Rh5AG497000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000563
Physical Location & Seq
Reverse (-)
84407692 .. 84408540
849 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG497000.1

Sequence Viewer

Length: 849 bp
ATGCCGGACCATATATGCCGTCTAAATATTGATGAATTCTGCAAAAGAAACTCTGGGAATCCGTTGCTATTTGAATGCTTGTATGACGATGCTTCTCATCCTGACGGCGATGATTACTATCATCCAAGTAAAATTCCCACTGGACAACATATAAAAATTCCCCTAGATGGAAGACACACACTTGTGGGTTCAAAACTGTACATTGAGGGTTCCGATCATTCTTCTCCTGACTGTGATCTAGTGACTTATTGCTTTGATCCAACTGACCCAGAGGGTCCATCCCTTCGCCAATGCGAGTGTTTCATTCCCGAGGACAAATTCTATGTTCTGGGGGAAGCTGATGGTTATGGGTATCCATCTCTTACGGTTTTTGGTGAAGATCAATCTTGGAAAGCACTCCCTCATGATGTTCATGCTGTTGTAGAATTCAAGGGCTTTTTAATTGCCGTACCTCAGATCGGAAAAAGGCTTGTTGCTTATCGGTGGGATTCAAATGGGGTCCCCAAGCTGTATCGGGTACTACATGAGCTTGATGTGATATTCTGCCCTTTCTTACTCGCTAGTAATTTTGCAATGGGTAAATGTGACGGTGGCCGTATGTGGTTGGTGTATGTTGGAAAGGATCTAATGGACTGTCGGTATACGCGTGTAGCAGTGTTTCGAGTTTCCATCTCGAACGACCCTGCTGGCAATCCGGTCCTCTCTGCTGATCTCGAGGCTGCAGAGTTCTATTACTTCCATAATTGCTCTGCCAGTAGTATCAACTTAAGTTTCGCCTTGTGCCATCAGCCAAACGGCGATGACAAAAAAAACTTCTGTGGAACAATTGTTGATCATCCACGATGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

282

Amino Acids

31.68

Weight (kDa)

5.19

Isoelectric Point (pI)

