RLG00000021260

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000563
Physical Location & Seq
Forward (+)
73489924 .. 73490916
993 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021260

Sequence Viewer

Length: 921 bp
ATGTGGAACACGCAGATGCTGAACAAGGAGTGCTTTTCAAACGTGAAGAAGACATGGGATCGACTATGCCGTCTTAATATTGGCAAGCAAATGTGTACCTCCGTCTCCTCAAAACAGCCCAACAACAGAGTGGTTTTTGTACTTGAATATGCGCAGTCGAGCTGTCCTCGTAGGACAATTCCCACCTTGATGAAACCAGTAGTTGTTGGTTCCAAAGTTTATATGTGGGGTGGTATATCGGACCCCAACGTATATTCATCGAACCCCAATGTATATTCCTTTGATCCAGCTACGAGTCCACCCTTCCGTCTCTGCGAGGGTCTGATTTCCAGATTGGTTCCACCCAAGATTGGTTTCCCTTACATTATAGTGTTCAGCCTTGAGGAGAAAATCTATGTACTTGAAGAAGATCTATCCCATTTTAGGGTTTTTGATACGGTTCACCAATCCTGGAAAGACCTTCCTCACCCCCCTTATTTGCCTAATACTGATCCCCGAGTGTCTGACTACTGCGTTTGCAGCCACATACTCTATATCAGTACCGGACCAGACATTTCATTAATTTTTGACACTCTTGAAGAGAAATGGGAGGATGCGAAGGCAATCCATAATGGTGTTATAGAGAGATTCTTGGCTTTCACAGAATTTGAGGGATTTTTAATTGGCGTGACATCGTCGTATATGAATAAGGTCGTTGCTTATAAGTTGGATTCAAATGGAATCCCCAACCCTGTGTCGTATCAAGTGCTACGTGAGATATCTTCTACAGGAGAGATAGCTTTCTTGGGTAAATGTGATGGTGGCCGACTGTGGTTGGTGAATTGTGTCGGGGATTACTCTTATAACCGTATGTATAATGCCACACAGGTAATAGTGTTTCAAGCTTCCATCTCAAAGATGGCAATCAAGCTCTCTCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

307

Amino Acids

34.75

Weight (kDa)

7.52

Isoelectric Point (pI)

