Ribulose-1,5 bisphosphate carboxylase oxygenase large subunit N-methyltransferase
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| LRR_14 | PF23598 | 83 - 181 | 3.1e-07 | Leucine-rich repeat region |
| LRR_8 | PF13855 | 137 - 188 | 9.9e-08 | Leucine rich repeat |
| LRR_14 | PF23598 | 279 - 366 | 1.1e-06 | Leucine-rich repeat region |
| LRR_8 | PF13855 | 309 - 368 | 1.6e-06 | Leucine rich repeat |
| LRR_8 | PF13855 | 565 - 623 | 8.2e-06 | Leucine rich repeat |
| LRR_14 | PF23598 | 565 - 695 | 2.4e-06 | Leucine-rich repeat region |
| LRR_8 | PF13855 | 637 - 695 | 1.1e-09 | Leucine rich repeat |
| Pkinase | PF00069 | 774 - 1041 | 4e-39 | Protein kinase domain |
| PK_Tyr_Ser-Thr | PF07714 | 776 - 1041 | 1.2e-35 | Protein tyrosine and serine/threonine kinase |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 2181 |
| AatII | GACGTC | 1 cut(s) | 3002 |
| Acc36I | ACCTGC | 1 cut(s) | 2181 |
| AccB1I | GGYRCC | 1 cut(s) | 281 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 370, 840, 2105 |
| AccBSI | CCGCTC | 1 cut(s) | 1297 |
| AccI | GTMKAC | 3 cut(s) | 48, 379, 615 |
| AciI | CCGC | 5 cut(s) | 238, 293, 507, 611, 1297 |
| AclWI | GGATC | 2 cut(s) | 675, 1576 |
| AcoI | YGGCCR | 2 cut(s) | 1397, 2391 |
| AcyI | GRCGYC | 1 cut(s) | 2999 |
| AdeI | CACNNNGTG | 1 cut(s) | 840 |
| AfaI | GTAC | 7 cut(s) | 90, 479, 967, 2412, 2464, 2532, 2573 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 214, 370, 840, 1234, 1752, 1774, 1870, 2105, 2838 |
| AflII | CTTAAG | 1 cut(s) | 605 |
| AflIII | ACRYGT | 4 cut(s) | 1062, 1488, 2728, 2904 |
| AhlI | ACTAGT | 1 cut(s) | 1091 |
| AjnI | CCWGG | 2 cut(s) | 1233, 2818 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2079, 2111 |
| Alw26I | GTCTC | 4 cut(s) | 109, 1902, 2037, 2784 |
| AlwI | GGATC | 2 cut(s) | 675, 1576 |
| AoxI | GGCC | 8 cut(s) | 710, 1036, 1129, 1225, 1397, 2180, 2391, 3235 |
| ApeKI | GCWGC | 4 cut(s) | 509, 1527, 1688, 2231 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 642, 2278, 2827 |
| AspA2I | CCTAGG | 1 cut(s) | 1618 |
| AspS9I | GGNCC | 7 cut(s) | 186, 256, 353, 447, 710, 821, 1713 |
| AsuC2I | CCSGG | 1 cut(s) | 209 |
| AsuII | TTCGAA | 1 cut(s) | 636 |
| AsuNHI | GCTAGC | 1 cut(s) | 65 |
| AvaII | GGWCC | 6 cut(s) | 186, 256, 353, 447, 821, 1713 |
| AvrII | CCTAGG | 1 cut(s) | 1618 |
| BalI | TGGCCA | 1 cut(s) | 2393 |
| BanI | GGYRCC | 1 cut(s) | 281 |
| BarI | GAAGNNNNNNTAC | 6 cut(s) | 975, 1007, 1338, 1370, 2555, 2587 |
| BbsI | GAAGAC | 3 cut(s) | 721, 1048, 1597 |
