Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0000563

Physical Location & Seq

Genomic Coordinates Reverse (-)

30287319 .. 30288386

Gene Structure 1068 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g30890.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGTCGATGAAGAAGGATACGTTCTTGTACTTGAATATGAACGACCGAATTTTTGGTCTAAATCTCAGAGAGTTCACCGAAAGACACTCTTCCAAGCCTGAGTTTGAAGTTGTTCAGGTTTTGAATAATCCAAATGGCCGTCGTCCAGGTAAAAATTTCAACGTCAGAGAGAAAGATTGTATGACTGTGTTTGATTCCAAATTGTATATGATGACTGAAACTAGGCGCGGGGCTGATGTAGGTTTTGAGTTGAATGTTTATTCTTTTGATCCCACTGATCCGGATGACCGCAAATCCATCCGTCTATGTGACAAAAGTGCCGCACCCAGATTCATCGATACTAATTATCCTATAGTGTTCACCCTCGACGAGAAAATCTATGTTCTTGGAAAGCCATCATATTCATATCGCAGGCGAGAAGAAGAGACACAACCTTTTTGGGTGTTTGATCCTTTTCACGAATTCTGGAAACAACTCCCTCATCCTCCTCTCTACAATTTTGATAATTGTAGTTATGAGGTTTCTTATGGTCACAAGCTTGTTGTTTATACATACGATCAAAGATACGTTTTCGATGCTCACCAAGAGAGATGGGAGGATTTAAAATGTCCTCGAGCTCGTAGTGCTTATCAGCACAACTTTGGTGCAATTGTAGAATTTGATGATGGCTTTTTAATTGCTGTGCCAGAGAAGAAACAGAAGAAGAGCTTTGAGCTTGTTGCTTATAAGTTCGATGTGAAGGGGATCCCTCAGCCGCATCAGGTGCTACACGAGCTTAACGGGATGTTCTCATCTCGTCCTTTGTTAAGTAACCCTAAGGTGCTTTTGGGTAAATATGATGATAACCTTCTGTGGTTGGTCTATTCTGGCAAGGATAATGTCCAACGGTTTACTTGTATAGGTGTCGCAGCGTTTCGAGTTTCCATGTCATATGACCTGCTGGCAATGAAGTGTTTTCGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006479 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016278 GO:0016279 GO:0016740 GO:0016741 GO:0018022 GO:0018023 GO:0018026 GO:0018193 GO:0018205 GO:0019538 GO:0032259 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rubis-subs-bind SET

Protein Analysis

321

Amino Acids

37.81

Weight (kDa)

8.08

Isoelectric Point (pI)

