Rroxscaffold_2G00088990

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000563
Physical Location & Seq
Forward (+)
10887067 .. 10888007
941 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00088990.1

Sequence Viewer

Length: 495 bp
ATGAAACATCTAATTGTTGGTTCCGACGTTTATACGATTGGTGCGCTGGTATTTATAATCATCCTACTTTGTTCGGACCTCCCAACTTGGATGTATATTCCTTTGATCTCACCGACCCAAATGGTCCATCCATTCAACTTTGCCAGGTTGAATTCAAATGAGATTATTGACCCTGAGGCGTATCAGGTGCTGCATGAGCTTAATGATGAGATACTTCTATGTAATAATTTAGAAGTGCGAGATGACGACATTTTCTTGGGTATATGTGATGGTGGTCATTTGTGGCTGGTGTGTCCTAGTCATTATGGTACAAATGTGATGGTACTTCAAATTTCCATCTCAAACGATCTTGATGATATCCCGGTCCTCTCTACATATATTGAGGCTCAAGAGCTTTTCGATTTTCATCATTACAGTAGTTGTTCGTCGGCAAGTATTCAAGTTTTACGAATTCATGCAAGGAGCACAAATGAAAACCCAAGCATTTTCCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

164

Amino Acids

18.59

Weight (kDa)

4.57

Isoelectric Point (pI)

