FvH4_3g42210

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000563
Physical Location & Seq
Reverse (-)
35251193 .. 35253422
2230 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g42210.t1

Sequence Viewer

Length: 762 bp
ATGACAATGCAGTGGTCGGAGATATGCGACCGATTCTGTGGCCGGAGTATCAGCAAATACCTGTCTTCTTGTTTCTCTCCCGATGAGACAGACACACCGGCGCCGCCAAAGAAGGATAATTGGTTTTTGTACTTGACGACGCCCCAACTTATATGTCGTCTAAACATTGATGAGTTCTGCAAAACAAGCTCTGAGTCGACGCCTTTGCAATTTGAATGCTTGTATGAAGTCAATCATAACTATCGTCGTGGTGACGACGACGAAGACGGTTGTGAGGGGGATCATCATCCATGTGGAATTTCCTTATACGGAACACACACACTTGTGGGTTCCAAACTGTACATCTCGGTCATCTCCTATGATCGGTGTTCCGGTTATCCAGTGACTTATTGCTTTGATCCAACTGATCCGGAGGGTCCATCTGTTCGCCGATGCGATGAGGGTTCCATTCCCGAGGTTGTGAGTTACACAGGCAACAATAGAGTACTCTATGTTCCAGTAAACGTTGATGCTGATTATGCTTCTATCGAATTCAACGGCTTTCTAATTGGCTTACCTCGCGATCGTTTTGGAACAAGGCTTCTTGCTTATCGGTGGGATTCGAATGGAGTCCGAAGGCTGTATCGTGCCGCAGAGTTCTTTCAGTTCCATTGGGGCTTTGTAGATTGTATCAGCTCAGCTTTCGCCTTGTGCCATCAGCCAAACGGTGATGAGGACAACAAGAACTTGTGCGGGACGATTATTGGTCATGCCCGATGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

254

Amino Acids

28.76

Weight (kDa)

4.96

Isoelectric Point (pI)

