Rroxscaffold_1G00000880

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000563
Physical Location & Seq
Reverse (-)
1296533 .. 1298893
2361 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00000880.1

Sequence Viewer

Length: 504 bp
ATGAGCCCCGCCACGAAACCAACACCATCAGCCTCGCCACGAGCCACCCACGAGAATCGTGTCGTCGAGCTCCGCCATGAGCCGGCGTTGCTCGAGCCCCAAGAGCCTCCGCAGATGCGAGCCCCGCCCGAGCCCTACGAGGCACCGCCGCCTAGGAGCTCCAAAACCCACTCACCGGATCTACACGAAAGCGACCTCGGTGCCCGGAGATGCTGCCCAATACCGCCACCAACCATGCATCTTGCCAAAACCACGAACCAAACACCTTCTCTCCGGACCTTAGCCCGGGGCAATGAAGTACCCGTTCGGCGGCCGGCACATGGACAATGCGGTGATGTTGGCGCTACCCGGGCCACTAGGAAATATTTTGGTGGTCTTACGGATAGACAAGTTTTGAAGACGGTGACGATGCAATCGTCGCCGGATATCGTTGATCGACTATGCGGTCTAAGTATCGGTGATCGTTTGTCTCCGAGCTCGAGGTTGAAATCGAAGCGCCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

167

Amino Acids

18.33

Weight (kDa)

10.11

Isoelectric Point (pI)