38.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 641
AccII CGCG 1 cut(s) 646
AclWI GGATC 2 cut(s) 251, 630
AcoI YGGCCR 1 cut(s) 592
AcsI RAATTY 5 cut(s) 35, 132, 156, 317, 425
AfaI GTAC 3 cut(s) 200, 450, 519
AfiI CCNNNNNNNGG 2 cut(s) 167, 458
AflII CTTAAG 1 cut(s) 766
AflIII ACRYGT 1 cut(s) 644
AgsI TTSAA 4 cut(s) 74, 192, 430, 492
AleI CACNNNNGTG 1 cut(s) 182
AluBI AGCT 3 cut(s) 338, 508, 529
AluI AGCT 3 cut(s) 338, 508, 529
AlwI GGATC 2 cut(s) 251, 630
Ama87I CYCGRG 2 cut(s) 308, 713
AoxI GGCC 1 cut(s) 592
ApeKI GCWGC 1 cut(s) 719
ApoI RAATTY 5 cut(s) 35, 132, 156, 317, 425
AspS9I GGNCC 4 cut(s) 7, 275, 499, 697
AsuHPI GGTGA 1 cut(s) 386
AvaI CYCGRG 2 cut(s) 308, 713
AvaII GGWCC 4 cut(s) 7, 275, 499, 697
BbsI GAAGAC 1 cut(s) 178
BbvI GCAGC 1 cut(s) 706
BccI CCATC 6 cut(s) 161, 286, 335, 364, 677, 792
BceAI ACGGC 5 cut(s) 3, 121, 431, 579, 811
BciVI GTATCC 1 cut(s) 363
BclI TGATCA 1 cut(s) 832
BfaI CTAG 3 cut(s) 164, 239, 561
BfmI CTRYAG 1 cut(s) 720
BfrI CTTAAG 1 cut(s) 766
BfuI GTATCC 1 cut(s) 363
BisI GCNGC 1 cut(s) 720
BlsI GCNGC 1 cut(s) 721
Bme18I GGWCC 4 cut(s) 7, 275, 499, 697
BmeT110I CYCGRG 2 cut(s) 308, 713
BmgT120I GGNCC 4 cut(s) 7, 275, 499, 697
BmiI GGNNCC 4 cut(s) 211, 276, 500, 501
BmsI GCATC 2 cut(s) 79, 833
BpiI GAAGAC 1 cut(s) 178
BsaBI GATNNNNATC 1 cut(s) 117
BsaJI CCNNGG 1 cut(s) 309
BsaWI WCCGGW 1 cut(s) 694
Bsc4I CCNNNNNNNGG 2 cut(s) 167, 458
Bse1I ACTGG 2 cut(s) 145, 753
Bse3DI GCAATG 1 cut(s) 579
Bse8I GATNNNNATC 1 cut(s) 117
BseDI CCNNGG 1 cut(s) 309
BseGI GGATG 4 cut(s) 97, 121, 278, 835
BseJI GATNNNNATC 1 cut(s) 117
BseLI CCNNNNNNNGG 2 cut(s) 167, 458
BseMI GCAATG 1 cut(s) 579
BseMII CTCAG 1 cut(s) 467
BseNI ACTGG 2 cut(s) 145, 753
BseXI GCAGC 1 cut(s) 706
Bsh1236I CGCG 1 cut(s) 646
BshFI GGCC 1 cut(s) 594
BsiHKCI CYCGRG 2 cut(s) 308, 713
BsiSI CCGG 2 cut(s) 5, 695
BslFI GGGAC 1 cut(s) 485
BslI CCNNNNNNNGG 2 cut(s) 167, 458
BsmFI GGGAC 1 cut(s) 485
BsmI GAATGC 1 cut(s) 80
BsnI GGCC 1 cut(s) 594
BsoBI CYCGRG 2 cut(s) 308, 713
Bsp1407I TGTACA 1 cut(s) 198
Bsp143I GATC 8 cut(s) 214, 235, 256, 379, 456, 622, 709, 832
BspANI GGCC 1 cut(s) 594
BspCNI CTCAG 1 cut(s) 466
BspFNI CGCG 1 cut(s) 646
BspHI TCATGA 1 cut(s) 403
BspLI GGNNCC 4 cut(s) 211, 276, 500, 501
BspMAI CTGCAG 1 cut(s) 724
BspPI GGATC 2 cut(s) 251, 630
BspTI CTTAAG 1 cut(s) 766
BsrDI GCAATG 1 cut(s) 579
BsrGI TGTACA 1 cut(s) 198
BsrI ACTGG 2 cut(s) 145, 753
BssECI CCNNGG 1 cut(s) 309