40.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 100
AccI GTMKAC 1 cut(s) 197
AccII CGCG 1 cut(s) 561
AccIII TCCGGA 1 cut(s) 409
AciI CCGC 3 cut(s) 104, 630, 732
AclI AACGTT 1 cut(s) 504
AclWI GGATC 3 cut(s) 288, 392, 401
AcoI YGGCCR 1 cut(s) 40
AcsI RAATTY 2 cut(s) 297, 530
AcyI GRCGYC 3 cut(s) 101, 140, 200
AfaI GTAC 3 cut(s) 131, 341, 486
AfiI CCNNNNNNNGG 1 cut(s) 363
AgsI TTSAA 2 cut(s) 215, 535
AleI CACNNNNGTG 1 cut(s) 323
AluBI AGCT 3 cut(s) 189, 675, 680
AluI AGCT 3 cut(s) 189, 675, 680
Alw26I GTCTC 1 cut(s) 80
AlwI GGATC 3 cut(s) 288, 392, 401
Ama87I CYCGRG 1 cut(s) 452
Aor13HI TCCGGA 1 cut(s) 409
AoxI GGCC 1 cut(s) 40
ApoI RAATTY 2 cut(s) 297, 530
AspLEI GCGC 1 cut(s) 103
AspS9I GGNCC 1 cut(s) 416
AsuHPI GGTGA 2 cut(s) 263, 719
AsuII TTCGAA 1 cut(s) 602
AvaI CYCGRG 1 cut(s) 452
AvaII GGWCC 1 cut(s) 416
BanI GGYRCC 1 cut(s) 100
BbsI GAAGAC 2 cut(s) 57, 270
BccI CCATC 2 cut(s) 427, 702
BceAI ACGGC 1 cut(s) 553
BcgI CGANNNNNNTGC 2 cut(s) 187, 221
BcoDI GTCTC 1 cut(s) 80
BfoI RGCGCY 1 cut(s) 104
BisI GCNGC 2 cut(s) 104, 630
BlpI GCTNAGC 1 cut(s) 676
BlsI GCNGC 2 cut(s) 105, 631
BmcAI AGTACT 1 cut(s) 486
Bme18I GGWCC 1 cut(s) 416
BmeT110I CYCGRG 1 cut(s) 452
BmgT120I GGNCC 1 cut(s) 416
BmiI GGNNCC 4 cut(s) 102, 331, 417, 445
BmsI GCATC 3 cut(s) 422, 499, 746
BpiI GAAGAC 2 cut(s) 57, 270
Bpu1102I GCTNAGC 1 cut(s) 676
Bpu14I TTCGAA 1 cut(s) 602
BsaBI GATNNNNATC 1 cut(s) 285
BsaHI GRCGYC 3 cut(s) 101, 140, 200
BsaJI CCNNGG 1 cut(s) 453
BsaWI WCCGGW 2 cut(s) 371, 409
Bsc4I CCNNNNNNNGG 1 cut(s) 363
Bse118I RCCGGY 1 cut(s) 97
Bse1I ACTGG 2 cut(s) 380, 497
Bse8I GATNNNNATC 1 cut(s) 285
BseAI TCCGGA 1 cut(s) 409
BseDI CCNNGG 1 cut(s) 453
BseGI GGATG 1 cut(s) 286
BseJI GATNNNNATC 1 cut(s) 285
BseLI CCNNNNNNNGG 1 cut(s) 363
BseMII CTCAG 2 cut(s) 183, 690
BseNI ACTGG 2 cut(s) 380, 497
Bsh1236I CGCG 1 cut(s) 561
Bsh1285I CGRYCG 2 cut(s) 31, 565
BshFI GGCC 1 cut(s) 42
BshNI GGYRCC 1 cut(s) 100
BsiEI CGRYCG 2 cut(s) 31, 565
BsiHKCI CYCGRG 1 cut(s) 452
BsiSI CCGG 4 cut(s) 43, 98, 372, 410
BslFI GGGAC 1 cut(s) 748
BslI CCNNNNNNNGG 1 cut(s) 363
BsmAI GTCTC 1 cut(s) 80
BsmFI GGGAC 1 cut(s) 748
BsmI GAATGC 1 cut(s) 221
BsnI GGCC 1 cut(s) 42
BsoBI CYCGRG 1 cut(s) 452
Bsp119I TTCGAA 1 cut(s) 602
Bsp13I TCCGGA 1 cut(s) 409
Bsp1407I TGTACA 1 cut(s) 339
Bsp143I GATC 5 cut(s) 280, 361, 397, 406, 562
Bsp1720I GCTNAGC 1 cut(s) 676
Bsp68I TCGCGA 1 cut(s) 561
BspACI CCGC 3 cut(s) 104, 630, 732
BspANI GGCC 1 cut(s) 42
BspCNI CTCAG 2 cut(s) 184, 689
BspEI TCCGGA 1 cut(s) 409
BspFNI CGCG 1 cut(s) 561
BspLI GGNNCC 4 cut(s) 102, 331, 417, 445
BspPI GGATC 3 cut(s) 288, 392, 401