| BbvI | GCAGC | 4 cut(s) | 496, 1539, 1700, 2218 |
| BceAI | ACGGC | 1 cut(s) | 1384 |
| BciT130I | CCWGG | 2 cut(s) | 1235, 2820 |
| BciVI | GTATCC | 1 cut(s) | 2606 |
| BclI | TGATCA | 1 cut(s) | 115 |
| BcnI | CCSGG | 1 cut(s) | 209 |
| BcoDI | GTCTC | 4 cut(s) | 109, 1902, 2037, 2784 |
| BcuI | ACTAGT | 1 cut(s) | 1091 |
| BfmI | CTRYAG | 6 cut(s) | 75, 720, 2174, 2600, 3162, 3220 |
| BfrI | CTTAAG | 1 cut(s) | 605 |
| BfuAI | ACCTGC | 1 cut(s) | 2181 |
| BfuI | GTATCC | 1 cut(s) | 2606 |
| BglII | AGATCT | 1 cut(s) | 544 |
| BisI | GCNGC | 5 cut(s) | 510, 1298, 1528, 1689, 2232 |
| BlnI | CCTAGG | 1 cut(s) | 1618 |
| BlpI | GCTNAGC | 1 cut(s) | 1366 |
| BlsI | GCNGC | 5 cut(s) | 511, 1299, 1529, 1690, 2233 |
| BmcAI | AGTACT | 1 cut(s) | 2464 |
| Bme1390I | CCNGG | 3 cut(s) | 209, 1235, 2820 |
| Bme18I | GGWCC | 6 cut(s) | 186, 256, 353, 447, 821, 1713 |
| BmgT120I | GGNCC | 7 cut(s) | 186, 256, 353, 447, 710, 821, 1713 |
| BmiI | GGNNCC | 7 cut(s) | 283, 355, 448, 499, 1714, 2555, 2817 |
| BmrFI | CCNGG | 3 cut(s) | 209, 1235, 2820 |
| BmrI | ACTGGG | 1 cut(s) | 2349 |
| BmsI | GCATC | 5 cut(s) | 156, 781, 1172, 2950, 3103 |
| BmtI | GCTAGC | 1 cut(s) | 69 |
| BmuI | ACTGGG | 1 cut(s) | 2349 |
| BoxI | GACNNNNGTC | 1 cut(s) | 2122 |
| BpiI | GAAGAC | 3 cut(s) | 721, 1048, 1597 |
| BpmI | CTGGAG | 2 cut(s) | 1326, 2802 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2794 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1366 |
| Bpu14I | TTCGAA | 1 cut(s) | 636 |
| BpuEI | CTTGAG | 3 cut(s) | 1313, 1543, 2579 |
| BpuMI | CCSGG | 1 cut(s) | 209 |
| BsaHI | GRCGYC | 1 cut(s) | 2999 |
| BsaI | GGTCTC | 1 cut(s) | 1902 |
| BsaJI | CCNNGG | 7 cut(s) | 349, 468, 1132, 1234, 1618, 2086, 3066 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 214, 370, 840, 1234, 1752, 1774, 1870, 2105, 2838 |
| Bse1I | ACTGG | 5 cut(s) | 153, 188, 895, 1228, 2344 |
| Bse3DI | GCAATG | 5 cut(s) | 106, 851, 2745, 2939, 2948 |
| BseBI | CCWGG | 2 cut(s) | 1235, 2820 |
| BseDI | CCNNGG | 7 cut(s) | 349, 468, 1132, 1234, 1618, 2086, 3066 |
| BseGI | GGATG | 6 cut(s) | 830, 1046, 1784, 2848, 2965, 3105 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 214, 370, 840, 1234, 1752, 1774, 1870, 2105, 2838 |
| BseMI | GCAATG | 5 cut(s) | 106, 851, 2745, 2939, 2948 |
| BseMII | CTCAG | 4 cut(s) | 1119, 1192, 2068, 2582 |
| BseNI | ACTGG | 5 cut(s) | 153, 188, 895, 1228, 2344 |
| BseRI | GAGGAG | 1 cut(s) | 2781 |
| BseXI | GCAGC | 4 cut(s) | 496, 1539, 1700, 2218 |
