 559, 763, 871
HpyAV CCTTC 1 cut(s) 311
HpyCH4III ACNGT 3 cut(s) 166, 488, 512
HpyCH4IV ACGT 3 cut(s) 155, 524, 961
HpyCH4V TGCA 4 cut(s) 412, 507, 657, 898
HpyF10VI GCNNNNNNNGC 1 cut(s) 270
HpyF3I CTNAG 2 cut(s) 285, 543
HpySE526I ACGT 3 cut(s) 155, 524, 961
Hsp92II CATG 6 cut(s) 47, 96, 505, 893, 988, 1014
HspAI GCGC 1 cut(s) 299
Ksp22I TGATCA 3 cut(s) 31, 495, 625
Kzo9I GATC 5 cut(s) 31, 400, 495, 532, 625
LmnI GCTCC 2 cut(s) 25, 270
LweI GCATC 2 cut(s) 238, 409
MaeI CTAG 1 cut(s) 941
MaeII ACGT 3 cut(s) 155, 524, 961
MaeIII GTNAC 5 cut(s) 136, 160, 559, 885, 1100
MalI GATC 5 cut(s) 33, 402, 497, 534, 627
MboI GATC 5 cut(s) 31, 400, 495, 532, 625
MboII GAAGA 5 cut(s) 326, 623, 859, 909, 1104
MhlI GDGCHC 2 cut(s) 275, 680
MluCI AATT 8 cut(s) 77, 257, 333, 638, 758, 807, 997, 1057
MmeI TCCRAC 1 cut(s) 831
MnlI CCTC 7 cut(s) 220, 565, 736, 763, 828, 1048, 1076
MseI TTAA 4 cut(s) 468, 642, 777, 806
MslI CAYNNNNRTG 1 cut(s) 417
MspI CCGG 1 cut(s) 22
MspR9I CCNGG 1 cut(s) 23
Mva1269I GAATGC 2 cut(s) 142, 819
MwoI GCNNNNNNNGC 1 cut(s) 270
NciI CCSGG 1 cut(s) 23
NdeI CATATG 1 cut(s) 187
NdeII GATC 5 cut(s) 31, 400, 495, 532, 625
NlaIII CATG 6 cut(s) 47, 96, 505, 893, 988, 1014
NlaIV GGNNCC 3 cut(s) 17, 27, 367
NmuCI GTSAC 2 cut(s) 559, 1100
NsbI TGCGCA 1 cut(s) 300
NspI RCATGY 1 cut(s) 96
PciI ACATGT 1 cut(s) 92
PctI GAATGC 2 cut(s) 142, 819
PfeI GAWTC 3 cut(s) 5, 49, 854
Ppu21I YACGTR 1 cut(s) 156
PscI ACATGT 1 cut(s) 92
Psp124BI GAGCTC 1 cut(s) 275
PspN4I GGNNCC 3 cut(s) 17, 27, 367
PspPI GGNCC 2 cut(s) 56, 992
PstI CTGCAG 1 cut(s) 900
RsaI GTAC 4 cut(s) 91, 713, 913, 1089
RsaNI GTAC 4 cut(s) 90, 712, 912, 1088
RseI CAYNNNNRTG 1 cut(s) 417
SacI GAGCTC 1 cut(s) 275
SaqAI TTAA 4 cut(s) 468, 642, 777, 806
Sau3AI GATC 5 cut(s) 31, 400, 495, 532, 625
Sau96I GGNCC 2 cut(s) 56, 992
ScrFI CCNGG 1 cut(s) 23
SduI GDGCHC 2 cut(s) 275, 680
SfaNI GCATC 2 cut(s) 238, 409
SfcI CTRYAG 1 cut(s) 896
SinI GGWCC 2 cut(s) 56, 992
SmiMI CAYNNNNRTG 1 cut(s) 417
Sse9I AATT 8 cut(s) 77, 257, 333, 638, 758, 807, 997, 1057
SsiI CCGC 2 cut(s) 19, 102
SspI AATATT 1 cut(s) 906
SspMI CTAG 1 cut(s) 941
SstI GAGCTC 1 cut(s) 275
StyD4I CCNGG 1 cut(s) 21
StyI CCWWGG 3 cut(s) 65, 338, 940
TaaI ACNGT 3 cut(s) 166, 488, 512
TaiI ACGT 3 cut(s) 158, 527, 964
TaqI TCGA 2 cut(s) 403, 1044
TasI AATT 8 cut(s) 77, 257, 333, 638, 758, 807, 997, 1057
TfiI GAWTC 3 cut(s) 5, 49, 854
Tru1I TTAA 4 cut(s) 468, 642, 777, 806
Tru9I TTAA 4 cut(s) 468, 642, 777, 806
TseFI GTSAC 2 cut(s) 559, 1100
Tsp45I GTSAC 2 cut(s) 559, 1100
TspDTI ATGAA 4 cut(s) 174, 906, 972, 1063
TspGWI ACGGA 2 cut(s) 69, 899
VpaK11BI GGWCC 2 cut(s) 56, 992
XagI CCTNNNNNAGG 1 cut(s) 315
XapI RAATTY 3 cut(s) 257, 638, 758
XceI RCATGY 1 cut(s) 96
XcmI CCANNNNNNNNNTGG 1 cut(s) 376
XmaJI CCTAGG 1 cut(s) 940
XspI CTAG 1 cut(s) 941
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.