pycom05g01010

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0000563
Physical Location & Seq
Forward (+)
1228339 .. 1229220
882 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g01010.1

Sequence Viewer

Length: 882 bp
ATGGTGCCATTCGGAACAAGATATATGATTGTGGGTTCCAACCCTTACATTGTTGGGGGTCAGTTCGGTTGCCCGCATCCTCTTTTAGGGTATGATTATTGGCCCAACTTTGATGTTATTGCATGTGATCCTCCCACTGATGATCCATGCAAGAGTAATCTACCCATGTTGTCTGGTCCTAAATTTTATCCCTTTGTTATTACCCTCGGGAACAAAATTTATGTTTTGTCCCTACAGTACAGGGGATATATCACAGAAACATGGCCAGCCCTTTTTGAGGTTTATAATCCCGAATCTGGGAAGTGGAAAATTCTCCCGAACCCCCCCTTTGTCGTTGGTAAGACTGTCACCAGTCCTGCTGCCCATCACTACTATGCTTTGGGACACAAGCTCGTGGTGACAAACACATGGTCAGTTGAGTCATACGTGTTCGACACTCTTGAAGAGAAATGGGAGCCATGGGACAGTCGGGAGGATGCATTTGAAATCGCATATAAACCCCATCTTACTTTAGCACGATTCAAGGACTTTTTGGTTGCTGTCCATCAAGGGGATTTTGGTGATGTTCTTACTTATCGGTTGGATTCAGATGGCATCCCTCGACCGGGTCGGAATCTAGTTGAGCTTGAGAACATATTCCTTCCTCCTCTGGACGGTTGCTTTCCCTTCATCACTGAAATCAACGACGCTGGCCTTATGTGCATTGTGTGTTCTTCTGGCATTGAACAATCGGAATTGTGGCGTTTACGTGTAGTGGTGTTCCAAGTGTCCATCTCAGGCCATCTTGACAATCAATTCCTTTGTGCTGATATTAAGGCCAAAGGAACTTACTACTTCTGTCAACGTATTGATCCAATCATCTTCCCACCAGTTATCACGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

294

Amino Acids

33.25

Weight (kDa)

5.12

Isoelectric Point (pI)