| BseYI | CCCAGC | 2 cut(s) | 212, 2693 |
| BsgI | GTGCAG | 2 cut(s) | 513, 1754 |
| BshFI | GGCC | 8 cut(s) | 712, 1038, 1131, 1227, 1399, 2182, 2393, 3237 |
| BshNI | GGYRCC | 1 cut(s) | 281 |
| BsiSI | CCGG | 1 cut(s) | 208 |
| BslFI | GGGAC | 4 cut(s) | 339, 1028, 2380, 3010 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 214, 370, 840, 1234, 1752, 1774, 1870, 2105, 2838 |
| BsmAI | GTCTC | 4 cut(s) | 109, 1902, 2037, 2784 |
| BsmFI | GGGAC | 4 cut(s) | 339, 1028, 2380, 3010 |
| BsmI | GAATGC | 2 cut(s) | 1213, 2227 |
| BsnI | GGCC | 8 cut(s) | 712, 1038, 1131, 1227, 1399, 2182, 2393, 3237 |
| Bso31I | GGTCTC | 1 cut(s) | 1902 |
| Bsp119I | TTCGAA | 1 cut(s) | 636 |
| Bsp1407I | TGTACA | 1 cut(s) | 2410 |
| Bsp143I | GATC | 9 cut(s) | 115, 171, 322, 544, 667, 988, 1533, 1568, 1678 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1366 |
| Bsp19I | CCATGG | 1 cut(s) | 3066 |
| BspACI | CCGC | 5 cut(s) | 238, 293, 507, 611, 1297 |
| BspANI | GGCC | 8 cut(s) | 712, 1038, 1131, 1227, 1399, 2182, 2393, 3237 |
| BspCNI | CTCAG | 4 cut(s) | 1118, 1191, 2067, 2583 |
| BspLI | GGNNCC | 7 cut(s) | 283, 355, 448, 499, 1714, 2555, 2817 |
| BspMAI | CTGCAG | 3 cut(s) | 2178, 2604, 3166 |
| BspMI | ACCTGC | 1 cut(s) | 2181 |
| BspOI | GCTAGC | 1 cut(s) | 69 |
| BspPI | GGATC | 2 cut(s) | 675, 1576 |
| BspQI | GCTCTTC | 1 cut(s) | 132 |
| BspT104I | TTCGAA | 1 cut(s) | 636 |
| BspT107I | GGYRCC | 1 cut(s) | 281 |
| BspTI | CTTAAG | 1 cut(s) | 605 |
| BspTNI | GGTCTC | 1 cut(s) | 1902 |
| BsrBI | CCGCTC | 1 cut(s) | 1297 |
| BsrDI | GCAATG | 5 cut(s) | 106, 851, 2745, 2939, 2948 |
| BsrGI | TGTACA | 1 cut(s) | 2410 |
| BsrI | ACTGG | 5 cut(s) | 153, 188, 895, 1228, 2344 |
| BssECI | CCNNGG | 7 cut(s) | 349, 468, 1132, 1234, 1618, 2086, 3066 |
| BssMI | GATC | 9 cut(s) | 115, 171, 322, 544, 667, 988, 1533, 1568, 1678 |
| BssNAI | GTATAC | 2 cut(s) | 49, 616 |
| BssNI | GRCGYC | 1 cut(s) | 2999 |
| BssT1I | CCWWGG | 6 cut(s) | 349, 468, 1132, 1618, 2086, 3066 |
| Bst1107I | GTATAC | 2 cut(s) | 49, 616 |
| Bst2UI | CCWGG | 2 cut(s) | 1235, 2820 |
| Bst4CI | ACNGT | 7 cut(s) | 56, 482, 795, 840, 1054, 2373, 2415 |
| Bst6I | CTCTTC | 4 cut(s) | 132, 2269, 2415, 2830 |
| BstACI | GRCGYC | 1 cut(s) | 2999 |
| BstAFI | CTTAAG | 1 cut(s) | 605 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 2231, 2732 |
| BstAUI | TGTACA | 1 cut(s) | 2410 |
| BstBI | TTCGAA | 1 cut(s) | 636 |
| BstC8I | GCNNGC | 7 cut(s) | 67, 145, 232, 507, 714, 770, 1271 |