73.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 444
AccB1I GGYRCC 2 cut(s) 142, 200
AccIII TCCGGA 1 cut(s) 273
AclWI GGATC 1 cut(s) 186
AcoI YGGCCR 1 cut(s) 311
AfaI GTAC 1 cut(s) 300
AfiI CCNNNNNNNGG 5 cut(s) 82, 175, 285, 309, 320
AgsI TTSAA 2 cut(s) 397, 487
AluBI AGCT 3 cut(s) 70, 159, 477
AluI AGCT 3 cut(s) 70, 159, 477
Alw21I GWGCWC 3 cut(s) 72, 161, 479
Alw26I GTCTC 1 cut(s) 474
AlwI GGATC 1 cut(s) 186
Ama87I CYCGRG 5 cut(s) 92, 128, 285, 348, 478
Aor13HI TCCGGA 1 cut(s) 273
AoxI GGCC 2 cut(s) 311, 351
ApeKI GCWGC 1 cut(s) 213
AspA2I CCTAGG 1 cut(s) 152
AspLEI GCGC 2 cut(s) 344, 498
AspS9I GGNCC 2 cut(s) 276, 351
AsuC2I CCSGG 5 cut(s) 205, 286, 287, 349, 350
AsuHPI GGTGA 4 cut(s) 165, 344, 415, 470
AvaI CYCGRG 5 cut(s) 92, 128, 285, 348, 478
AvaII GGWCC 1 cut(s) 276
AvrII CCTAGG 1 cut(s) 152
BaeGI GKGCMC 1 cut(s) 205
BanI GGYRCC 2 cut(s) 142, 200
BanII GRGCYC 7 cut(s) 8, 72, 99, 124, 135, 161, 479
BauI CACGAG 2 cut(s) 39, 50
BbsI GAAGAC 1 cut(s) 404
Bbv12I GWGCWC 3 cut(s) 72, 161, 479
BbvI GCAGC 1 cut(s) 200
BccI CCATC 1 cut(s) 34
BcgI CGANNNNNNTGC 2 cut(s) 182, 216
BcnI CCSGG 5 cut(s) 205, 286, 287, 349, 350
BcoDI GTCTC 1 cut(s) 474
BfaI CTAG 2 cut(s) 153, 357
BfoI RGCGCY 2 cut(s) 345, 499
BisI GCNGC 3 cut(s) 149, 214, 311
BlnI CCTAGG 1 cut(s) 152
BlsI GCNGC 3 cut(s) 150, 215, 312
Bme1390I CCNGG 5 cut(s) 205, 286, 287, 349, 350
Bme18I GGWCC 1 cut(s) 276
BmeT110I CYCGRG 5 cut(s) 92, 128, 285, 348, 478
BmgT120I GGNCC 2 cut(s) 276, 351
BmiI GGNNCC 2 cut(s) 144, 202
BmrFI CCNGG 5 cut(s) 205, 286, 287, 349, 350
BmsI GCATC 4 cut(s) 105, 200, 247, 399
BpiI GAAGAC 1 cut(s) 404
Bpu10I CCTNAGC 1 cut(s) 280
BpuMI CCSGG 5 cut(s) 205, 286, 287, 349, 350
BsaJI CCNNGG 5 cut(s) 152, 196, 285, 286, 348
BsaWI WCCGGW 2 cut(s) 175, 273
BsaXI ACNNNNNCTCC 2 cut(s) 255, 285
Bsc4I CCNNNNNNNGG 5 cut(s) 82, 175, 285, 309, 320
Bse118I RCCGGY 2 cut(s) 82, 313
Bse3DI GCAATG 1 cut(s) 298
BseAI TCCGGA 1 cut(s) 273
BseDI CCNNGG 5 cut(s) 152, 196, 285, 286, 348
BseLI CCNNNNNNNGG 5 cut(s) 82, 175, 285, 309, 320
BseMI GCAATG 1 cut(s) 298
BseSI GKGCMC 1 cut(s) 205
BseX3I CGGCCG 1 cut(s) 311
BseXI GCAGC 1 cut(s) 200
Bsh1285I CGRYCG 1 cut(s) 314
BshFI GGCC 2 cut(s) 313, 353
BshNI GGYRCC 2 cut(s) 142, 200
BsiEI CGRYCG 1 cut(s) 314
BsiHKAI GWGCWC 3 cut(s) 72, 161, 479
BsiHKCI CYCGRG 5 cut(s) 92, 128, 285, 348, 478
BsiSI CCGG 8 cut(s) 83, 176, 205, 274, 286, 314, 349, 422
BslI CCNNNNNNNGG 5 cut(s) 82, 175, 285, 309, 320
BsmAI GTCTC 1 cut(s) 474
BsnI GGCC 2 cut(s) 313, 353
BsoBI CYCGRG 5 cut(s) 92, 128, 285, 348, 478
Bsp1286I GDGCHC 8 cut(s) 8, 72, 99, 124, 135, 161, 205, 479
Bsp13I TCCGGA 1 cut(s) 273
Bsp143I GATC 3 cut(s) 178, 433, 460
BspANI GGCC 2 cut(s) 313, 353
BspEI TCCGGA 1 cut(s) 273