38.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Kelch_FKB95 PF25210 5 - 157 2e-06 FKB95, Kelch-repeats domain
DUF1668 PF07893 53 - 152 2.5e-08 Protein of unknown function (DUF1668)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 285
AccB1I GGYRCC 1 cut(s) 4
AciI CCGC 1 cut(s) 74
AclWI GGATC 3 cut(s) 122, 137, 845
AcoI YGGCCR 1 cut(s) 263
AcsI RAATTY 3 cut(s) 182, 216, 309
AfaI GTAC 1 cut(s) 239
AfiI CCNNNNNNNGG 8 cut(s) 86, 277, 296, 297, 550, 604, 605, 653
AflIII ACRYGT 2 cut(s) 426, 748
AgsI TTSAA 4 cut(s) 443, 485, 523, 725
AluBI AGCT 2 cut(s) 391, 625
AluI AGCT 2 cut(s) 391, 625
AlwI GGATC 3 cut(s) 122, 137, 845
Ama87I CYCGRG 1 cut(s) 206
AoxI GGCC 5 cut(s) 101, 263, 691, 778, 816
ApeKI GCWGC 1 cut(s) 359
ApoI RAATTY 3 cut(s) 182, 216, 309
ArsI GACNNNNNNTTYG 2 cut(s) 395, 427
Asp700I GAANNNNTTC 1 cut(s) 635
AspS9I GGNCC 2 cut(s) 102, 176
AsuC2I CCSGG 1 cut(s) 606
AsuHPI GGTGA 3 cut(s) 340, 409, 572
AvaI CYCGRG 1 cut(s) 206
AvaII GGWCC 1 cut(s) 176
BalI TGGCCA 1 cut(s) 265
BanI GGYRCC 1 cut(s) 4
BauI CACGAG 1 cut(s) 392
BbvI GCAGC 1 cut(s) 346
BccI CCATC 6 cut(s) 372, 510, 552, 584, 779, 789
BcnI CCSGG 1 cut(s) 606
BfaI CTAG 1 cut(s) 617
BfmI CTRYAG 1 cut(s) 233
BisI GCNGC 1 cut(s) 360
BlsI GCNGC 1 cut(s) 361
Bme1390I CCNGG 1 cut(s) 606
Bme18I GGWCC 1 cut(s) 176
BmeT110I CYCGRG 1 cut(s) 206
BmgT120I GGNCC 2 cut(s) 102, 176
BmiI GGNNCC 3 cut(s) 6, 37, 456
BmrFI CCNGG 1 cut(s) 606
BmsI GCATC 3 cut(s) 85, 466, 603
BpuEI CTTGAG 1 cut(s) 647
BpuMI CCSGG 1 cut(s) 606
BsaAI YACGTR 3 cut(s) 427, 749, 879
BsaJI CCNNGG 2 cut(s) 205, 458
Bsc4I CCNNNNNNNGG 8 cut(s) 86, 277, 296, 297, 550, 604, 605, 653
Bse1I ACTGG 2 cut(s) 351, 869
BseDI CCNNGG 2 cut(s) 205, 458
BseGI GGATG 3 cut(s) 76, 481, 594
BseLI CCNNNNNNNGG 8 cut(s) 86, 277, 296, 297, 550, 604, 605, 653
BseMII CTCAG 1 cut(s) 789
BseNI ACTGG 2 cut(s) 351, 869
BseRI GAGGAG 1 cut(s) 636
BseXI GCAGC 1 cut(s) 346
Bsh1285I CGRYCG 1 cut(s) 605
BshFI GGCC 5 cut(s) 103, 265, 693, 780, 818
BshNI GGYRCC 1 cut(s) 4
BsiEI CGRYCG 1 cut(s) 605
BsiHKCI CYCGRG 1 cut(s) 206
BsiSI CCGG 1 cut(s) 605
BslFI GGGAC 3 cut(s) 214, 396, 476
BslI CCNNNNNNNGG 8 cut(s) 86, 277, 296, 297, 550, 604, 605, 653
BsmFI GGGAC 3 cut(s) 214, 396, 476
BsnI GGCC 5 cut(s) 103, 265, 693, 780, 818
BsoBI CYCGRG 1 cut(s) 206
Bsp143I GATC 3 cut(s) 127, 142, 850
Bsp19I CCATGG 1 cut(s) 458
BspACI CCGC 1 cut(s) 74
BspANI GGCC 5 cut(s) 103, 265, 693, 780, 818
BspCNI CTCAG 1 cut(s) 788
BspLI GGNNCC 3 cut(s) 6, 37, 456
BspPI GGATC 3 cut(s) 122, 137, 845
BspT107I GGYRCC 1 cut(s) 4
BsrI ACTGG 2 cut(s) 351, 869
BssECI CCNNGG 2 cut(s) 205, 458