BspT104I TTCGAA 1 cut(s) 602
BspT107I GGYRCC 1 cut(s) 100
BsrFI RCCGGY 1 cut(s) 97
BsrGI TGTACA 1 cut(s) 339
BsrI ACTGG 2 cut(s) 380, 497
BssAI RCCGGY 1 cut(s) 97
BssECI CCNNGG 1 cut(s) 453
BssMI GATC 5 cut(s) 280, 361, 397, 406, 562
BssNI GRCGYC 3 cut(s) 101, 140, 200
Bst4CI ACNGT 3 cut(s) 269, 339, 707
BstACI GRCGYC 3 cut(s) 101, 140, 200
BstAUI TGTACA 1 cut(s) 339
BstBI TTCGAA 1 cut(s) 602
BstDEI CTNAG 2 cut(s) 192, 676
BstF5I GGATG 1 cut(s) 286
BstFNI CGCG 1 cut(s) 561
BstH2I RGCGCY 1 cut(s) 104
BstHHI GCGC 1 cut(s) 103
BstKTI GATC 5 cut(s) 283, 364, 400, 409, 565
BstMAI GTCTC 1 cut(s) 80
BstMBI GATC 5 cut(s) 280, 361, 397, 406, 562
BstMCI CGRYCG 2 cut(s) 31, 565
BstMWI GCNNNNNNNGC 3 cut(s) 186, 518, 558
BstUI CGCG 1 cut(s) 561
BstV2I GAAGAC 2 cut(s) 57, 270
BsuRI GGCC 1 cut(s) 42
BtgZI GCGATG 1 cut(s) 450
BtsCI GGATG 1 cut(s) 286
BtsI GCAGTG 1 cut(s) 17
BtsIMutI CAGTG 2 cut(s) 17, 387
BtuMI TCGCGA 1 cut(s) 561
CfoI GCGC 1 cut(s) 103
Cfr10I RCCGGY 1 cut(s) 97
Cfr13I GGNCC 1 cut(s) 416
CseI GACGC 2 cut(s) 148, 208
Csp6I GTAC 3 cut(s) 130, 340, 485
CviAII CATG 2 cut(s) 291, 749
CviQI GTAC 3 cut(s) 130, 340, 485
DdeI CTNAG 2 cut(s) 192, 676
DinI GGCGCC 1 cut(s) 102
DpnI GATC 5 cut(s) 282, 363, 399, 408, 564
DpnII GATC 5 cut(s) 280, 361, 397, 406, 562
EaeI YGGCCR 1 cut(s) 40
Eco47I GGWCC 1 cut(s) 416
Eco88I CYCGRG 1 cut(s) 452
EcoRI GAATTC 1 cut(s) 530
EgeI GGCGCC 1 cut(s) 102
EheI GGCGCC 1 cut(s) 102
FaeI CATG 2 cut(s) 294, 752
FaqI GGGAC 1 cut(s) 748
FatI CATG 2 cut(s) 290, 748
FauI CCCGC 1 cut(s) 725
FblI GTMKAC 1 cut(s) 197
Fnu4HI GCNGC 2 cut(s) 104, 630
FokI GGATG 1 cut(s) 273
Fsp4HI GCNGC 2 cut(s) 104, 630
GlaI GCGC 1 cut(s) 102
GluI GCNGC 2 cut(s) 104, 630
HaeII RGCGCY 1 cut(s) 104
HaeIII GGCC 1 cut(s) 42
HapII CCGG 4 cut(s) 43, 98, 372, 410
HgaI GACGC 2 cut(s) 148, 208
HhaI GCGC 1 cut(s) 103
Hin1I GRCGYC 3 cut(s) 101, 140, 200
Hin1II CATG 2 cut(s) 294, 752
Hin6I GCGC 1 cut(s) 101
HinP1I GCGC 1 cut(s) 101
HincII GTYRAC 1 cut(s) 198
HindII GTYRAC 1 cut(s) 198
HinfI GANTC 4 cut(s) 33, 194, 599, 609
HpaII CCGG 4 cut(s) 43, 98, 372, 410
HphI GGTGA 2 cut(s) 263, 719
Hpy166II GTNNAC 2 cut(s) 198, 502
Hpy188I TCNGA 3 cut(s) 19, 193, 614
Hpy188III TCNNGA 4 cut(s) 80, 410, 452, 560
Hpy8I GTNNAC 2 cut(s) 198, 502
Hpy99I CGWCG 5 cut(s) 142, 202, 249, 260, 263
HpyAV CCTTC 2 cut(s) 106, 609
HpyCH4III ACNGT 3 cut(s) 269, 339, 707
HpyCH4IV ACGT 1 cut(s) 504
HpyCH4V TGCA 3 cut(s) 10, 180, 208
HpyF10VI GCNNNNNNNGC 3 cut(s) 186, 518, 558
HpyF3I CTNAG 2 cut(s) 192, 676
HpySE526I ACGT 1 cut(s) 504
Hsp92I GRCGYC 3 cut(s) 101, 140, 200