BspLI GGNNCC 2 cut(s) 144, 202
BspPI GGATC 1 cut(s) 186
BspT107I GGYRCC 2 cut(s) 142, 200
BsrDI GCAATG 1 cut(s) 298
BsrFI RCCGGY 2 cut(s) 82, 313
BssAI RCCGGY 2 cut(s) 82, 313
BssECI CCNNGG 5 cut(s) 152, 196, 285, 286, 348
BssMI GATC 3 cut(s) 178, 433, 460
BssSI CACGAG 2 cut(s) 39, 50
BssT1I CCWWGG 1 cut(s) 152
Bst2BI CACGAG 2 cut(s) 39, 50
Bst4CI ACNGT 1 cut(s) 403
BstC8I GCNNGC 3 cut(s) 84, 120, 315
BstDEI CTNAG 2 cut(s) 280, 449
BstH2I RGCGCY 2 cut(s) 345, 499
BstHHI GCGC 2 cut(s) 344, 498
BstKTI GATC 3 cut(s) 181, 436, 463
BstMAI GTCTC 1 cut(s) 474
BstMBI GATC 3 cut(s) 178, 433, 460
BstMCI CGRYCG 1 cut(s) 314
BstMWI GCNNNNNNNGC 5 cut(s) 88, 103, 124, 350, 418
BstSCI CCNGG 5 cut(s) 203, 284, 285, 347, 348
BstSLI GKGCMC 1 cut(s) 205
BstV1I GCAGC 1 cut(s) 200
BstV2I GAAGAC 1 cut(s) 404
BstX2I RGATCY 1 cut(s) 178
BstYI RGATCY 1 cut(s) 178
BstZI CGGCCG 1 cut(s) 311
BsuRI GGCC 2 cut(s) 313, 353
Cac8I GCNNGC 3 cut(s) 84, 120, 315
CfoI GCGC 2 cut(s) 344, 498
Cfr10I RCCGGY 2 cut(s) 82, 313
Cfr13I GGNCC 2 cut(s) 276, 351
Cfr9I CCCGGG 2 cut(s) 285, 348
Csp6I GTAC 1 cut(s) 299
CviAII CATG 3 cut(s) 77, 235, 320
CviQI GTAC 1 cut(s) 299
DdeI CTNAG 2 cut(s) 280, 449
DpnI GATC 3 cut(s) 180, 435, 462
DpnII GATC 3 cut(s) 178, 433, 460
DrdI GACNNNNNNGTC 1 cut(s) 444
DseDI GACNNNNNNGTC 1 cut(s) 444
EaeI YGGCCR 1 cut(s) 311
EagI CGGCCG 1 cut(s) 311
EciI GGCGGA 1 cut(s) 62
Ecl136II GAGCTC 3 cut(s) 70, 159, 477
EclXI CGGCCG 1 cut(s) 311
Eco130I CCWWGG 1 cut(s) 152
Eco24I GRGCYC 7 cut(s) 8, 72, 99, 124, 135, 161, 479
Eco32I GATATC 1 cut(s) 427
Eco47I GGWCC 1 cut(s) 276
Eco52I CGGCCG 1 cut(s) 311
Eco53kI GAGCTC 3 cut(s) 70, 159, 477
Eco88I CYCGRG 5 cut(s) 92, 128, 285, 348, 478
EcoICRI GAGCTC 3 cut(s) 70, 159, 477
EcoRV GATATC 1 cut(s) 427
EcoT14I CCWWGG 1 cut(s) 152
EcoT22I ATGCAT 1 cut(s) 240
EcoT38I GRGCYC 7 cut(s) 8, 72, 99, 124, 135, 161, 479
ErhI CCWWGG 1 cut(s) 152
FaeI CATG 3 cut(s) 80, 238, 323
FaiI YATR 4 cut(s) 78, 236, 321, 442
FatI CATG 3 cut(s) 76, 234, 319
FauI CCCGC 2 cut(s) 16, 132
Fnu4HI GCNGC 3 cut(s) 149, 214, 311
FriOI GRGCYC 7 cut(s) 8, 72, 99, 124, 135, 161, 479
Fsp4HI GCNGC 3 cut(s) 149, 214, 311
FspBI CTAG 2 cut(s) 153, 357
GlaI GCGC 2 cut(s) 343, 497
GluI GCNGC 3 cut(s) 149, 214, 311
HaeII RGCGCY 2 cut(s) 345, 499
HaeIII GGCC 2 cut(s) 313, 353
HapII CCGG 8 cut(s) 83, 176, 205, 274, 286, 314, 349, 422
HhaI GCGC 2 cut(s) 344, 498
Hin1II CATG 3 cut(s) 80, 238, 323
Hin6I GCGC 2 cut(s) 342, 496
HinP1I GCGC 2 cut(s) 342, 496
HinfI GANTC 1 cut(s) 55
HpaII CCGG 8 cut(s) 83, 176, 205, 274, 286, 314, 349, 422
HphI GGTGA 4 cut(s) 165, 344, 415, 470
Hpy188I TCNGA 1 cut(s) 474
Hpy188III TCNNGA 1 cut(s) 274
Hpy99I CGWCG 2 cut(s) 68, 421
HpyAV CCTTC 1 cut(s) 276
HpyCH4III ACNGT 1 cut(s) 403