38.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Kelch_FKB95	PF25210	114 - 203	5.6e-09	FKB95, Kelch-repeats domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000563)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g40701 FvH4_3g40701 FvH4_3g42210 FvH4_4g30821 FvH4_4g30830 FvH4_4g30861 FvH4_4g30870 FvH4_4g30880 FvH4_4g30890 FvH4_6g30071 FvH4_6g44331 FvH4_6g44332 FvH4_6g44333
malus_domestica	MD15G1041200.v1.1 MD15G1041700.v1.1 MD15G1401000.v1.1
prunus_persica	Prupe.5G008800_v2.0.a1 Prupe.5G157900_v2.0.a1
pyrus_communis	pycom05g01010 pycom15g03820 pycom15g03830 pycom15g03850 pycom15g04240
rosa_chinensis	RchiOBHm_Chr5g0075231
rosa_laevigata	RLG00000008231 RLG00000008232 RLG00000008235 RLG00000008239 RLG00000008240 RLG00000008241 RLG00000021260 RLG00000021269 RLG00000036539 RLG00000036540 RLG00000037046
rosa_multiflora	Rmu_sc0000955.1_g000047 Rmu_sc0006420.1_g000034
rosa_roxburghii	Rroxscaffold_1G00000870 Rroxscaffold_1G00000880 Rroxscaffold_1G00006320 Rroxscaffold_2G00088990 Rroxscaffold_2G00089000 Rroxscaffold_2G00089010 Rroxscaffold_2G00089100 Rroxscaffold_5G00357190 Rroxscaffold_5G00357200
rosa_rugosa	Rorug04G0118300 Rorug04G0118400 Rorug05G0437400 Rorug05G0439900
rosa_samantha	Rh2AG552900 Rh2AG553000 Rh2BG566800 Rh2CG536900 Rh2DG575800 Rh2DG575900 Rh4AG177300 Rh4AG177400 Rh4AG178100 Rh4AG178300 Rh4AG178400 Rh4AG178500 Rh4BG177100 Rh4BG177200 Rh4BG177700 Rh4CG188300 Rh4CG188700 Rh4CG188800 Rh4CG189000 Rh4CG189100 Rh5AG494400 Rh5AG497000 Rh5AG537400 Rh5BG515800 Rh5BG515900 Rh5BG516000 Rh5CG539600 Rh5CG539700 Rh5CG539800 Rh5DG528600 Rh5DG528700
rosa_wichuraiana	Rw2G045740 Rw4G014830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	726
Acc36I	ACCTGC	1 cut(s)	945
AccII	CGCG	1 cut(s)	228
AccIII	TCCGGA	1 cut(s)	280
AciI	CCGC	4 cut(s)	228, 289, 321, 755
AclWI	GGATC	5 cut(s)	263, 272, 443, 739, 752
AcoI	YGGCCR	1 cut(s)	136
AcsI	RAATTY	4 cut(s)	48, 154, 461, 656
AfaI	GTAC	1 cut(s)	29
AgsI	TTSAA	5 cut(s)	34, 107, 124, 160, 253
AjnI	CCWGG	1 cut(s)	145
AluBI	AGCT	5 cut(s)	538, 617, 708, 715, 775
AluI	AGCT	5 cut(s)	538, 617, 708, 715, 775
Alw21I	GWGCWC	1 cut(s)	619
Alw26I	GTCTC	1 cut(s)	419
AlwI	GGATC	5 cut(s)	263, 272, 443, 739, 752
Ama87I	CYCGRG	1 cut(s)	612
Aor13HI	TCCGGA	1 cut(s)	280
AoxI	GGCC	1 cut(s)	136
ApeKI	GCWGC	1 cut(s)	908
ApoI	RAATTY	4 cut(s)	48, 154, 461, 656