| BstDSI | CCRYGG | 1 cut(s) | 3066 |
| BstEII | GGTNACC | 1 cut(s) | 302 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1750 |
| BstF5I | GGATG | 6 cut(s) | 830, 1046, 1784, 2848, 2965, 3105 |
| BstKTI | GATC | 9 cut(s) | 118, 174, 325, 547, 670, 991, 1536, 1571, 1681 |
| BstMAI | GTCTC | 4 cut(s) | 109, 1902, 2037, 2784 |
| BstMBI | GATC | 9 cut(s) | 115, 171, 322, 544, 667, 988, 1533, 1568, 1678 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 71, 722, 1524, 2231, 2732 |
| BstNI | CCWGG | 2 cut(s) | 1235, 2820 |
| BstNSI | RCATGY | 5 cut(s) | 1066, 1492, 2545, 2732, 2908 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 2122 |
| BstPI | GGTNACC | 1 cut(s) | 302 |
| BstSCI | CCNGG | 3 cut(s) | 207, 1233, 2818 |
| BstSFI | CTRYAG | 6 cut(s) | 75, 720, 2174, 2600, 3162, 3220 |
| BstV1I | GCAGC | 4 cut(s) | 496, 1539, 1700, 2218 |
| BstV2I | GAAGAC | 3 cut(s) | 721, 1048, 1597 |
| BstX2I | RGATCY | 1 cut(s) | 544 |
| BstYI | RGATCY | 1 cut(s) | 544 |
| BstZ17I | GTATAC | 2 cut(s) | 49, 616 |
| BsuI | GTATCC | 1 cut(s) | 2606 |
| BsuRI | GGCC | 8 cut(s) | 712, 1038, 1131, 1227, 1399, 2182, 2393, 3237 |
| BtgI | CCRYGG | 1 cut(s) | 3066 |
| BtsCI | GGATG | 6 cut(s) | 830, 1046, 1784, 2848, 2965, 3105 |
| BtsI | GCAGTG | 3 cut(s) | 599, 2183, 3159 |
| BveI | ACCTGC | 1 cut(s) | 2181 |
| Cac8I | GCNNGC | 7 cut(s) | 67, 145, 232, 507, 714, 770, 1271 |
| Cfr13I | GGNCC | 7 cut(s) | 186, 256, 353, 447, 710, 821, 1713 |
| Csp6I | GTAC | 7 cut(s) | 89, 478, 966, 2411, 2463, 2531, 2572 |
| CviQI | GTAC | 7 cut(s) | 89, 478, 966, 2411, 2463, 2531, 2572 |
| DpnI | GATC | 9 cut(s) | 117, 173, 324, 546, 669, 990, 1535, 1570, 1680 |
| DpnII | GATC | 9 cut(s) | 115, 171, 322, 544, 667, 988, 1533, 1568, 1678 |
| DraIII | CACNNNGTG | 1 cut(s) | 840 |
| EaeI | YGGCCR | 2 cut(s) | 1397, 2391 |
| Eam1104I | CTCTTC | 4 cut(s) | 132, 2269, 2415, 2830 |
| EarI | CTCTTC | 4 cut(s) | 132, 2269, 2415, 2830 |
| Eco130I | CCWWGG | 6 cut(s) | 349, 468, 1132, 1618, 2086, 3066 |
| Eco147I | AGGCCT | 1 cut(s) | 1131 |
| Eco31I | GGTCTC | 1 cut(s) | 1902 |
| Eco32I | GATATC | 1 cut(s) | 1083 |
| Eco47I | GGWCC | 6 cut(s) | 186, 256, 353, 447, 821, 1713 |
| Eco91I | GGTNACC | 1 cut(s) | 302 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1750 |
| EcoO109I | RGGNCCY | 3 cut(s) | 353, 447, 710 |
| EcoO65I | GGTNACC | 1 cut(s) | 302 |
| EcoRI | GAATTC | 3 cut(s) | 750, 1985, 3215 |
| EcoRII | CCWGG | 2 cut(s) | 1233, 2818 |
| EcoRV | GATATC | 1 cut(s) | 1083 |
