MD15G1041700.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0000563
Physical Location & Seq
Forward (+)
2917388 .. 2924520
7133 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1041700.v1.1.491

Sequence Viewer

Length: 150 bp
ATGGCACTTGCTTTGACTGTGAACAGTGTGATATTCATCAGGTATGATGATCTGAGCATGGATGATACCGCGGCTGATGCAAGTTTAACGAACTCAACTCTTTTTGGCTTGGACAGGCATGGGCAAGCATGCCGCGGAGTTTGTCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

50

Amino Acids

5.29

Weight (kDa)

4.72

Isoelectric Point (pI)

21.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 71, 135
AciI CCGC 4 cut(s) 69, 71, 133, 135
BisI GCNGC 2 cut(s) 72, 133
BlsI GCNGC 2 cut(s) 73, 134
BmsI GCATC 1 cut(s) 67
BsaBI GATNNNNATC 1 cut(s) 35
BsaJI CCNNGG 2 cut(s) 69, 133
Bse8I GATNNNNATC 1 cut(s) 35
BseDI CCNNGG 2 cut(s) 69, 133
BseGI GGATG 1 cut(s) 67
BseJI GATNNNNATC 1 cut(s) 35
BseMII CTCAG 1 cut(s) 44
Bsh1236I CGCG 2 cut(s) 71, 135
Bsp143I GATC 1 cut(s) 49
BspACI CCGC 4 cut(s) 69, 71, 133, 135
BspCNI CTCAG 1 cut(s) 45
BspFNI CGCG 2 cut(s) 71, 135
BssECI CCNNGG 2 cut(s) 69, 133
BssMI GATC 1 cut(s) 49
Bst4CI ACNGT 2 cut(s) 19, 26
BstC8I GCNNGC 2 cut(s) 126, 130
BstDEI CTNAG 1 cut(s) 53
BstDSI CCRYGG 2 cut(s) 69, 133
BstF5I GGATG 1 cut(s) 67
BstFNI CGCG 2 cut(s) 71, 135
BstKTI GATC 1 cut(s) 52
BstMBI GATC 1 cut(s) 49
BstMWI GCNNNNNNNGC 1 cut(s) 77
BstNSI RCATGY 1 cut(s) 132
BstUI CGCG 2 cut(s) 71, 135
BtgI CCRYGG 2 cut(s) 69, 133
BtsCI GGATG 1 cut(s) 67
BtsIMutI CAGTG 2 cut(s) 31, 145
Cac8I GCNNGC 2 cut(s) 126, 130
Cfr42I CCGCGG 2 cut(s) 72, 136
CviAII CATG 3 cut(s) 58, 119, 129
CviJI RGCY 2 cut(s) 74, 108
CviKI_1 RGCY 2 cut(s) 74, 108
DdeI CTNAG 1 cut(s) 53
DpnI GATC 1 cut(s) 51
DpnII GATC 1 cut(s) 49
FaeI CATG 3 cut(s) 61, 122, 132
FaiI YATR 4 cut(s) 45, 59, 120, 130
FatI CATG 3 cut(s) 57, 118, 128
Fnu4HI GCNGC 2 cut(s) 72, 133
FokI GGATG 1 cut(s) 74
Fsp4HI GCNGC 2 cut(s) 72, 133
GluI GCNGC 2 cut(s) 72, 133
Hin1II CATG 3 cut(s) 61, 122, 132
Hpy166II GTNNAC 1 cut(s) 22
Hpy188I TCNGA 1 cut(s) 54
Hpy8I GTNNAC 1 cut(s) 22
HpyCH4III ACNGT 2 cut(s) 19, 26
HpyCH4V TGCA 1 cut(s) 80
HpyF10VI GCNNNNNNNGC 1 cut(s) 77
HpyF3I CTNAG 1 cut(s) 53
Hsp92II CATG 3 cut(s) 61, 122, 132
KspI CCGCGG 2 cut(s) 72, 136
Kzo9I GATC 1 cut(s) 49
LpnPI CCDG 2 cut(s) 25, 100
LweI GCATC 1 cut(s) 67
MaeIII GTNAC 1 cut(s) 143
MalI GATC 1 cut(s) 51
MboI GATC 1 cut(s) 49
MseI TTAA 1 cut(s) 86
MspA1I CMGCKG 2 cut(s) 71, 135
MvnI CGCG 2 cut(s) 71, 135
MwoI GCNNNNNNNGC 1 cut(s) 77
NdeII GATC 1 cut(s) 49
NlaIII CATG 3 cut(s) 61, 122, 132
NmuCI GTSAC 1 cut(s) 143
NspI RCATGY 1 cut(s) 132
PaeI GCATGC 1 cut(s) 132
PkrI GCNGC 2 cut(s) 73, 134
SacII CCGCGG 2 cut(s) 72, 136
SaqAI TTAA 1 cut(s) 86
SatI GCNGC 2 cut(s) 72, 133
Sau3AI GATC 1 cut(s) 49
SetI ASST 1 cut(s) 44
SfaNI GCATC 1 cut(s) 67
Sfr303I CCGCGG 2 cut(s) 72, 136
SgrBI CCGCGG 2 cut(s) 72, 136
SphI GCATGC 1 cut(s) 132
SsiI CCGC 4 cut(s) 69, 71, 133, 135
TaaI ACNGT 2 cut(s) 19, 26
TauI GCSGC 2 cut(s) 74, 135
Tru1I TTAA 1 cut(s) 86
Tru9I TTAA 1 cut(s) 86
TscAI CASTG 1 cut(s) 31
TseFI GTSAC 1 cut(s) 143
Tsp45I GTSAC 1 cut(s) 143
TspDTI ATGAA 1 cut(s) 25
TspRI CASTG 1 cut(s) 31
XceI RCATGY 1 cut(s) 132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.