Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0000563

Physical Location & Seq

Genomic Coordinates Forward (+)

44801372 .. 44802070

Gene Structure 699 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG178300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGTCGATGAAGAAGGATATGTTCTTGTACTTGAATATGAACGACCGACTTTTGGGTCTAAATCTTAGAGAGTTCAGCGAAAGGTACTCTTCCAAGCCTGAGTTTGAAGTTGTTCAGGTTTTGAATTATCCGAACCGCCGCCGTCCAGGTACAAATTCCGATATCGCAAAGAAAGATTGTATGACTGTGTGTAATTCCAACTTGTATATGATGAGGGTAACTGAAAATCACGGCGCGTGTGGTAATTTTGACTTGGATGTTTATTCCTTTGATCCCACTGGGGCAGATGACCGTAAATCCATCCGTCTATGTGACAAAAGTGCCTCACCTAGATTGATGTATAGTAATCGTCCTATAGTGTTCACCCTCGATGAGAAAATCTATGTTCTGGGAGTACCAACATATTTATATACAGCACACGTTGTGATGATGTGGCGGAAGAGCCACAACTTTTTTGGGTTTTTGATCCTTTTCACGAATCCTGGAAGCCACTTCCTCATCCTCTCTTCTACAATCATGGTCCGTGTAATGTGTATTATGATGTTTCTTATGGTCACAAGCTTTTTATTCGTACATACAATCAAAGACACGTTTTTGACGCTCACCAAGAGAGATGGGAGGGTTCAGAAAGGCGCGGTGTTTACGATGAGCTTTACTTTGAATTTAATGCTATTGTACAATTTGGTGAAGGCTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006479 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016278 GO:0016279 GO:0016740 GO:0016741 GO:0018022 GO:0018023 GO:0018026 GO:0018193 GO:0018205 GO:0019538 GO:0032259 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rubis-subs-bind SET

Protein Analysis

232

Amino Acids

26.97

Weight (kDa)

9.38

Isoelectric Point (pI)