| EcoT14I | CCWWGG | 6 cut(s) | 349, 468, 1132, 1618, 2086, 3066 |
| EcoT22I | ATGCAT | 2 cut(s) | 1165, 3053 |
| ErhI | CCWWGG | 6 cut(s) | 349, 468, 1132, 1618, 2086, 3066 |
| FaqI | GGGAC | 4 cut(s) | 339, 1028, 2380, 3010 |
| FauI | CCCGC | 1 cut(s) | 514 |
| FauNDI | CATATG | 1 cut(s) | 2308 |
| FbaI | TGATCA | 1 cut(s) | 115 |
| FblI | GTMKAC | 3 cut(s) | 48, 379, 615 |
| Fnu4HI | GCNGC | 5 cut(s) | 510, 1298, 1528, 1689, 2232 |
| FokI | GGATG | 6 cut(s) | 817, 1033, 1771, 2855, 2972, 3112 |
| Fsp4HI | GCNGC | 5 cut(s) | 510, 1298, 1528, 1689, 2232 |
| GluI | GCNGC | 5 cut(s) | 510, 1298, 1528, 1689, 2232 |
| GsaI | CCCAGC | 2 cut(s) | 216, 2697 |
| GsuI | CTGGAG | 2 cut(s) | 1326, 2802 |
| HaeIII | GGCC | 8 cut(s) | 712, 1038, 1131, 1227, 1399, 2182, 2393, 3237 |
| HapII | CCGG | 1 cut(s) | 208 |
| Hin1I | GRCGYC | 1 cut(s) | 2999 |
| HincII | GTYRAC | 1 cut(s) | 1725 |
| HindII | GTYRAC | 1 cut(s) | 1725 |
| HindIII | AAGCTT | 1 cut(s) | 1978 |
| HpaI | GTTAAC | 1 cut(s) | 1725 |
| HpaII | CCGG | 1 cut(s) | 208 |
| Hpy188I | TCNGA | 9 cut(s) | 1405, 1506, 1550, 2057, 2117, 2297, 2377, 2578, 2959 |
| HpyAV | CCTTC | 6 cut(s) | 152, 1674, 1937, 2096, 2193, 2292 |
| HpyCH4III | ACNGT | 7 cut(s) | 56, 482, 795, 840, 1054, 2373, 2415 |
| HpyCH4IV | ACGT | 4 cut(s) | 2470, 2999, 3183, 3202 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 71, 722, 1524, 2231, 2732 |
| HpySE526I | ACGT | 4 cut(s) | 2470, 2999, 3183, 3202 |
| Hsp92I | GRCGYC | 1 cut(s) | 2999 |
| Ksp22I | TGATCA | 1 cut(s) | 115 |
| KspAI | GTTAAC | 1 cut(s) | 1725 |
| Kzo9I | GATC | 9 cut(s) | 115, 171, 322, 544, 667, 988, 1533, 1568, 1678 |
| LguI | GCTCTTC | 1 cut(s) | 132 |
| LmnI | GCTCC | 6 cut(s) | 295, 721, 2108, 2553, 2768, 2821 |
| Lsp1109I | GCAGC | 4 cut(s) | 496, 1539, 1700, 2218 |
| LweI | GCATC | 5 cut(s) | 156, 781, 1172, 2950, 3103 |
| MaeII | ACGT | 4 cut(s) | 2470, 2999, 3183, 3202 |
| MalI | GATC | 9 cut(s) | 117, 173, 324, 546, 669, 990, 1535, 1570, 1680 |
| MbiI | CCGCTC | 1 cut(s) | 1297 |
| MboI | GATC | 9 cut(s) | 115, 171, 322, 544, 667, 988, 1533, 1568, 1678 |
| MfeI | CAATTG | 1 cut(s) | 2802 |
| MflI | RGATCY | 1 cut(s) | 544 |
| MlsI | TGGCCA | 1 cut(s) | 2393 |
| MluNI | TGGCCA | 1 cut(s) | 2393 |
| MlyI | GAGTC | 3 cut(s) | 252, 916, 2076 |
| MmeI | TCCRAC | 3 cut(s) | 1601, 2397, 2893 |
| Mox20I | TGGCCA | 1 cut(s) | 2393 |
| Mph1103I | ATGCAT | 2 cut(s) | 1165, 3053 |
| MroXI | GAANNNNTTC | 3 cut(s) | 642, 2278, 2827 |