Hsp92II CATG 2 cut(s) 294, 752
HspAI GCGC 1 cut(s) 101
KasI GGCGCC 1 cut(s) 100
Kpn2I TCCGGA 1 cut(s) 409
Kzo9I GATC 5 cut(s) 280, 361, 397, 406, 562
LpnPI CCDG 8 cut(s) 56, 74, 111, 385, 393, 423, 456, 510
LweI GCATC 3 cut(s) 422, 499, 746
MaeII ACGT 1 cut(s) 504
MaeIII GTNAC 3 cut(s) 251, 382, 464
MalI GATC 5 cut(s) 282, 363, 399, 408, 564
MboI GATC 5 cut(s) 280, 361, 397, 406, 562
MboII GAAGA 2 cut(s) 57, 275
MluCI AATT 5 cut(s) 118, 209, 297, 530, 546
Mly113I GGCGCC 1 cut(s) 101
MlyI GAGTC 2 cut(s) 203, 618
MmeI TCCRAC 1 cut(s) 425
MnlI CCTC 6 cut(s) 268, 406, 433, 448, 567, 706
MroI TCCGGA 1 cut(s) 409
MslI CAYNNNNRTG 2 cut(s) 291, 323
MspI CCGG 4 cut(s) 43, 98, 372, 410
Mva1269I GAATGC 1 cut(s) 221
MvnI CGCG 1 cut(s) 561
MwoI GCNNNNNNNGC 3 cut(s) 186, 518, 558
NarI GGCGCC 1 cut(s) 101
NdeII GATC 5 cut(s) 280, 361, 397, 406, 562
NlaIII CATG 2 cut(s) 294, 752
NlaIV GGNNCC 4 cut(s) 102, 331, 417, 445
NmuCI GTSAC 2 cut(s) 251, 382
NruI TCGCGA 1 cut(s) 561
NspV TTCGAA 1 cut(s) 602
OliI CACNNNNGTG 1 cut(s) 323
PctI GAATGC 1 cut(s) 221
PfeI GAWTC 2 cut(s) 33, 599
PkrI GCNGC 2 cut(s) 105, 631
Ple19I CGATCG 1 cut(s) 565
PleI GAGTC 2 cut(s) 202, 617
PluTI GGCGCC 1 cut(s) 104
PpsI GAGTC 2 cut(s) 202, 617
Psp1406I AACGTT 1 cut(s) 504
PspN4I GGNNCC 4 cut(s) 102, 331, 417, 445
PspPI GGNCC 1 cut(s) 416
PsrI GAACNNNNNNTAC 2 cut(s) 477, 509
PvuI CGATCG 1 cut(s) 565
RruI TCGCGA 1 cut(s) 561
RsaI GTAC 3 cut(s) 131, 341, 486
RsaNI GTAC 3 cut(s) 130, 340, 485
RseI CAYNNNNRTG 2 cut(s) 291, 323
SalI GTCGAC 1 cut(s) 196
SatI GCNGC 2 cut(s) 104, 630
Sau3AI GATC 5 cut(s) 280, 361, 397, 406, 562
Sau96I GGNCC 1 cut(s) 416
ScaI AGTACT 1 cut(s) 486
SchI GAGTC 2 cut(s) 203, 618
SetI ASST 7 cut(s) 63, 191, 459, 507, 559, 677, 682
SfaNI GCATC 3 cut(s) 422, 499, 746
SfoI GGCGCC 1 cut(s) 102
SfuI TTCGAA 1 cut(s) 602
SgrAI CRCCGGYG 1 cut(s) 97
SinI GGWCC 1 cut(s) 416
SmiMI CAYNNNNRTG 2 cut(s) 291, 323
Sse9I AATT 5 cut(s) 118, 209, 297, 530, 546
SsiI CCGC 3 cut(s) 104, 630, 732
SspDI GGCGCC 1 cut(s) 100
TaaI ACNGT 3 cut(s) 269, 339, 707
TaiI ACGT 1 cut(s) 507
TaqI TCGA 3 cut(s) 197, 528, 602
TaqII GACCGA 2 cut(s) 45, 337
TasI AATT 5 cut(s) 118, 209, 297, 530, 546
TatI WGTACW 3 cut(s) 129, 339, 484
TauI GCSGC 2 cut(s) 106, 632
TfiI GAWTC 2 cut(s) 33, 599
TscAI CASTG 2 cut(s) 17, 387
TseFI GTSAC 2 cut(s) 251, 382
Tsp45I GTSAC 2 cut(s) 251, 382
TspDTI ATGAA 1 cut(s) 240
TspGWI ACGGA 1 cut(s) 324
TspRI CASTG 2 cut(s) 17, 387
VpaK11BI GGWCC 1 cut(s) 416
XapI RAATTY 2 cut(s) 297, 530
XmiI GTMKAC 1 cut(s) 197
ZrmI AGTACT 1 cut(s) 486
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.