Rh4AG178500

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
Physical Location & Seq
Forward (+)
44803221 .. 44803697
477 bp
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UTR
Exon/CDS
Intron
Rh4AG178500.1

Sequence Viewer

Length: 477 bp
ATGCCTTATAAGCGCCAAGAACTTGTTGCTTACCATTTGGATTCGAATGGGATTCCCAAACTCTCGAAGGTGCTACACGAGCTGCAAGAGATATTTAGCTCTTGTTTACTTGTCTCCGACTGTTTTCTTGGTAAATATGATGGTGATCGTATGTGGCTGGTGTATTCTGCGCAGGATAGTATGCAATTTTGGCATGCGCGTGTAGCGATGTTTCATGTTTTCATCTCTAATGACTTTGATGGAAATCAAGTCCTCTGTGCAGATCTTGAGGCTGCACAATTTTTTCATTTGGATAGATTTATTAGCTCTGCTTTCACTTATCATGGCCCAAACTCTCGAAGGTGCTACACGAGCATCAAGAGATATTTAGCTCTTGTTTACTTGTCTCCGACTGTTTTCTTAGTAAATATGATGGTGATCGTATGTGGCTGGTGGATTCTGCACAGGATAGTATGCAATTTTGGCATGCGCGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

158

Amino Acids

18.46

Weight (kDa)

7.66

Isoelectric Point (pI)