| MscI | TGGCCA | 1 cut(s) | 2393 |
| MseI | TTAA | 8 cut(s) | 596, 606, 1032, 1475, 1724, 2397, 2990, 3241 |
| MslI | CAYNNNNRTG | 1 cut(s) | 2191 |
| Msp20I | TGGCCA | 1 cut(s) | 2393 |
| MspA1I | CMGCKG | 1 cut(s) | 509 |
| MspCI | CTTAAG | 1 cut(s) | 605 |
| MspI | CCGG | 1 cut(s) | 208 |
| MspR9I | CCNGG | 3 cut(s) | 209, 1235, 2820 |
| MunI | CAATTG | 1 cut(s) | 2802 |
| Mva1269I | GAATGC | 2 cut(s) | 1213, 2227 |
| MvaI | CCWGG | 2 cut(s) | 1235, 2820 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 71, 722, 1524, 2231, 2732 |
| NciI | CCSGG | 1 cut(s) | 209 |
| NcoI | CCATGG | 1 cut(s) | 3066 |
| NdeI | CATATG | 1 cut(s) | 2308 |
| NdeII | GATC | 9 cut(s) | 115, 171, 322, 544, 667, 988, 1533, 1568, 1678 |
| NheI | GCTAGC | 1 cut(s) | 65 |
| NlaIV | GGNNCC | 7 cut(s) | 283, 355, 448, 499, 1714, 2555, 2817 |
| NmuCI | GTSAC | 5 cut(s) | 1011, 1622, 1837, 2239, 3000 |
| NsiI | ATGCAT | 2 cut(s) | 1165, 3053 |
| NspI | RCATGY | 5 cut(s) | 1066, 1492, 2545, 2732, 2908 |
| NspV | TTCGAA | 1 cut(s) | 636 |
| PaqCI | CACCTGC | 1 cut(s) | 2181 |
| PceI | AGGCCT | 1 cut(s) | 1131 |
| PciI | ACATGT | 4 cut(s) | 1062, 1488, 2728, 2904 |
| PciSI | GCTCTTC | 1 cut(s) | 132 |
| PctI | GAATGC | 2 cut(s) | 1213, 2227 |
| PdmI | GAANNNNTTC | 3 cut(s) | 642, 2278, 2827 |
| PfeI | GAWTC | 8 cut(s) | 408, 1310, 1501, 2023, 2132, 2923, 2981, 3083 |
| PflFI | GACNNNGTC | 1 cut(s) | 2371 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 370, 840, 2105 |
| PfoI | TCCNGGA | 1 cut(s) | 2818 |
| PkrI | GCNGC | 5 cut(s) | 511, 1299, 1529, 1690, 2233 |
| PleI | GAGTC | 3 cut(s) | 251, 916, 2076 |
| PpsI | GAGTC | 3 cut(s) | 251, 916, 2076 |
| PpuMI | RGGWCCY | 2 cut(s) | 353, 447 |
| PscI | ACATGT | 4 cut(s) | 1062, 1488, 2728, 2904 |
| PshAI | GACNNNNGTC | 1 cut(s) | 2122 |
| Psp5II | RGGWCCY | 2 cut(s) | 353, 447 |
| Psp6I | CCWGG | 2 cut(s) | 1233, 2818 |
| PspEI | GGTNACC | 1 cut(s) | 302 |
| PspFI | CCCAGC | 2 cut(s) | 212, 2693 |
| PspGI | CCWGG | 2 cut(s) | 1233, 2818 |
| PspN4I | GGNNCC | 7 cut(s) | 283, 355, 448, 499, 1714, 2555, 2817 |
| PspPI | GGNCC | 7 cut(s) | 186, 256, 353, 447, 710, 821, 1713 |
| PspPPI | RGGWCCY | 2 cut(s) | 353, 447 |
| PstI | CTGCAG | 3 cut(s) | 2178, 2604, 3166 |
| PsuI | RGATCY | 1 cut(s) | 544 |
| PsyI | GACNNNGTC | 1 cut(s) | 2371 |
| RsaI | GTAC | 7 cut(s) | 90, 479, 967, 2412, 2464, 2532, 2573 |
| RsaNI | GTAC | 7 cut(s) | 89, 478, 966, 2411, 2463, 2531, 2572 |
| RseI | CAYNNNNRTG | 1 cut(s) | 2191 |