45.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Kelch_FKB95 PF25210 40 - 206 8.5e-07 FKB95, Kelch-repeats domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 702, 843
AasI GACNNNNNNGTC 1 cut(s) 69
Acc16I TGCGCA 1 cut(s) 153
AclWI GGATC 3 cut(s) 66, 278, 485
AcoI YGGCCR 1 cut(s) 802
AcsI RAATTY 1 cut(s) 644
AfaI GTAC 4 cut(s) 97, 141, 399, 541
AfiI CCNNNNNNNGG 3 cut(s) 350, 423, 424
AgsI TTSAA 6 cut(s) 39, 146, 404, 578, 714, 881
AjnI CCWGG 1 cut(s) 449
AjuI GAANNNNNNNTTGG 2 cut(s) 338, 370
AluBI AGCT 5 cut(s) 162, 290, 779, 884, 910
AluI AGCT 5 cut(s) 162, 290, 779, 884, 910
Alw26I GTCTC 2 cut(s) 109, 314
AlwI GGATC 3 cut(s) 66, 278, 485
AlwNI CAGNNNCTG 1 cut(s) 19
Ama87I CYCGRG 1 cut(s) 495
AoxI GGCC 1 cut(s) 802
ApeKI GCWGC 1 cut(s) 519
ApoI RAATTY 1 cut(s) 644
AseI ATTAAT 1 cut(s) 560
AspLEI GCGC 1 cut(s) 154
AspS9I GGNCC 2 cut(s) 241, 545
AsuHPI GGTGA 3 cut(s) 434, 458, 829
AvaI CYCGRG 1 cut(s) 495
AvaII GGWCC 2 cut(s) 241, 545
BbsI GAAGAC 1 cut(s) 56
BbvI GCAGC 1 cut(s) 531
BccI CCATC 3 cut(s) 791, 892, 896
BceAI ACGGC 1 cut(s) 54
BciT130I CCWGG 1 cut(s) 451
BcoDI GTCTC 2 cut(s) 109, 314
BfmI CTRYAG 2 cut(s) 765, 917
BglII AGATCT 1 cut(s) 409
BisI GCNGC 1 cut(s) 520
BlsI GCNGC 1 cut(s) 521
Bme1390I CCNGG 1 cut(s) 451
Bme18I GGWCC 2 cut(s) 241, 545
BmeT110I CYCGRG 1 cut(s) 495
BmgT120I GGNCC 2 cut(s) 241, 545
BmiI GGNNCC 3 cut(s) 211, 243, 339
BmrFI CCNGG 1 cut(s) 451
BmsI GCATC 2 cut(s) 6, 583
BpiI GAAGAC 1 cut(s) 56
BplI GAGNNNNNCTC 2 cut(s) 151, 183
BpuEI CTTGAG 1 cut(s) 401
BsaAI YACGTR 1 cut(s) 752
BsaBI GATNNNNATC 1 cut(s) 902
BsaWI WCCGGW 1 cut(s) 542
Bsc4I CCNNNNNNNGG 3 cut(s) 350, 423, 424
Bse1I ACTGG 1 cut(s) 197
Bse8I GATNNNNATC 1 cut(s) 902
BseBI CCWGG 1 cut(s) 451
BseGI GGATG 1 cut(s) 598
BseJI GATNNNNATC 1 cut(s) 902
BseLI CCNNNNNNNGG 3 cut(s) 350, 423, 424
BseNI ACTGG 1 cut(s) 197
BseRI GAGGAG 2 cut(s) 97, 398
BseXI GCAGC 1 cut(s) 531
BshFI GGCC 1 cut(s) 804
BsiHKCI CYCGRG 1 cut(s) 495
BsiSI CCGG 1 cut(s) 543
BslI CCNNNNNNNGG 3 cut(s) 350, 423, 424
BsmAI GTCTC 2 cut(s) 109, 314
BsmBI CGTCTC 2 cut(s) 109, 314
BsnI GGCC 1 cut(s) 804
BsoBI CYCGRG 1 cut(s) 495
Bsp143I GATC 4 cut(s) 58, 283, 409, 490
BspANI GGCC 1 cut(s) 804
BspLI GGNNCC 3 cut(s) 211, 243, 339
BspPI GGATC 3 cut(s) 66, 278, 485
BsrI ACTGG 1 cut(s) 197