34.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 9
Acc16I TGCGCA 1 cut(s) 171
AccII CGCG 2 cut(s) 199, 471
AluBI AGCT 4 cut(s) 82, 99, 306, 371
AluI AGCT 4 cut(s) 82, 99, 306, 371
Alw26I GTCTC 2 cut(s) 118, 390
AoxI GGCC 1 cut(s) 325
ApeKI GCWGC 2 cut(s) 82, 272
AspLEI GCGC 4 cut(s) 15, 172, 199, 471
AspS9I GGNCC 1 cut(s) 326
AsuHPI GGTGA 2 cut(s) 155, 427
AsuII TTCGAA 1 cut(s) 44
BauI CACGAG 2 cut(s) 77, 349
BbvI GCAGC 2 cut(s) 69, 259
BccI CCATC 3 cut(s) 134, 233, 406
BcoDI GTCTC 2 cut(s) 118, 390
BfoI RGCGCY 1 cut(s) 16
BglII AGATCT 1 cut(s) 262
BisI GCNGC 2 cut(s) 83, 273
BlsI GCNGC 2 cut(s) 84, 274
BmgT120I GGNCC 1 cut(s) 326
BmsI GCATC 1 cut(s) 363
Bpu14I TTCGAA 1 cut(s) 44
BpuEI CTTGAG 1 cut(s) 287
BsaBI GATNNNNATC 3 cut(s) 144, 243, 416
Bse8I GATNNNNATC 3 cut(s) 144, 243, 416
BseJI GATNNNNATC 3 cut(s) 144, 243, 416
BseXI GCAGC 2 cut(s) 69, 259
BsgI GTGCAG 3 cut(s) 258, 279, 425
Bsh1236I CGCG 2 cut(s) 199, 471
BshFI GGCC 1 cut(s) 327
BsmAI GTCTC 2 cut(s) 118, 390
BsnI GGCC 1 cut(s) 327
Bsp119I TTCGAA 1 cut(s) 44
Bsp143I GATC 3 cut(s) 145, 262, 417
BspANI GGCC 1 cut(s) 327
BspFNI CGCG 2 cut(s) 199, 471
BspT104I TTCGAA 1 cut(s) 44
BssMI GATC 3 cut(s) 145, 262, 417
BssSI CACGAG 2 cut(s) 77, 349
Bst2BI CACGAG 2 cut(s) 77, 349
Bst4CI ACNGT 2 cut(s) 122, 394
BstBI TTCGAA 1 cut(s) 44
BstC8I GCNNGC 2 cut(s) 195, 467
BstDEI CTNAG 1 cut(s) 400
BstFNI CGCG 2 cut(s) 199, 471
BstH2I RGCGCY 1 cut(s) 16
BstHHI GCGC 4 cut(s) 15, 172, 199, 471
BstKTI GATC 3 cut(s) 148, 265, 420
BstMAI GTCTC 2 cut(s) 118, 390
BstMBI GATC 3 cut(s) 145, 262, 417
BstMWI GCNNNNNNNGC 6 cut(s) 10, 79, 190, 203, 351, 462
BstNSI RCATGY 2 cut(s) 197, 469
BstUI CGCG 2 cut(s) 199, 471
BstV1I GCAGC 2 cut(s) 69, 259
BstX2I RGATCY 1 cut(s) 262
BstYI RGATCY 1 cut(s) 262
BsuRI GGCC 1 cut(s) 327
BtgZI GCGATG 1 cut(s) 221
Cac8I GCNNGC 2 cut(s) 195, 467
CfoI GCGC 4 cut(s) 15, 172, 199, 471
Cfr13I GGNCC 1 cut(s) 326
CviAII CATG 4 cut(s) 194, 215, 323, 466
CviJI RGCY 8 cut(s) 82, 99, 157, 272, 306, 327, 371, 429
CviKI_1 RGCY 8 cut(s) 82, 99, 157, 272, 306, 327, 371, 429
DdeI CTNAG 1 cut(s) 400
DpnI GATC 3 cut(s) 147, 264, 419
DpnII GATC 3 cut(s) 145, 262, 417
FaeI CATG 4 cut(s) 197, 218, 326, 469
FatI CATG 4 cut(s) 193, 214, 322, 465
Fnu4HI GCNGC 2 cut(s) 83, 273
Fsp4HI GCNGC 2 cut(s) 83, 273
FspI TGCGCA 1 cut(s) 171
GlaI GCGC 4 cut(s) 14, 171, 198, 470
GluI GCNGC 2 cut(s) 83, 273
HaeII RGCGCY 1 cut(s) 16
HaeIII GGCC 1 cut(s) 327
HhaI GCGC 4 cut(s) 15, 172, 199, 471
Hin1II CATG 4 cut(s) 197, 218, 326, 469
Hin6I GCGC 4 cut(s) 13, 170, 197, 469
HinP1I GCGC 4 cut(s) 13, 170, 197, 469
HinfI GANTC 3 cut(s) 41, 52, 436
HphI GGTGA 2 cut(s) 155, 427
Hpy166II GTNNAC 2 cut(s) 107, 379
Hpy188I TCNGA 2 cut(s) 118, 390
Hpy188III TCNNGA 4 cut(s) 64, 266, 336, 358
Hpy8I GTNNAC 2 cut(s) 107, 379
HpyAV CCTTC 2 cut(s) 61, 333
HpyCH4III ACNGT 2 cut(s) 122, 394
HpyCH4V TGCA 6 cut(s) 85, 184, 260, 275, 442, 456
HpyF10VI GCNNNNNNNGC 6 cut(s) 10, 79, 190, 203, 351, 462
HpyF3I CTNAG 1 cut(s) 400
Hsp92II CATG 4 cut(s) 197, 218, 326, 469
HspAI GCGC 4 cut(s) 13, 170, 197, 469
Kzo9I GATC 3 cut(s) 145, 262, 417
LpnPI CCDG 4 cut(s) 143, 158, 415, 430
Lsp1109I GCAGC 2 cut(s) 69, 259
LweI GCATC 1 cut(s) 363
MalI GATC 3 cut(s) 147, 264, 419
MboI GATC 3 cut(s) 145, 262, 417
MflI RGATCY 1 cut(s) 262
MluCI AATT 3 cut(s) 185, 278, 457
MmeI TCCRAC 2 cut(s) 141, 413
MnlI CCTC 2 cut(s) 262, 263
MslI CAYNNNNRTG 1 cut(s) 198
MvnI CGCG 2 cut(s) 199, 471
MwoI GCNNNNNNNGC 6 cut(s) 10, 79, 190, 203, 351, 462
NdeII GATC 3 cut(s) 145, 262, 417
NlaIII CATG 4 cut(s) 197, 218, 326, 469
NsbI TGCGCA 1 cut(s) 171
NspI RCATGY 2 cut(s) 197, 469
NspV TTCGAA 1 cut(s) 44
PaeI GCATGC 2 cut(s) 197, 469
PfeI GAWTC 3 cut(s) 41, 52, 436
PkrI GCNGC 2 cut(s) 84, 274
PsiI TTATAA 1 cut(s) 9
PspPI GGNCC 1 cut(s) 326
PsuI RGATCY 1 cut(s) 262
RseI CAYNNNNRTG 1 cut(s) 198
SatI GCNGC 2 cut(s) 83, 273
Sau3AI GATC 3 cut(s) 145, 262, 417
Sau96I GGNCC 1 cut(s) 326
SetI ASST 6 cut(s) 72, 84, 101, 308, 344, 373
SfaNI GCATC 1 cut(s) 363
SfuI TTCGAA 1 cut(s) 44
SmiMI CAYNNNNRTG 1 cut(s) 198
SmlI CTYRAG 1 cut(s) 266
SmoI CTYRAG 1 cut(s) 266
SphI GCATGC 2 cut(s) 197, 469
Sse9I AATT 3 cut(s) 185, 278, 457
TaaI ACNGT 2 cut(s) 122, 394
TaqI TCGA 3 cut(s) 44, 65, 337
TasI AATT 3 cut(s) 185, 278, 457
TfiI GAWTC 3 cut(s) 41, 52, 436
TseI GCWGC 2 cut(s) 82, 272
TspDTI ATGAA 3 cut(s) 203, 211, 275
XceI RCATGY 2 cut(s) 197, 469
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.