| SapI | GCTCTTC | 1 cut(s) | 132 |
| SaqAI | TTAA | 8 cut(s) | 596, 606, 1032, 1475, 1724, 2397, 2990, 3241 |
| SatI | GCNGC | 5 cut(s) | 510, 1298, 1528, 1689, 2232 |
| Sau3AI | GATC | 9 cut(s) | 115, 171, 322, 544, 667, 988, 1533, 1568, 1678 |
| Sau96I | GGNCC | 7 cut(s) | 186, 256, 353, 447, 710, 821, 1713 |
| ScaI | AGTACT | 1 cut(s) | 2464 |
| SchI | GAGTC | 3 cut(s) | 252, 916, 2076 |
| ScrFI | CCNGG | 3 cut(s) | 209, 1235, 2820 |
| SfaNI | GCATC | 5 cut(s) | 156, 781, 1172, 2950, 3103 |
| SfcI | CTRYAG | 6 cut(s) | 75, 720, 2174, 2600, 3162, 3220 |
| SfuI | TTCGAA | 1 cut(s) | 636 |
| SinI | GGWCC | 6 cut(s) | 186, 256, 353, 447, 821, 1713 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 2191 |
| SmlI | CTYRAG | 4 cut(s) | 605, 1292, 1522, 2558 |
| SmoI | CTYRAG | 4 cut(s) | 605, 1292, 1522, 2558 |
| SpeI | ACTAGT | 1 cut(s) | 1091 |
| SseBI | AGGCCT | 1 cut(s) | 1131 |
| SsiI | CCGC | 5 cut(s) | 238, 293, 507, 611, 1297 |
| SspI | AATATT | 3 cut(s) | 784, 910, 2614 |
| StuI | AGGCCT | 1 cut(s) | 1131 |
| StyD4I | CCNGG | 3 cut(s) | 207, 1233, 2818 |
| StyI | CCWWGG | 6 cut(s) | 349, 468, 1132, 1618, 2086, 3066 |
| TaaI | ACNGT | 7 cut(s) | 56, 482, 795, 840, 1054, 2373, 2415 |
| TaiI | ACGT | 4 cut(s) | 2473, 3002, 3186, 3205 |
| TaqI | TCGA | 7 cut(s) | 13, 636, 1166, 1205, 1313, 1877, 2476 |
| TatI | WGTACW | 4 cut(s) | 88, 2410, 2462, 2571 |
| TauI | GCSGC | 1 cut(s) | 1300 |
| TfiI | GAWTC | 8 cut(s) | 408, 1310, 1501, 2023, 2132, 2923, 2981, 3083 |
| Tru1I | TTAA | 8 cut(s) | 596, 606, 1032, 1475, 1724, 2397, 2990, 3241 |
| Tru9I | TTAA | 8 cut(s) | 596, 606, 1032, 1475, 1724, 2397, 2990, 3241 |
| TseFI | GTSAC | 5 cut(s) | 1011, 1622, 1837, 2239, 3000 |
| TseI | GCWGC | 4 cut(s) | 509, 1527, 1688, 2231 |
| Tsp45I | GTSAC | 5 cut(s) | 1011, 1622, 1837, 2239, 3000 |
| Tth111I | GACNNNGTC | 1 cut(s) | 2371 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 370, 840, 2105 |
| Vha464I | CTTAAG | 1 cut(s) | 605 |
| VpaK11BI | GGWCC | 6 cut(s) | 186, 256, 353, 447, 821, 1713 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1750 |
| XbaI | TCTAGA | 2 cut(s) | 1000, 2035 |
| XceI | RCATGY | 5 cut(s) | 1066, 1492, 2545, 2732, 2908 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 837, 1746, 2265 |
| XmaJI | CCTAGG | 1 cut(s) | 1618 |
| XmiI | GTMKAC | 3 cut(s) | 48, 379, 615 |
| XmnI | GAANNNNTTC | 3 cut(s) | 642, 2278, 2827 |
| ZraI | GACGTC | 1 cut(s) | 3000 |
| ZrmI | AGTACT | 1 cut(s) | 2464 |
| Zsp2I | ATGCAT | 2 cut(s) | 1165, 3053 |