BssMI GATC 4 cut(s) 58, 283, 409, 490
Bst2UI CCWGG 1 cut(s) 451
Bst4CI ACNGT 3 cut(s) 439, 810, 848
Bst6I CTCTTC 1 cut(s) 573
BstBAI YACGTR 1 cut(s) 752
BstC8I GCNNGC 1 cut(s) 86
BstF5I GGATG 1 cut(s) 598
BstHHI GCGC 1 cut(s) 154
BstKTI GATC 4 cut(s) 61, 286, 412, 493
BstMAI GTCTC 2 cut(s) 109, 314
BstMBI GATC 4 cut(s) 58, 283, 409, 490
BstMWI GCNNNNNNNGC 1 cut(s) 519
BstNI CCWGG 1 cut(s) 451
BstSCI CCNGG 1 cut(s) 449
BstSFI CTRYAG 2 cut(s) 765, 917
BstV1I GCAGC 1 cut(s) 531
BstV2I GAAGAC 1 cut(s) 56
BstX2I RGATCY 1 cut(s) 409
BstYI RGATCY 1 cut(s) 409
BsuRI GGCC 1 cut(s) 804
BtsCI GGATG 1 cut(s) 598
Cac8I GCNNGC 1 cut(s) 86
CaiI CAGNNNCTG 1 cut(s) 19
CfoI GCGC 1 cut(s) 154
Cfr13I GGNCC 2 cut(s) 241, 545
Csp6I GTAC 4 cut(s) 96, 140, 398, 540
CviAII CATG 1 cut(s) 54
CviQI GTAC 4 cut(s) 96, 140, 398, 540
DpnI GATC 4 cut(s) 60, 285, 411, 492
DpnII GATC 4 cut(s) 58, 283, 409, 490
DrdI GACNNNNNNGTC 1 cut(s) 69
DseDI GACNNNNNNGTC 1 cut(s) 69
EaeI YGGCCR 1 cut(s) 802
Eam1104I CTCTTC 1 cut(s) 573
EarI CTCTTC 1 cut(s) 573
Eco32I GATATC 1 cut(s) 759
Eco47I GGWCC 2 cut(s) 241, 545
Eco88I CYCGRG 1 cut(s) 495
EcoRII CCWGG 1 cut(s) 449
EcoRV GATATC 1 cut(s) 759
Esp3I CGTCTC 2 cut(s) 109, 314
FaeI CATG 1 cut(s) 57
FalI AAGNNNNNCTT 2 cut(s) 17, 49
FatI CATG 1 cut(s) 53
Fnu4HI GCNGC 1 cut(s) 520
FokI GGATG 1 cut(s) 605
Fsp4HI GCNGC 1 cut(s) 520
FspI TGCGCA 1 cut(s) 153
GlaI GCGC 1 cut(s) 153
GluI GCNGC 1 cut(s) 520
HaeIII GGCC 1 cut(s) 804
HapII CCGG 1 cut(s) 543
HhaI GCGC 1 cut(s) 154
Hin1II CATG 1 cut(s) 57
Hin6I GCGC 1 cut(s) 152
HinP1I GCGC 1 cut(s) 152
HindIII AAGCTT 1 cut(s) 882
HinfI GANTC 4 cut(s) 295, 627, 710, 720
HpaII CCGG 1 cut(s) 543
HphI GGTGA 3 cut(s) 434, 458, 829
Hpy166II GTNNAC 3 cut(s) 96, 299, 442
Hpy188I TCNGA 3 cut(s) 241, 324, 505
Hpy188III TCNNGA 2 cut(s) 330, 575
Hpy8I GTNNAC 3 cut(s) 96, 299, 442
Hpy99I CGWCG 1 cut(s) 679
HpyAV CCTTC 3 cut(s) 313, 470, 592
HpyCH4III ACNGT 3 cut(s) 439, 810, 848
HpyCH4IV ACGT 3 cut(s) 42, 249, 751
HpyCH4V TGCA 1 cut(s) 519
HpyF10VI GCNNNNNNNGC 1 cut(s) 519
HpySE526I ACGT 3 cut(s) 42, 249, 751
Hsp92II CATG 1 cut(s) 57
HspAI GCGC 1 cut(s) 152
Kzo9I GATC 4 cut(s) 58, 283, 409, 490
Lsp1109I GCAGC 1 cut(s) 531
LweI GCATC 2 cut(s) 6, 583
MaeII ACGT 3 cut(s) 42, 249, 751
MaeIII GTNAC 1 cut(s) 667