BssMI GATC 8 cut(s) 214, 235, 256, 379, 456, 622, 709, 832
BssNAI GTATAC 1 cut(s) 642
Bst1107I GTATAC 1 cut(s) 642
Bst4CI ACNGT 5 cut(s) 198, 233, 367, 590, 635
BstAFI CTTAAG 1 cut(s) 766
BstAUI TGTACA 1 cut(s) 198
BstC8I GCNNGC 1 cut(s) 688
BstDEI CTNAG 1 cut(s) 453
BstF5I GGATG 4 cut(s) 97, 121, 278, 835
BstFNI CGCG 1 cut(s) 646
BstKTI GATC 8 cut(s) 217, 238, 259, 382, 459, 625, 712, 835
BstMBI GATC 8 cut(s) 214, 235, 256, 379, 456, 622, 709, 832
BstSFI CTRYAG 1 cut(s) 720
BstUI CGCG 1 cut(s) 646
BstV1I GCAGC 1 cut(s) 706
BstV2I GAAGAC 1 cut(s) 178
BstX2I RGATCY 1 cut(s) 622
BstYI RGATCY 1 cut(s) 622
BstZ17I GTATAC 1 cut(s) 642
BsuI GTATCC 1 cut(s) 363
BsuRI GGCC 1 cut(s) 594
BtgZI GCGATG 2 cut(s) 123, 813
BtsCI GGATG 4 cut(s) 97, 121, 278, 835
BtsI GCAGTG 1 cut(s) 660
BtsIMutI CAGTG 2 cut(s) 138, 660
Cac8I GCNNGC 1 cut(s) 688
CciI TCATGA 1 cut(s) 403
Cfr13I GGNCC 4 cut(s) 7, 275, 499, 697
Csp6I GTAC 3 cut(s) 199, 449, 518
CviAII CATG 3 cut(s) 404, 413, 524
CviJI RGCY 8 cut(s) 338, 435, 469, 508, 529, 594, 719, 790
CviKI_1 RGCY 8 cut(s) 338, 435, 469, 508, 529, 594, 719, 790
CviQI GTAC 3 cut(s) 199, 449, 518
DdeI CTNAG 1 cut(s) 453
DpnI GATC 8 cut(s) 216, 237, 258, 381, 458, 624, 711, 834
DpnII GATC 8 cut(s) 214, 235, 256, 379, 456, 622, 709, 832
EaeI YGGCCR 1 cut(s) 592
Eco47I GGWCC 4 cut(s) 7, 275, 499, 697
Eco88I CYCGRG 2 cut(s) 308, 713
EcoO109I RGGNCCY 1 cut(s) 499
EcoRI GAATTC 2 cut(s) 35, 425
FaeI CATG 3 cut(s) 407, 416, 527
FaqI GGGAC 1 cut(s) 485
FatI CATG 3 cut(s) 403, 412, 523
FbaI TGATCA 1 cut(s) 832
FblI GTMKAC 1 cut(s) 641
Fnu4HI GCNGC 1 cut(s) 720
FokI GGATG 4 cut(s) 84, 108, 265, 822
Fsp4HI GCNGC 1 cut(s) 720
FspBI CTAG 3 cut(s) 164, 239, 561
GluI GCNGC 1 cut(s) 720
HaeIII GGCC 1 cut(s) 594
HapII CCGG 2 cut(s) 5, 695
Hin1II CATG 3 cut(s) 407, 416, 527
HinfI GANTC 2 cut(s) 58, 488
HpaII CCGG 2 cut(s) 5, 695
HphI GGTGA 1 cut(s) 386
Hpy166II GTNNAC 1 cut(s) 642
Hpy188I TCNGA 3 cut(s) 214, 456, 461
Hpy188III TCNNGA 6 cut(s) 101, 227, 308, 404, 673, 713
Hpy8I GTNNAC 1 cut(s) 642
HpyAV CCTTC 1 cut(s) 293
HpyCH4III ACNGT 5 cut(s) 198, 233, 367, 590, 635
HpyCH4V TGCA 3 cut(s) 42, 572, 722
HpyF3I CTNAG 1 cut(s) 453
Hsp92II CATG 3 cut(s) 407, 416, 527
KflI GGGWCCC 1 cut(s) 499
Ksp22I TGATCA 1 cut(s) 832
Kzo9I GATC 8 cut(s) 214, 235, 256, 379, 456, 622, 709, 832
Lsp1109I GCAGC 1 cut(s) 706
LweI GCATC 2 cut(s) 79, 833
MaeI CTAG 3 cut(s) 164, 239, 561
MaeIII GTNAC 2 cut(s) 241, 584
MalI GATC 8 cut(s) 216, 237, 258, 381, 458, 624, 711, 834