43.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 56
AcsI RAATTY 3 cut(s) 151, 330, 450
AfaI GTAC 2 cut(s) 310, 324
AgsI TTSAA 5 cut(s) 136, 151, 156, 329, 440
AjnI CCWGG 1 cut(s) 143
AluBI AGCT 2 cut(s) 199, 394
AluI AGCT 2 cut(s) 199, 394
Alw21I GWGCWC 1 cut(s) 467
AlwNI CAGNNNCTG 1 cut(s) 190
ApeKI GCWGC 1 cut(s) 190
ApoI RAATTY 3 cut(s) 151, 330, 450
AspLEI GCGC 1 cut(s) 46
AspS9I GGNCC 3 cut(s) 76, 124, 364
AsuC2I CCSGG 1 cut(s) 362
AsuHPI GGTGA 1 cut(s) 102
AvaII GGWCC 3 cut(s) 76, 124, 364
AxyI CCTNAGG 1 cut(s) 174
BaeI ACNNNNGTAYC 2 cut(s) 300, 333
Bbv12I GWGCWC 1 cut(s) 467
BbvI GCAGC 1 cut(s) 177
BccI CCATC 4 cut(s) 135, 263, 313, 344
BciT130I CCWGG 1 cut(s) 145
BcnI CCSGG 1 cut(s) 362
BfaI CTAG 1 cut(s) 297
BisI GCNGC 1 cut(s) 191
BlsI GCNGC 1 cut(s) 192
Bme1390I CCNGG 2 cut(s) 145, 362
Bme18I GGWCC 3 cut(s) 76, 124, 364
BmgT120I GGNCC 3 cut(s) 76, 124, 364
BmiI GGNNCC 1 cut(s) 22
BmrFI CCNGG 2 cut(s) 145, 362
BpuEI CTTGAG 1 cut(s) 372
BpuMI CCSGG 1 cut(s) 362
BsaBI GATNNNNATC 1 cut(s) 405
Bse21I CCTNAGG 1 cut(s) 174
Bse8I GATNNNNATC 1 cut(s) 405
BseBI CCWGG 1 cut(s) 145
BseGI GGATG 3 cut(s) 60, 96, 127
BseJI GATNNNNATC 1 cut(s) 405
BseMII CTCAG 1 cut(s) 165
BseXI GCAGC 1 cut(s) 177
BsiHKAI GWGCWC 1 cut(s) 467
BsiSI CCGG 1 cut(s) 362
Bsp1286I GDGCHC 1 cut(s) 467
Bsp143I GATC 2 cut(s) 105, 346
BspCNI CTCAG 1 cut(s) 166
BspLI GGNNCC 1 cut(s) 22
BssMI GATC 2 cut(s) 105, 346
Bst2UI CCWGG 1 cut(s) 145
Bst4CI ACNGT 1 cut(s) 416
BstDEI CTNAG 1 cut(s) 174
BstF5I GGATG 3 cut(s) 60, 96, 127
BstHHI GCGC 1 cut(s) 46
BstKTI GATC 2 cut(s) 108, 349
BstMBI GATC 2 cut(s) 105, 346
BstMWI GCNNNNNNNGC 1 cut(s) 196
BstNI CCWGG 1 cut(s) 145
BstSCI CCNGG 2 cut(s) 143, 360
BstV1I GCAGC 1 cut(s) 177
Bsu36I CCTNAGG 1 cut(s) 174
BtsCI GGATG 3 cut(s) 60, 96, 127
BtsIMutI CAGTG 1 cut(s) 490
CaiI CAGNNNCTG 1 cut(s) 190
CfoI GCGC 1 cut(s) 46
Cfr13I GGNCC 3 cut(s) 76, 124, 364
Csp6I GTAC 2 cut(s) 309, 323
CviAII CATG 2 cut(s) 194, 455
CviJI RGCY 4 cut(s) 199, 286, 386, 394
CviKI_1 RGCY 4 cut(s) 199, 286, 386, 394
CviQI GTAC 2 cut(s) 309, 323
DdeI CTNAG 1 cut(s) 174
DpnI GATC 2 cut(s) 107, 348
DpnII GATC 2 cut(s) 105, 346
Eco32I GATATC 1 cut(s) 358
Eco47I GGWCC 3 cut(s) 76, 124, 364
Eco81I CCTNAGG 1 cut(s) 174
EcoRI GAATTC 2 cut(s) 151, 450
EcoRII CCWGG 1 cut(s) 143
EcoRV GATATC 1 cut(s) 358
FaeI CATG 2 cut(s) 197, 458
FatI CATG 2 cut(s) 193, 454
Fnu4HI GCNGC 1 cut(s) 191
FokI GGATG 3 cut(s) 47, 103, 114
Fsp4HI GCNGC 1 cut(s) 191
FspBI CTAG 1 cut(s) 297
GlaI GCGC 1 cut(s) 45
GluI GCNGC 1 cut(s) 191
HapII CCGG 1 cut(s) 362
HhaI GCGC 1 cut(s) 46
Hin1II CATG 2 cut(s) 197, 458
Hin6I GCGC 1 cut(s) 44
HinP1I GCGC 1 cut(s) 44
HpaII CCGG 1 cut(s) 362
HphI GGTGA 1 cut(s) 102
Hpy188I TCNGA 2 cut(s) 25, 76
Hpy188III TCNNGA 2 cut(s) 350, 389
Hpy99I CGWCG 2 cut(s) 29, 430
HpyCH4III ACNGT 1 cut(s) 416
HpyCH4IV ACGT 1 cut(s) 27
HpyCH4V TGCA 2 cut(s) 193, 458
HpyF10VI GCNNNNNNNGC 1 cut(s) 196
HpyF3I CTNAG 1 cut(s) 174
HpySE526I ACGT 1 cut(s) 27
Hsp92II CATG 2 cut(s) 197, 458
HspAI GCGC 1 cut(s) 44
Kzo9I GATC 2 cut(s) 105, 346
LmnI GCTCC 1 cut(s) 462
LpnPI CCDG 7 cut(s) 32, 130, 157, 170, 186, 272, 375
Lsp1109I GCAGC 1 cut(s) 177
MaeI CTAG 1 cut(s) 297
MaeII ACGT 1 cut(s) 27
MalI GATC 2 cut(s) 107, 348
MboI GATC 2 cut(s) 105, 346
MhlI GDGCHC 1 cut(s) 467
MluCI AATT 5 cut(s) 12, 151, 226, 330, 450
MmeI TCCRAC 1 cut(s) 48
MnlI CCTC 4 cut(s) 89, 169, 376, 377
MseI TTAA 1 cut(s) 201
MspI CCGG 1 cut(s) 362
MspR9I CCNGG 2 cut(s) 145, 362
MvaI CCWGG 1 cut(s) 145
MwoI GCNNNNNNNGC 1 cut(s) 196
NciI CCSGG 1 cut(s) 362
NdeII GATC 2 cut(s) 105, 346
NlaIII CATG 2 cut(s) 197, 458
NlaIV GGNNCC 1 cut(s) 22
PkrI GCNGC 1 cut(s) 192
PsiI TTATAA 1 cut(s) 56
Psp6I CCWGG 1 cut(s) 143
PspGI CCWGG 1 cut(s) 143
PspN4I GGNNCC 1 cut(s) 22
PspPI GGNCC 3 cut(s) 76, 124, 364
PstNI CAGNNNCTG 1 cut(s) 190
RsaI GTAC 2 cut(s) 310, 324
RsaNI GTAC 2 cut(s) 309, 323
SaqAI TTAA 1 cut(s) 201
SatI GCNGC 1 cut(s) 191
Sau3AI GATC 2 cut(s) 105, 346
Sau96I GGNCC 3 cut(s) 76, 124, 364
ScrFI CCNGG 2 cut(s) 145, 362
SduI GDGCHC 1 cut(s) 467
SetI ASST 6 cut(s) 30, 81, 149, 189, 201, 396
SinI GGWCC 3 cut(s) 76, 124, 364
SmlI CTYRAG 1 cut(s) 387
SmoI CTYRAG 1 cut(s) 387
Sse9I AATT 5 cut(s) 12, 151, 226, 330, 450
SspMI CTAG 1 cut(s) 297
StyD4I CCNGG 2 cut(s) 143, 360
TaaI ACNGT 1 cut(s) 416
TaiI ACGT 1 cut(s) 30
TaqI TCGA 1 cut(s) 399
TasI AATT 5 cut(s) 12, 151, 226, 330, 450
Tru1I TTAA 1 cut(s) 201
Tru9I TTAA 1 cut(s) 201
TseI GCWGC 1 cut(s) 190
TspDTI ATGAA 4 cut(s) 17, 395, 443, 486
VpaK11BI GGWCC 3 cut(s) 76, 124, 364
XapI RAATTY 3 cut(s) 151, 330, 450
XspI CTAG 1 cut(s) 297
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.