Rh5BG515800

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Reverse (-)
81711542 .. 81711892
351 bp
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UTR
Exon/CDS
Intron
Rh5BG515800.1

Sequence Viewer

Length: 351 bp
ATGCCTCATAATGGCAAAGAGCTTGTTTCTTATCAGTTGGATTCAAATGGTATCTTCAAGCCATATAAGGTGTTACATGAACTGCAGGGAATATTCCGTAATTCTTCACTTGTTTTTGACTATTTCCTAGGTAAATGTGATGATGAACGTATATGGTTGGTGTATTCTGGCATGGATGGTCGAAATTATTGGAATACATGGGTAGTAGTGTTGCGAGTTTTCACCTCAATCGACAATGTTGGCAATTCAGTCCTCTCAGTAGACATCGAGGCTGCAGTGTTTGCATTCCAACTGGTGTTGTTTACCGATCAGTTCAGCTTTCTCATTGTGTCATCTTTTGTAGAATCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

116

Amino Acids

13.35

Weight (kDa)

4.74

Isoelectric Point (pI)

20.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 261
AfiI CCNNNNNNNGG 1 cut(s) 11
AgsI TTSAA 2 cut(s) 45, 58
AluBI AGCT 2 cut(s) 22, 318
AluI AGCT 2 cut(s) 22, 318
ApeKI GCWGC 1 cut(s) 272
AspA2I CCTAGG 1 cut(s) 127
AsuHPI GGTGA 1 cut(s) 214
AvrII CCTAGG 1 cut(s) 127
BbvI GCAGC 1 cut(s) 259
BccI CCATC 1 cut(s) 170
BfaI CTAG 1 cut(s) 128
BfmI CTRYAG 2 cut(s) 83, 273
BisI GCNGC 1 cut(s) 273
BlnI CCTAGG 1 cut(s) 127
BlsI GCNGC 1 cut(s) 274
BsaJI CCNNGG 1 cut(s) 127
Bsc4I CCNNNNNNNGG 1 cut(s) 11
Bse1I ACTGG 1 cut(s) 297
BseDI CCNNGG 1 cut(s) 127
BseGI GGATG 1 cut(s) 181
BseLI CCNNNNNNNGG 1 cut(s) 11
BseMII CTCAG 1 cut(s) 270
BseNI ACTGG 1 cut(s) 297
BseXI GCAGC 1 cut(s) 259
BslI CCNNNNNNNGG 1 cut(s) 11
BsmI GAATGC 1 cut(s) 284
Bsp143I GATC 1 cut(s) 307
BspCNI CTCAG 1 cut(s) 269
BspMAI CTGCAG 2 cut(s) 87, 277
BsrI ACTGG 1 cut(s) 297
BssECI CCNNGG 1 cut(s) 127
BssMI GATC 1 cut(s) 307
BssT1I CCWWGG 1 cut(s) 127
BstAPI GCANNNNNTGC 1 cut(s) 281
BstDEI CTNAG 1 cut(s) 256
BstF5I GGATG 1 cut(s) 181
BstKTI GATC 1 cut(s) 310
BstMBI GATC 1 cut(s) 307
BstMWI GCNNNNNNNGC 1 cut(s) 281
BstSFI CTRYAG 2 cut(s) 83, 273
BstV1I GCAGC 1 cut(s) 259
BtsCI GGATG 1 cut(s) 181
BtsI GCAGTG 1 cut(s) 282
BtsIMutI CAGTG 1 cut(s) 282
CviAII CATG 3 cut(s) 77, 172, 198
CviJI RGCY 4 cut(s) 22, 61, 272, 318
CviKI_1 RGCY 4 cut(s) 22, 61, 272, 318
DdeI CTNAG 1 cut(s) 256
DpnI GATC 1 cut(s) 309
DpnII GATC 1 cut(s) 307
Eco130I CCWWGG 1 cut(s) 127
EcoT14I CCWWGG 1 cut(s) 127
ErhI CCWWGG 1 cut(s) 127
FaeI CATG 3 cut(s) 80, 175, 201
FaiI YATR 8 cut(s) 9, 64, 66, 78, 152, 154, 173, 199
FatI CATG 3 cut(s) 76, 171, 197
FblI GTMKAC 1 cut(s) 261
Fnu4HI GCNGC 1 cut(s) 273
FokI GGATG 1 cut(s) 188
Fsp4HI GCNGC 1 cut(s) 273
FspBI CTAG 1 cut(s) 128
GluI GCNGC 1 cut(s) 273
Hin1II CATG 3 cut(s) 80, 175, 201
HinfI GANTC 2 cut(s) 41, 344
HphI GGTGA 1 cut(s) 214
Hpy166II GTNNAC 2 cut(s) 262, 303
Hpy188III TCNNGA 1 cut(s) 348
Hpy8I GTNNAC 2 cut(s) 262, 303
HpyCH4IV ACGT 1 cut(s) 148
HpyCH4V TGCA 3 cut(s) 85, 275, 284
HpyF10VI GCNNNNNNNGC 1 cut(s) 281
HpyF3I CTNAG 1 cut(s) 256
HpySE526I ACGT 1 cut(s) 148
Hsp92II CATG 3 cut(s) 80, 175, 201
Kzo9I GATC 1 cut(s) 307
LpnPI CCDG 3 cut(s) 71, 153, 278
Lsp1109I GCAGC 1 cut(s) 259
MaeI CTAG 1 cut(s) 128
MaeII ACGT 1 cut(s) 148
MaeIII GTNAC 1 cut(s) 72
MalI GATC 1 cut(s) 309
MboI GATC 1 cut(s) 307
MboII GAAGA 2 cut(s) 46, 96
MluCI AATT 3 cut(s) 100, 184, 244
MmeI TCCRAC 2 cut(s) 18, 313
MnlI CCTC 4 cut(s) 15, 235, 262, 263
Mva1269I GAATGC 1 cut(s) 284
MwoI GCNNNNNNNGC 1 cut(s) 281
NdeII GATC 1 cut(s) 307
NlaIII CATG 3 cut(s) 80, 175, 201
PctI GAATGC 1 cut(s) 284
PfeI GAWTC 2 cut(s) 41, 344
PkrI GCNGC 1 cut(s) 274
PstI CTGCAG 2 cut(s) 87, 277
SatI GCNGC 1 cut(s) 273
Sau3AI GATC 1 cut(s) 307
SetI ASST 6 cut(s) 24, 72, 133, 151, 227, 320
SfcI CTRYAG 2 cut(s) 83, 273
Sse9I AATT 3 cut(s) 100, 184, 244
SspI AATATT 1 cut(s) 93
SspMI CTAG 1 cut(s) 128
StyI CCWWGG 1 cut(s) 127
TaiI ACGT 1 cut(s) 151
TaqI TCGA 3 cut(s) 181, 231, 267
TasI AATT 3 cut(s) 100, 184, 244
TfiI GAWTC 2 cut(s) 41, 344
TscAI CASTG 1 cut(s) 282
TseI GCWGC 1 cut(s) 272
TspDTI ATGAA 2 cut(s) 93, 159
TspGWI ACGGA 1 cut(s) 86
TspRI CASTG 1 cut(s) 282
XmaJI CCTAGG 1 cut(s) 127
XmiI GTMKAC 1 cut(s) 261
XspI CTAG 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.