27.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000563)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g40701 FvH4_3g40701 FvH4_3g42210 FvH4_4g30821 FvH4_4g30830 FvH4_4g30861 FvH4_4g30870 FvH4_4g30880 FvH4_4g30890 FvH4_6g30071 FvH4_6g44331 FvH4_6g44332 FvH4_6g44333
malus_domestica	MD15G1041200.v1.1 MD15G1041700.v1.1 MD15G1401000.v1.1
prunus_persica	Prupe.5G008800_v2.0.a1 Prupe.5G157900_v2.0.a1
pyrus_communis	pycom05g01010 pycom15g03820 pycom15g03830 pycom15g03850 pycom15g04240
rosa_chinensis	RchiOBHm_Chr5g0075231
rosa_laevigata	RLG00000008231 RLG00000008232 RLG00000008235 RLG00000008239 RLG00000008240 RLG00000008241 RLG00000021260 RLG00000021269 RLG00000036539 RLG00000036540 RLG00000037046
rosa_multiflora	Rmu_sc0000955.1_g000047 Rmu_sc0006420.1_g000034
rosa_roxburghii	Rroxscaffold_1G00000870 Rroxscaffold_1G00000880 Rroxscaffold_1G00006320 Rroxscaffold_2G00088990 Rroxscaffold_2G00089000 Rroxscaffold_2G00089010 Rroxscaffold_2G00089100 Rroxscaffold_5G00357190 Rroxscaffold_5G00357200
rosa_rugosa	Rorug04G0118300 Rorug04G0118400 Rorug05G0437400 Rorug05G0439900
rosa_samantha	Rh2AG552900 Rh2AG553000 Rh2BG566800 Rh2CG536900 Rh2DG575800 Rh2DG575900 Rh4AG177300 Rh4AG177400 Rh4AG178100 Rh4AG178300 Rh4AG178400 Rh4AG178500 Rh4BG177100 Rh4BG177200 Rh4BG177700 Rh4CG188300 Rh4CG188700 Rh4CG188800 Rh4CG189000 Rh4CG189100 Rh5AG494400 Rh5AG497000 Rh5AG537400 Rh5BG515800 Rh5BG515900 Rh5BG516000 Rh5CG539600 Rh5CG539700 Rh5CG539800 Rh5DG528600 Rh5DG528700
rosa_wichuraiana	Rw2G045740 Rw4G014830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	54
AccII	CGCG	2 cut(s)	236, 635
AciI	CCGC	4 cut(s)	136, 139, 436, 635
AclWI	GGATC	2 cut(s)	266, 460
AcsI	RAATTY	2 cut(s)	154, 661
AdeI	CACNNNGTG	1 cut(s)	424
AfaI	GTAC	6 cut(s)	29, 86, 151, 396, 573, 677
AfiI	CCNNNNNNNGG	1 cut(s)	52
AflIII	ACRYGT	2 cut(s)	418, 588
AgsI	TTSAA	4 cut(s)	34, 107, 124, 661
AjnI	CCWGG	2 cut(s)	145, 481
AluBI	AGCT	2 cut(s)	561, 651
AluI	AGCT	2 cut(s)	561, 651
AlwI	GGATC	2 cut(s)	266, 460
ApoI	RAATTY	2 cut(s)	154, 661
Asp700I	GAANNNNTTC	1 cut(s)	111
AspLEI	GCGC	2 cut(s)	236, 635
AspS9I	GGNCC	1 cut(s)	520
AsuHPI	GGTGA	4 cut(s)	318, 355, 595, 697
AvaII	GGWCC	1 cut(s)	520
BccI	CCATC	2 cut(s)	308, 608
BceAI	ACGGC	2 cut(s)	126, 247
BciT130I	CCWGG	2 cut(s)	147, 483
BfaI	CTAG	1 cut(s)	330
BfmI	CTRYAG	1 cut(s)	354
BisI	GCNGC	1 cut(s)	139
BlsI	GCNGC	1 cut(s)	140
Bme1390I	CCNGG	2 cut(s)	147, 483
Bme18I	GGWCC	1 cut(s)	520
BmgT120I	GGNCC	1 cut(s)	520
BmrFI	CCNGG	2 cut(s)	147, 483
BmrI	ACTGGG	1 cut(s)	288
BmuI	ACTGGG	1 cut(s)	288
Bsc4I	CCNNNNNNNGG	1 cut(s)	52
Bse1I	ACTGG	1 cut(s)	283
BseBI	CCWGG	2 cut(s)	147, 483
BseGI	GGATG	3 cut(s)	262, 300, 498
BseLI	CCNNNNNNNGG	1 cut(s)	52
BseMII	CTCAG	1 cut(s)	90
BseNI	ACTGG	1 cut(s)	283
Bsh1236I	CGCG	2 cut(s)	236, 635
Bsh1285I	CGRYCG	1 cut(s)	46
BsiEI	CGRYCG	1 cut(s)	46
BslI	CCNNNNNNNGG	1 cut(s)	52
Bsp1407I	TGTACA	1 cut(s)	675
Bsp143I	GATC	2 cut(s)	271, 465
BspACI	CCGC	4 cut(s)	136, 139, 436, 635
BspCNI	CTCAG	1 cut(s)	91
BspFNI	CGCG	2 cut(s)	236, 635
BspPI	GGATC	2 cut(s)	266, 460
BspQI	GCTCTTC	1 cut(s)	434
BsrGI	TGTACA	1 cut(s)	675
BsrI	ACTGG	1 cut(s)	283
BssMI	GATC	2 cut(s)	271, 465
Bst2UI	CCWGG	2 cut(s)	147, 483
Bst4CI	ACNGT	2 cut(s)	187, 293
Bst6I	CTCTTC	3 cut(s)	94, 434, 511
BstAUI	TGTACA	1 cut(s)	675
BstDEI	CTNAG	2 cut(s)	65, 99
BstF5I	GGATG	3 cut(s)	262, 300, 498
BstFNI	CGCG	2 cut(s)	236, 635