ArsI	GACNNNNNNTTYG	4 cut(s)	35, 40, 67, 72
Asp700I	GAANNNNTTC	1 cut(s)	111
AspLEI	GCGC	1 cut(s)	228
AsuHPI	GGTGA	3 cut(s)	67, 352, 572
AvaI	CYCGRG	1 cut(s)	612
AxyI	CCTNAGG	1 cut(s)	816
BamHI	GGATCC	1 cut(s)	744
BanII	GRGCYC	1 cut(s)	619
BauI	CACGAG	1 cut(s)	770
Bbv12I	GWGCWC	1 cut(s)	619
BbvCI	CCTCAGC	1 cut(s)	750
BbvI	GCAGC	1 cut(s)	920
BccI	CCATC	4 cut(s)	305, 403, 585, 659
BceAI	ACGGC	1 cut(s)	123
BciT130I	CCWGG	1 cut(s)	147
BciVI	GTATCC	1 cut(s)	10
BcoDI	GTCTC	1 cut(s)	419
BfaI	CTAG	1 cut(s)	222
BfmI	CTRYAG	1 cut(s)	351
BfuAI	ACCTGC	1 cut(s)	945
BfuI	GTATCC	1 cut(s)	10
BisI	GCNGC	3 cut(s)	321, 755, 909
BlsI	GCNGC	3 cut(s)	322, 756, 910
Bme1390I	CCNGG	1 cut(s)	147
BmeT110I	CYCGRG	1 cut(s)	612
BmiI	GGNNCC	1 cut(s)	746
BmrFI	CCNGG	1 cut(s)	147
BmsI	GCATC	2 cut(s)	565, 766
Bpu10I	CCTNAGC	1 cut(s)	750
Bsa29I	ATCGAT	1 cut(s)	336
BsaWI	WCCGGW	1 cut(s)	280
Bse21I	CCTNAGG	1 cut(s)	816
Bse3DI	GCAATG	1 cut(s)	951
BseAI	TCCGGA	1 cut(s)	280
BseBI	CCWGG	1 cut(s)	147
BseCI	ATCGAT	1 cut(s)	336
BseGI	GGATG	4 cut(s)	289, 297, 481, 789
BseMI	GCAATG	1 cut(s)	951
BseMII	CTCAG	3 cut(s)	79, 90, 764
BseRI	GAGGAG	1 cut(s)	477
BseXI	GCAGC	1 cut(s)	920
Bsh1236I	CGCG	1 cut(s)	228
Bsh1285I	CGRYCG	1 cut(s)	46
BshFI	GGCC	1 cut(s)	138
BshVI	ATCGAT	1 cut(s)	336
BsiEI	CGRYCG	1 cut(s)	46
BsiHKAI	GWGCWC	1 cut(s)	619
BsiHKCI	CYCGRG	1 cut(s)	612
BsiSI	CCGG	1 cut(s)	281
BsmAI	GTCTC	1 cut(s)	419
BsnI	GGCC	1 cut(s)	138
BsoBI	CYCGRG	1 cut(s)	612
Bsp1286I	GDGCHC	1 cut(s)	619
Bsp13I	TCCGGA	1 cut(s)	280
Bsp143I	GATC	5 cut(s)	268, 277, 448, 556, 744
BspACI	CCGC	4 cut(s)	228, 289, 321, 755
BspANI	GGCC	1 cut(s)	138
BspCNI	CTCAG	3 cut(s)	78, 91, 763
BspDI	ATCGAT	1 cut(s)	336
BspEI	TCCGGA	1 cut(s)	280
BspFNI	CGCG	1 cut(s)	228
BspLI	GGNNCC	1 cut(s)	746
BspMI	ACCTGC	1 cut(s)	945
BspPI	GGATC	5 cut(s)	263, 272, 443, 739, 752
BspQI	GCTCTTC	1 cut(s)	698
BsrDI	GCAATG	1 cut(s)	951
BssMI	GATC	5 cut(s)	268, 277, 448, 556, 744
BssSI	CACGAG	1 cut(s)	770
Bst2BI	CACGAG	1 cut(s)	770
Bst2UI	CCWGG	1 cut(s)	147
Bst4CI	ACNGT	2 cut(s)	187, 888
Bst6I	CTCTTC	3 cut(s)	94, 417, 698
BstAPI	GCANNNNNTGC	1 cut(s)	763
BstC8I	GCNNGC	2 cut(s)	413, 942
BstDEI	CTNAG	4 cut(s)	65, 99, 750, 816
BstF5I	GGATG	4 cut(s)	289, 297, 481, 789
BstFNI	CGCG	1 cut(s)	228
BstHHI	GCGC	1 cut(s)	228
BstKTI	GATC	5 cut(s)	271, 280, 451, 559, 747
BstMAI	GTCTC	1 cut(s)	419
BstMBI	GATC	5 cut(s)	268, 277, 448, 556, 744