BssMI GATC 3 cut(s) 127, 142, 850
BssSI CACGAG 1 cut(s) 392
BssT1I CCWWGG 1 cut(s) 458
Bst2BI CACGAG 1 cut(s) 392
Bst4CI ACNGT 4 cut(s) 237, 346, 467, 656
Bst6I CTCTTC 1 cut(s) 438
BstBAI YACGTR 3 cut(s) 427, 749, 879
BstC8I GCNNGC 3 cut(s) 74, 267, 691
BstDEI CTNAG 1 cut(s) 775
BstDSI CCRYGG 1 cut(s) 458
BstENI CCTNNNNNAGG 2 cut(s) 84, 275
BstF5I GGATG 3 cut(s) 76, 481, 594
BstKTI GATC 3 cut(s) 130, 145, 853
BstMBI GATC 3 cut(s) 127, 142, 850
BstMCI CGRYCG 1 cut(s) 605
BstMWI GCNNNNNNNGC 1 cut(s) 699
BstNSI RCATGY 1 cut(s) 126
BstSCI CCNGG 1 cut(s) 604
BstSFI CTRYAG 1 cut(s) 233
BstV1I GCAGC 1 cut(s) 346
BsuRI GGCC 5 cut(s) 103, 265, 693, 780, 818
BtgI CCRYGG 1 cut(s) 458
BtsCI GGATG 3 cut(s) 76, 481, 594
BtsIMutI CAGTG 2 cut(s) 135, 672
Cac8I GCNNGC 3 cut(s) 74, 267, 691
Cfr13I GGNCC 2 cut(s) 102, 176
CseI GACGC 1 cut(s) 695
Csp6I GTAC 1 cut(s) 238
CviAII CATG 6 cut(s) 123, 147, 166, 261, 408, 459
CviJI RGCY 9 cut(s) 103, 265, 269, 391, 457, 625, 693, 780, 818
CviKI_1 RGCY 9 cut(s) 103, 265, 269, 391, 457, 625, 693, 780, 818
CviQI GTAC 1 cut(s) 238
DdeI CTNAG 1 cut(s) 775
DpnI GATC 3 cut(s) 129, 144, 852
DpnII GATC 3 cut(s) 127, 142, 850
EaeI YGGCCR 1 cut(s) 263
Eam1104I CTCTTC 1 cut(s) 438
EarI CTCTTC 1 cut(s) 438
Eco130I CCWWGG 1 cut(s) 458
Eco47I GGWCC 1 cut(s) 176
Eco88I CYCGRG 1 cut(s) 206
EcoNI CCTNNNNNAGG 2 cut(s) 84, 275
EcoT14I CCWWGG 1 cut(s) 458
EcoT22I ATGCAT 1 cut(s) 481
ErhI CCWWGG 1 cut(s) 458
FaeI CATG 6 cut(s) 126, 150, 169, 264, 411, 462
FaqI GGGAC 3 cut(s) 214, 396, 476
FatI CATG 6 cut(s) 122, 146, 165, 260, 407, 458
FauI CCCGC 1 cut(s) 81
Fnu4HI GCNGC 1 cut(s) 360
FokI GGATG 3 cut(s) 63, 488, 581
Fsp4HI GCNGC 1 cut(s) 360
FspBI CTAG 1 cut(s) 617
GluI GCNGC 1 cut(s) 360
HaeIII GGCC 5 cut(s) 103, 265, 693, 780, 818
HapII CCGG 1 cut(s) 605
HgaI GACGC 1 cut(s) 695
Hin1II CATG 6 cut(s) 126, 150, 169, 264, 411, 462
HincII GTYRAC 1 cut(s) 842
HindII GTYRAC 1 cut(s) 842
HinfI GANTC 5 cut(s) 293, 419, 519, 584, 613
HpaII CCGG 1 cut(s) 605
HphI GGTGA 3 cut(s) 340, 409, 572
Hpy166II GTNNAC 2 cut(s) 746, 842
Hpy188I TCNGA 4 cut(s) 14, 589, 612, 733
Hpy188III TCNNGA 7 cut(s) 208, 290, 316, 440, 470, 650, 785
Hpy8I GTNNAC 2 cut(s) 746, 842
Hpy99I CGWCG 1 cut(s) 689
HpyAV CCTTC 2 cut(s) 650, 676
HpyCH4III ACNGT 4 cut(s) 237, 346, 467, 656
HpyCH4IV ACGT 4 cut(s) 426, 748, 844, 878
HpyCH4V TGCA 4 cut(s) 122, 150, 479, 702
HpyF10VI GCNNNNNNNGC 1 cut(s) 699
HpyF3I CTNAG 1 cut(s) 775
HpySE526I ACGT 4 cut(s) 426, 748, 844, 878
Hsp92II CATG 6 cut(s) 126, 150, 169, 264, 411, 462
Kzo9I GATC 3 cut(s) 127, 142, 850
LmnI GCTCC 1 cut(s) 454
Lsp1109I GCAGC 1 cut(s) 346