HpyCH4V TGCA 2 cut(s) 238, 412
HpyF10VI GCNNNNNNNGC 5 cut(s) 88, 103, 124, 350, 418
HpyF3I CTNAG 2 cut(s) 280, 449
Hsp92II CATG 3 cut(s) 80, 238, 323
HspAI GCGC 2 cut(s) 342, 496
Kpn2I TCCGGA 1 cut(s) 273
KroI GCCGGC 2 cut(s) 82, 313
KroNI GCCGGC 2 cut(s) 84, 315
Kzo9I GATC 3 cut(s) 178, 433, 460
LmnI GCTCC 3 cut(s) 75, 156, 164
LpnPI CCDG 8 cut(s) 96, 189, 218, 287, 299, 327, 362, 435
Lsp1109I GCAGC 1 cut(s) 200
LweI GCATC 4 cut(s) 105, 200, 247, 399
MaeI CTAG 2 cut(s) 153, 357
MaeIII GTNAC 1 cut(s) 403
MalI GATC 3 cut(s) 180, 435, 462
MboI GATC 3 cut(s) 178, 433, 460
MboII GAAGA 1 cut(s) 409
MflI RGATCY 1 cut(s) 178
MhlI GDGCHC 8 cut(s) 8, 72, 99, 124, 135, 161, 205, 479
MnlI CCTC 5 cut(s) 43, 117, 133, 206, 474
Mph1103I ATGCAT 1 cut(s) 240
MroI TCCGGA 1 cut(s) 273
MroNI GCCGGC 2 cut(s) 82, 313
MspI CCGG 8 cut(s) 83, 176, 205, 274, 286, 314, 349, 422
MspR9I CCNGG 5 cut(s) 205, 286, 287, 349, 350
MwoI GCNNNNNNNGC 5 cut(s) 88, 103, 124, 350, 418
NaeI GCCGGC 2 cut(s) 84, 315
NciI CCSGG 5 cut(s) 205, 286, 287, 349, 350
NdeII GATC 3 cut(s) 178, 433, 460
NgoMIV GCCGGC 2 cut(s) 82, 313
NlaIII CATG 3 cut(s) 80, 238, 323
NlaIV GGNNCC 2 cut(s) 144, 202
NmuCI GTSAC 1 cut(s) 403
NsiI ATGCAT 1 cut(s) 240
PaeR7I CTCGAG 2 cut(s) 92, 478
PcsI WCGNNNNNNNCGW 1 cut(s) 413
PdiI GCCGGC 2 cut(s) 84, 315
PfeI GAWTC 1 cut(s) 55
PkrI GCNGC 3 cut(s) 150, 215, 312
Psp124BI GAGCTC 3 cut(s) 72, 161, 479
PspN4I GGNNCC 2 cut(s) 144, 202
PspPI GGNCC 2 cut(s) 276, 351
PspXI VCTCGAGB 2 cut(s) 92, 478
PsuI RGATCY 1 cut(s) 178
RsaI GTAC 1 cut(s) 300
RsaNI GTAC 1 cut(s) 299
SacI GAGCTC 3 cut(s) 72, 161, 479
SatI GCNGC 3 cut(s) 149, 214, 311
Sau3AI GATC 3 cut(s) 178, 433, 460
Sau96I GGNCC 2 cut(s) 276, 351
ScrFI CCNGG 5 cut(s) 205, 286, 287, 349, 350
SduI GDGCHC 8 cut(s) 8, 72, 99, 124, 135, 161, 205, 479
SetI ASST 7 cut(s) 72, 161, 198, 268, 281, 479, 485
SfaNI GCATC 4 cut(s) 105, 200, 247, 399
Sfr274I CTCGAG 2 cut(s) 92, 478
SinI GGWCC 1 cut(s) 276
SlaI CTCGAG 2 cut(s) 92, 478
SmaI CCCGGG 2 cut(s) 287, 350
SmlI CTYRAG 2 cut(s) 92, 478
SmoI CTYRAG 2 cut(s) 92, 478
SspI AATATT 1 cut(s) 365
SspMI CTAG 2 cut(s) 153, 357
SstI GAGCTC 3 cut(s) 72, 161, 479
StyD4I CCNGG 5 cut(s) 203, 284, 285, 347, 348
StyI CCWWGG 1 cut(s) 152
TaaI ACNGT 1 cut(s) 403
TaqI TCGA 5 cut(s) 66, 93, 436, 479, 491
TauI GCSGC 2 cut(s) 151, 313
TfiI GAWTC 1 cut(s) 55
TseFI GTSAC 1 cut(s) 403
TseI GCWGC 1 cut(s) 213
Tsp45I GTSAC 1 cut(s) 403
TspDTI ATGAA 1 cut(s) 309
TspGWI ACGGA 1 cut(s) 395
TspMI CCCGGG 2 cut(s) 285, 348
VpaK11BI GGWCC 1 cut(s) 276
XhoI CTCGAG 2 cut(s) 92, 478
XmaI CCCGGG 2 cut(s) 285, 348
XmaJI CCTAGG 1 cut(s) 152
XspI CTAG 2 cut(s) 153, 357
Zsp2I ATGCAT 1 cut(s) 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.