BstMCI	CGRYCG	1 cut(s)	46
BstMWI	GCNNNNNNNGC	3 cut(s)	623, 763, 772
BstNI	CCWGG	1 cut(s)	147
BstSCI	CCNGG	1 cut(s)	145
BstSFI	CTRYAG	1 cut(s)	351
BstUI	CGCG	1 cut(s)	228
BstV1I	GCAGC	1 cut(s)	920
BstX2I	RGATCY	1 cut(s)	744
BstYI	RGATCY	1 cut(s)	744
Bsu15I	ATCGAT	1 cut(s)	336
Bsu36I	CCTNAGG	1 cut(s)	816
BsuI	GTATCC	1 cut(s)	10
BsuRI	GGCC	1 cut(s)	138
BsuTUI	ATCGAT	1 cut(s)	336
BtsCI	GGATG	4 cut(s)	289, 297, 481, 789
BtsIMutI	CAGTG	1 cut(s)	273
BveI	ACCTGC	1 cut(s)	945
Cac8I	GCNNGC	2 cut(s)	413, 942
CfoI	GCGC	1 cut(s)	228
ClaI	ATCGAT	1 cut(s)	336
Csp6I	GTAC	1 cut(s)	28
CviAII	CATG	1 cut(s)	925
CviQI	GTAC	1 cut(s)	28
DdeI	CTNAG	4 cut(s)	65, 99, 750, 816
DpnI	GATC	5 cut(s)	270, 279, 450, 558, 746
DpnII	GATC	5 cut(s)	268, 277, 448, 556, 744
DraI	TTTAAA	1 cut(s)	603
EaeI	YGGCCR	1 cut(s)	136
Eam1104I	CTCTTC	3 cut(s)	94, 417, 698
EarI	CTCTTC	3 cut(s)	94, 417, 698
Ecl136II	GAGCTC	1 cut(s)	617
Eco24I	GRGCYC	1 cut(s)	619
Eco53kI	GAGCTC	1 cut(s)	617
Eco81I	CCTNAGG	1 cut(s)	816
Eco88I	CYCGRG	1 cut(s)	612
EcoICRI	GAGCTC	1 cut(s)	617
EcoRI	GAATTC	1 cut(s)	461
EcoRII	CCWGG	1 cut(s)	145
EcoT38I	GRGCYC	1 cut(s)	619
FaeI	CATG	1 cut(s)	928
FalI	AAGNNNNNCTT	4 cut(s)	73, 105, 692, 724
FatI	CATG	1 cut(s)	924
FauI	CCCGC	1 cut(s)	221
FauNDI	CATATG	1 cut(s)	931
Fnu4HI	GCNGC	3 cut(s)	321, 755, 909
FokI	GGATG	4 cut(s)	284, 296, 468, 796
FriOI	GRGCYC	1 cut(s)	619
Fsp4HI	GCNGC	3 cut(s)	321, 755, 909
FspBI	CTAG	1 cut(s)	222
GlaI	GCGC	1 cut(s)	227
GluI	GCNGC	3 cut(s)	321, 755, 909
HaeIII	GGCC	1 cut(s)	138
HapII	CCGG	1 cut(s)	281
HhaI	GCGC	1 cut(s)	228
Hin1II	CATG	1 cut(s)	928
Hin6I	GCGC	1 cut(s)	226
HinP1I	GCGC	1 cut(s)	226
HindIII	AAGCTT	1 cut(s)	536
HinfI	GANTC	2 cut(s)	194, 330
HpaII	CCGG	1 cut(s)	281
HphI	GGTGA	3 cut(s)	67, 352, 572
Hpy166II	GTNNAC	3 cut(s)	75, 360, 891
Hpy188I	TCNGA	2 cut(s)	68, 167
Hpy188III	TCNNGA	3 cut(s)	281, 458, 466
Hpy8I	GTNNAC	3 cut(s)	75, 360, 891
Hpy99I	CGWCG	2 cut(s)	144, 371
HpyAV	CCTTC	3 cut(s)	7, 733, 857
HpyCH4III	ACNGT	2 cut(s)	187, 888
HpyCH4IV	ACGT	3 cut(s)	20, 162, 567
HpyCH4V	TGCA	1 cut(s)	647
HpyF10VI	GCNNNNNNNGC	3 cut(s)	623, 763, 772
HpyF3I	CTNAG	4 cut(s)	65, 99, 750, 816
HpySE526I	ACGT	3 cut(s)	20, 162, 567
Hsp92II	CATG	1 cut(s)	928
HspAI	GCGC	1 cut(s)	226
Kpn2I	TCCGGA	1 cut(s)	280
Kzo9I	GATC	5 cut(s)	268, 277, 448, 556, 744
LguI	GCTCTTC	1 cut(s)	698
Lsp1109I	GCAGC	1 cut(s)	920