LweI GCATC 3 cut(s) 85, 466, 603
MaeI CTAG 1 cut(s) 617
MaeII ACGT 4 cut(s) 426, 748, 844, 878
MaeIII GTNAC 2 cut(s) 346, 397
MalI GATC 3 cut(s) 129, 144, 852
MboI GATC 3 cut(s) 127, 142, 850
MboII GAAGA 3 cut(s) 455, 705, 853
MlsI TGGCCA 1 cut(s) 265
MluCI AATT 5 cut(s) 182, 216, 309, 734, 794
MluNI TGGCCA 1 cut(s) 265
MlyI GAGTC 1 cut(s) 428
MmeI TCCRAC 3 cut(s) 63, 561, 590
MnlI CCTC 8 cut(s) 90, 141, 215, 271, 466, 609, 654, 657
Mox20I TGGCCA 1 cut(s) 265
Mph1103I ATGCAT 1 cut(s) 481
MroXI GAANNNNTTC 1 cut(s) 635
MscI TGGCCA 1 cut(s) 265
MseI TTAA 1 cut(s) 813
MslI CAYNNNNRTG 1 cut(s) 372
Msp20I TGGCCA 1 cut(s) 265
MspI CCGG 1 cut(s) 605
MspR9I CCNGG 1 cut(s) 606
MwoI GCNNNNNNNGC 1 cut(s) 699
NciI CCSGG 1 cut(s) 606
NcoI CCATGG 1 cut(s) 458
NdeII GATC 3 cut(s) 127, 142, 850
NlaIII CATG 6 cut(s) 126, 150, 169, 264, 411, 462
NlaIV GGNNCC 3 cut(s) 6, 37, 456
NmuCI GTSAC 2 cut(s) 346, 397
NsiI ATGCAT 1 cut(s) 481
NspI RCATGY 1 cut(s) 126
PdmI GAANNNNTTC 1 cut(s) 635
PfeI GAWTC 4 cut(s) 293, 519, 584, 613
PflFI GACNNNGTC 1 cut(s) 606
PkrI GCNGC 1 cut(s) 361
PleI GAGTC 1 cut(s) 427
PpsI GAGTC 1 cut(s) 427
Ppu21I YACGTR 3 cut(s) 427, 749, 879
PsiI TTATAA 1 cut(s) 285
PspN4I GGNNCC 3 cut(s) 6, 37, 456
PspPI GGNCC 2 cut(s) 102, 176
PsyI GACNNNGTC 1 cut(s) 606
RsaI GTAC 1 cut(s) 239
RsaNI GTAC 1 cut(s) 238
RseI CAYNNNNRTG 1 cut(s) 372
SaqAI TTAA 1 cut(s) 813
SatI GCNGC 1 cut(s) 360
Sau3AI GATC 3 cut(s) 127, 142, 850
Sau96I GGNCC 2 cut(s) 102, 176
SchI GAGTC 1 cut(s) 428
ScrFI CCNGG 1 cut(s) 606
SetI ASST 7 cut(s) 282, 393, 429, 627, 751, 847, 881
SfaNI GCATC 3 cut(s) 85, 466, 603
SfcI CTRYAG 1 cut(s) 233
SinI GGWCC 1 cut(s) 176
SmiMI CAYNNNNRTG 1 cut(s) 372
SmlI CTYRAG 1 cut(s) 626
SmoI CTYRAG 1 cut(s) 626
Sse9I AATT 5 cut(s) 182, 216, 309, 734, 794
SsiI CCGC 1 cut(s) 74
SspMI CTAG 1 cut(s) 617
StyD4I CCNGG 1 cut(s) 604
StyI CCWWGG 1 cut(s) 458
TaaI ACNGT 4 cut(s) 237, 346, 467, 656
TaiI ACGT 4 cut(s) 429, 751, 847, 881
TaqI TCGA 2 cut(s) 432, 601
TasI AATT 5 cut(s) 182, 216, 309, 734, 794
TatI WGTACW 1 cut(s) 237
TfiI GAWTC 4 cut(s) 293, 519, 584, 613
Tru1I TTAA 1 cut(s) 813
Tru9I TTAA 1 cut(s) 813
TscAI CASTG 2 cut(s) 142, 679
TseFI GTSAC 2 cut(s) 346, 397
TseI GCWGC 1 cut(s) 359
Tsp45I GTSAC 2 cut(s) 346, 397
TspDTI ATGAA 1 cut(s) 658
TspRI CASTG 2 cut(s) 142, 679
Tth111I GACNNNGTC 1 cut(s) 606
VpaK11BI GGWCC 1 cut(s) 176
XagI CCTNNNNNAGG 2 cut(s) 84, 275
XapI RAATTY 3 cut(s) 182, 216, 309
XceI RCATGY 1 cut(s) 126
XmnI GAANNNNTTC 1 cut(s) 635
XspI CTAG 1 cut(s) 617
Zsp2I ATGCAT 1 cut(s) 481
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.