MboI GATC 8 cut(s) 214, 235, 256, 379, 456, 622, 709, 832
MboII GAAGA 3 cut(s) 183, 213, 389
MfeI CAATTG 1 cut(s) 825
MflI RGATCY 1 cut(s) 622
MluCI AATT 9 cut(s) 35, 132, 156, 317, 425, 441, 565, 742, 825
MluI ACGCGT 1 cut(s) 644
MmeI TCCRAC 2 cut(s) 284, 595
MnlI CCTC 7 cut(s) 199, 265, 304, 411, 462, 709, 710
MseI TTAA 2 cut(s) 440, 767
MslI CAYNNNNRTG 1 cut(s) 182
MspCI CTTAAG 1 cut(s) 766
MspI CCGG 2 cut(s) 5, 695
MunI CAATTG 1 cut(s) 825
Mva1269I GAATGC 1 cut(s) 80
MvnI CGCG 1 cut(s) 646
NdeII GATC 8 cut(s) 214, 235, 256, 379, 456, 622, 709, 832
NlaIII CATG 3 cut(s) 407, 416, 527
NlaIV GGNNCC 4 cut(s) 211, 276, 500, 501
NmuCI GTSAC 2 cut(s) 241, 584
OliI CACNNNNGTG 1 cut(s) 182
PaeR7I CTCGAG 1 cut(s) 713
PagI TCATGA 1 cut(s) 403
PcsI WCGNNNNNNNCGW 1 cut(s) 643
PctI GAATGC 1 cut(s) 80
PfeI GAWTC 2 cut(s) 58, 488
PkrI GCNGC 1 cut(s) 721
PpuMI RGGWCCY 1 cut(s) 499
Psp5II RGGWCCY 1 cut(s) 499
PspN4I GGNNCC 4 cut(s) 211, 276, 500, 501
PspPI GGNCC 4 cut(s) 7, 275, 499, 697
PspPPI RGGWCCY 1 cut(s) 499
PstI CTGCAG 1 cut(s) 724
PsuI RGATCY 1 cut(s) 622
RsaI GTAC 3 cut(s) 200, 450, 519
RsaNI GTAC 3 cut(s) 199, 449, 518
RseI CAYNNNNRTG 1 cut(s) 182
SaqAI TTAA 2 cut(s) 440, 767
SatI GCNGC 1 cut(s) 720
Sau3AI GATC 8 cut(s) 214, 235, 256, 379, 456, 622, 709, 832
Sau96I GGNCC 4 cut(s) 7, 275, 499, 697
SetI ASST 4 cut(s) 340, 454, 510, 531
SfaNI GCATC 2 cut(s) 79, 833
SfcI CTRYAG 1 cut(s) 720
Sfr274I CTCGAG 1 cut(s) 713
SinI GGWCC 4 cut(s) 7, 275, 499, 697
SlaI CTCGAG 1 cut(s) 713
SmiMI CAYNNNNRTG 1 cut(s) 182
SmlI CTYRAG 2 cut(s) 713, 766
SmoI CTYRAG 2 cut(s) 713, 766
Sse9I AATT 9 cut(s) 35, 132, 156, 317, 425, 441, 565, 742, 825
SspI AATATT 1 cut(s) 28
SspMI CTAG 3 cut(s) 164, 239, 561
TaaI ACNGT 5 cut(s) 198, 233, 367, 590, 635
TaqI TCGA 3 cut(s) 661, 674, 714
TasI AATT 9 cut(s) 35, 132, 156, 317, 425, 441, 565, 742, 825
TatI WGTACW 1 cut(s) 198
TfiI GAWTC 2 cut(s) 58, 488
Tru1I TTAA 2 cut(s) 440, 767
Tru9I TTAA 2 cut(s) 440, 767
TscAI CASTG 2 cut(s) 145, 660
TseFI GTSAC 2 cut(s) 241, 584
TseI GCWGC 1 cut(s) 719
Tsp45I GTSAC 2 cut(s) 241, 584
TspDTI ATGAA 3 cut(s) 48, 292, 401
TspGWI ACGGA 1 cut(s) 51
TspRI CASTG 2 cut(s) 145, 660
Vha464I CTTAAG 1 cut(s) 766
VpaK11BI GGWCC 4 cut(s) 7, 275, 499, 697
XapI RAATTY 5 cut(s) 35, 132, 156, 317, 425
XhoI CTCGAG 1 cut(s) 713
XmiI GTMKAC 1 cut(s) 641
XspI CTAG 3 cut(s) 164, 239, 561
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.