LweI	GCATC	2 cut(s)	565, 766
MaeI	CTAG	1 cut(s)	222
MaeII	ACGT	3 cut(s)	20, 162, 567
MaeIII	GTNAC	3 cut(s)	308, 530, 809
MalI	GATC	5 cut(s)	270, 279, 450, 558, 746
MboI	GATC	5 cut(s)	268, 277, 448, 556, 744
MboII	GAAGA	7 cut(s)	22, 81, 431, 434, 703, 712, 715
MfeI	CAATTG	1 cut(s)	648
MflI	RGATCY	1 cut(s)	744
MhlI	GDGCHC	1 cut(s)	619
MmeI	TCCRAC	1 cut(s)	907
MnlI	CCTC	8 cut(s)	374, 489, 495, 498, 511, 589, 621, 759
MroI	TCCGGA	1 cut(s)	280
MroXI	GAANNNNTTC	1 cut(s)	111
MseI	TTAA	4 cut(s)	602, 674, 777, 806
MspI	CCGG	1 cut(s)	281
MspR9I	CCNGG	1 cut(s)	147
MunI	CAATTG	1 cut(s)	648
MvaI	CCWGG	1 cut(s)	147
MvnI	CGCG	1 cut(s)	228
MwoI	GCNNNNNNNGC	3 cut(s)	623, 763, 772
NdeI	CATATG	1 cut(s)	931
NdeII	GATC	5 cut(s)	268, 277, 448, 556, 744
NlaIII	CATG	1 cut(s)	928
NlaIV	GGNNCC	1 cut(s)	746
NmuCI	GTSAC	2 cut(s)	308, 530
PaeR7I	CTCGAG	1 cut(s)	612
PciSI	GCTCTTC	1 cut(s)	698
PdmI	GAANNNNTTC	1 cut(s)	111
PfeI	GAWTC	2 cut(s)	194, 330
PkrI	GCNGC	3 cut(s)	322, 756, 910
PsiI	TTATAA	1 cut(s)	726
Psp124BI	GAGCTC	1 cut(s)	619
Psp6I	CCWGG	1 cut(s)	145
PspGI	CCWGG	1 cut(s)	145
PspN4I	GGNNCC	1 cut(s)	746
PspXI	VCTCGAGB	1 cut(s)	612
PsuI	RGATCY	1 cut(s)	744
RsaI	GTAC	1 cut(s)	29
RsaNI	GTAC	1 cut(s)	28
SacI	GAGCTC	1 cut(s)	619
SapI	GCTCTTC	1 cut(s)	698
SaqAI	TTAA	4 cut(s)	602, 674, 777, 806
SatI	GCNGC	3 cut(s)	321, 755, 909
Sau3AI	GATC	5 cut(s)	268, 277, 448, 556, 744
ScrFI	CCNGG	1 cut(s)	147
SduI	GDGCHC	1 cut(s)	619
SfaNI	GCATC	2 cut(s)	565, 766
SfcI	CTRYAG	1 cut(s)	351
Sfr274I	CTCGAG	1 cut(s)	612
SlaI	CTCGAG	1 cut(s)	612
SmlI	CTYRAG	1 cut(s)	612
SmoI	CTYRAG	1 cut(s)	612
SsiI	CCGC	4 cut(s)	228, 289, 321, 755
SspMI	CTAG	1 cut(s)	222
SstI	GAGCTC	1 cut(s)	619
StyD4I	CCNGG	1 cut(s)	145
TaaI	ACNGT	2 cut(s)	187, 888
TaiI	ACGT	3 cut(s)	23, 165, 570
TaqI	TCGA	7 cut(s)	5, 336, 366, 573, 613, 732, 916
TaqII	GACCGA	1 cut(s)	60
TatI	WGTACW	1 cut(s)	27
TauI	GCSGC	2 cut(s)	323, 757
TfiI	GAWTC	2 cut(s)	194, 330
Tru1I	TTAA	4 cut(s)	602, 674, 777, 806
Tru9I	TTAA	4 cut(s)	602, 674, 777, 806
TscAI	CASTG	1 cut(s)	280
TseFI	GTSAC	2 cut(s)	308, 530
TseI	GCWGC	1 cut(s)	908
Tsp45I	GTSAC	2 cut(s)	308, 530
TspDTI	ATGAA	5 cut(s)	23, 53, 322, 393, 962
TspGWI	ACGGA	1 cut(s)	290
TspRI	CASTG	1 cut(s)	280
XapI	RAATTY	4 cut(s)	48, 154, 461, 656
XhoI	CTCGAG	1 cut(s)	612
XmnI	GAANNNNTTC	1 cut(s)	111
XspI	CTAG	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.