MalI GATC 4 cut(s) 60, 285, 411, 492
MboI GATC 4 cut(s) 58, 283, 409, 490
MboII GAAGA 6 cut(s) 58, 61, 416, 419, 590, 753
MflI RGATCY 1 cut(s) 409
MluCI AATT 5 cut(s) 177, 561, 644, 660, 820
MlyI GAGTC 1 cut(s) 304
MmeI TCCRAC 1 cut(s) 687
MnlI CCTC 8 cut(s) 109, 118, 177, 310, 376, 474, 583, 643
MseI TTAA 3 cut(s) 75, 560, 659
MslI CAYNNNNRTG 4 cut(s) 14, 188, 368, 612
MspI CCGG 1 cut(s) 543
MspR9I CCNGG 1 cut(s) 451
MvaI CCWGG 1 cut(s) 451
MwoI GCNNNNNNNGC 1 cut(s) 519
NdeII GATC 4 cut(s) 58, 283, 409, 490
NlaIII CATG 1 cut(s) 57
NlaIV GGNNCC 3 cut(s) 211, 243, 339
NmuCI GTSAC 1 cut(s) 667
NsbI TGCGCA 1 cut(s) 153
PcsI WCGNNNNNNNCGW 1 cut(s) 67
PfeI GAWTC 3 cut(s) 627, 710, 720
PflFI GACNNNGTC 1 cut(s) 673
PfoI TCCNGGA 1 cut(s) 449
PkrI GCNGC 1 cut(s) 521
PleI GAGTC 1 cut(s) 303
PpsI GAGTC 1 cut(s) 303
Ppu21I YACGTR 1 cut(s) 752
PshBI ATTAAT 1 cut(s) 560
PsiI TTATAA 2 cut(s) 702, 843
Psp6I CCWGG 1 cut(s) 449
PspGI CCWGG 1 cut(s) 449
PspN4I GGNNCC 3 cut(s) 211, 243, 339
PspPI GGNCC 2 cut(s) 241, 545
PstNI CAGNNNCTG 1 cut(s) 19
PsuI RGATCY 1 cut(s) 409
PsyI GACNNNGTC 1 cut(s) 673
RsaI GTAC 4 cut(s) 97, 141, 399, 541
RsaNI GTAC 4 cut(s) 96, 140, 398, 540
RseI CAYNNNNRTG 4 cut(s) 14, 188, 368, 612
SaqAI TTAA 3 cut(s) 75, 560, 659
SatI GCNGC 1 cut(s) 520
Sau3AI GATC 4 cut(s) 58, 283, 409, 490
Sau96I GGNCC 2 cut(s) 241, 545
SchI GAGTC 1 cut(s) 304
ScrFI CCNGG 1 cut(s) 451
SfaNI GCATC 2 cut(s) 6, 583
SfcI CTRYAG 2 cut(s) 765, 917
SinI GGWCC 2 cut(s) 241, 545
SmiMI CAYNNNNRTG 4 cut(s) 14, 188, 368, 612
SmlI CTYRAG 1 cut(s) 380
SmoI CTYRAG 1 cut(s) 380
Sse9I AATT 5 cut(s) 177, 561, 644, 660, 820
SspI AATATT 1 cut(s) 79
StyD4I CCNGG 1 cut(s) 449
TaaI ACNGT 3 cut(s) 439, 810, 848
TaiI ACGT 3 cut(s) 45, 252, 754
TaqI TCGA 3 cut(s) 61, 158, 260
TasI AATT 5 cut(s) 177, 561, 644, 660, 820
TatI WGTACW 2 cut(s) 139, 397
TfiI GAWTC 3 cut(s) 627, 710, 720
Tru1I TTAA 3 cut(s) 75, 560, 659
Tru9I TTAA 3 cut(s) 75, 560, 659
TseFI GTSAC 1 cut(s) 667
TseI GCWGC 1 cut(s) 519
Tsp45I GTSAC 1 cut(s) 667
TspDTI ATGAA 4 cut(s) 206, 246, 546, 698
TspGWI ACGGA 2 cut(s) 91, 296
Tth111I GACNNNGTC 1 cut(s) 673
VpaK11BI GGWCC 2 cut(s) 241, 545
VspI ATTAAT 1 cut(s) 560
XapI RAATTY 1 cut(s) 644
XcmI CCANNNNNNNNNTGG 2 cut(s) 127, 895
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.