BstHHI	GCGC	2 cut(s)	236, 635
BstKTI	GATC	2 cut(s)	274, 468
BstMBI	GATC	2 cut(s)	271, 465
BstMCI	CGRYCG	1 cut(s)	46
BstNI	CCWGG	2 cut(s)	147, 483
BstSCI	CCNGG	2 cut(s)	145, 481
BstSFI	CTRYAG	1 cut(s)	354
BstUI	CGCG	2 cut(s)	236, 635
BtsCI	GGATG	3 cut(s)	262, 300, 498
BtsIMutI	CAGTG	1 cut(s)	276
CfoI	GCGC	2 cut(s)	236, 635
Cfr13I	GGNCC	1 cut(s)	520
CseI	GACGC	1 cut(s)	607
Csp6I	GTAC	6 cut(s)	28, 85, 150, 395, 572, 676
CviAII	CATG	1 cut(s)	517
CviJI	RGCY	6 cut(s)	97, 444, 489, 561, 651, 692
CviKI_1	RGCY	6 cut(s)	97, 444, 489, 561, 651, 692
CviQI	GTAC	6 cut(s)	28, 85, 150, 395, 572, 676
DdeI	CTNAG	2 cut(s)	65, 99
DpnI	GATC	2 cut(s)	273, 467
DpnII	GATC	2 cut(s)	271, 465
DraIII	CACNNNGTG	1 cut(s)	424
DrdI	GACNNNNNNGTC	1 cut(s)	54
DseDI	GACNNNNNNGTC	1 cut(s)	54
Eam1104I	CTCTTC	3 cut(s)	94, 434, 511
EarI	CTCTTC	3 cut(s)	94, 434, 511
EciI	GGCGGA	1 cut(s)	451
Eco32I	GATATC	1 cut(s)	163
Eco47I	GGWCC	1 cut(s)	520
EcoRII	CCWGG	2 cut(s)	145, 481
EcoRV	GATATC	1 cut(s)	163
FaeI	CATG	1 cut(s)	520
FalI	AAGNNNNNCTT	2 cut(s)	73, 105
FatI	CATG	1 cut(s)	516
Fnu4HI	GCNGC	1 cut(s)	139
FokI	GGATG	3 cut(s)	269, 287, 485
Fsp4HI	GCNGC	1 cut(s)	139
FspBI	CTAG	1 cut(s)	330
GlaI	GCGC	2 cut(s)	235, 634
GluI	GCNGC	1 cut(s)	139
HgaI	GACGC	1 cut(s)	607
HhaI	GCGC	2 cut(s)	236, 635
Hin1II	CATG	1 cut(s)	520
Hin6I	GCGC	2 cut(s)	234, 633
HinP1I	GCGC	2 cut(s)	234, 633
HindIII	AAGCTT	1 cut(s)	559
HinfI	GANTC	1 cut(s)	478
HphI	GGTGA	4 cut(s)	318, 355, 595, 697
Hpy166II	GTNNAC	2 cut(s)	363, 642
Hpy188I	TCNGA	3 cut(s)	132, 160, 627
Hpy188III	TCNNGA	1 cut(s)	475
Hpy8I	GTNNAC	2 cut(s)	363, 642
HpyAV	CCTTC	2 cut(s)	7, 682
HpyCH4III	ACNGT	2 cut(s)	187, 293
HpyCH4IV	ACGT	2 cut(s)	420, 590
HpyF3I	CTNAG	2 cut(s)	65, 99
HpySE526I	ACGT	2 cut(s)	420, 590
Hsp92II	CATG	1 cut(s)	520
HspAI	GCGC	2 cut(s)	234, 633
Kzo9I	GATC	2 cut(s)	271, 465
LguI	GCTCTTC	1 cut(s)	434
LpnPI	CCDG	8 cut(s)	101, 111, 132, 159, 264, 374, 468, 495
MaeI	CTAG	1 cut(s)	330
MaeII	ACGT	2 cut(s)	420, 590
MaeIII	GTNAC	3 cut(s)	217, 311, 553
MalI	GATC	2 cut(s)	273, 467
MboI	GATC	2 cut(s)	271, 465
MboII	GAAGA	4 cut(s)	22, 81, 451, 498
MluCI	AATT	6 cut(s)	124, 154, 193, 244, 661, 679
MmeI	TCCRAC	1 cut(s)	222
MnlI	CCTC	6 cut(s)	207, 334, 377, 506, 512, 612
MroXI	GAANNNNTTC	1 cut(s)	111
MseI	TTAA	2 cut(s)	665, 697
MspR9I	CCNGG	2 cut(s)	147, 483
MvaI	CCWGG	2 cut(s)	147, 483
MvnI	CGCG	2 cut(s)	236, 635
NdeII	GATC	2 cut(s)	271, 465
NlaIII	CATG	1 cut(s)	520
NmuCI	GTSAC	2 cut(s)	311, 553
PciSI	GCTCTTC	1 cut(s)	434
PdmI	GAANNNNTTC	1 cut(s)	111
PfeI	GAWTC	1 cut(s)	478
PfoI	TCCNGGA	1 cut(s)	481
PkrI	GCNGC	1 cut(s)	140
Psp6I	CCWGG	2 cut(s)	145, 481
PspGI	CCWGG	2 cut(s)	145, 481
PspPI	GGNCC	1 cut(s)	520
RsaI	GTAC	6 cut(s)	29, 86, 151, 396, 573, 677
RsaNI	GTAC	6 cut(s)	28, 85, 150, 395, 572, 676
SapI	GCTCTTC	1 cut(s)	434
SaqAI	TTAA	2 cut(s)	665, 697
SatI	GCNGC	1 cut(s)	139
Sau3AI	GATC	2 cut(s)	271, 465
Sau96I	GGNCC	1 cut(s)	520
ScrFI	CCNGG	2 cut(s)	147, 483
SetI	ASST	8 cut(s)	86, 120, 151, 331, 423, 563, 593, 653
SfcI	CTRYAG	1 cut(s)	354
SinI	GGWCC	1 cut(s)	520
Sse9I	AATT	6 cut(s)	124, 154, 193, 244, 661, 679
SsiI	CCGC	4 cut(s)	136, 139, 436, 635
SspMI	CTAG	1 cut(s)	330
StyD4I	CCNGG	2 cut(s)	145, 481
TaaI	ACNGT	2 cut(s)	187, 293
TaiI	ACGT	2 cut(s)	423, 593
TaqI	TCGA	2 cut(s)	5, 369
TaqII	GACCGA	1 cut(s)	60
TasI	AATT	6 cut(s)	124, 154, 193, 244, 661, 679
TatI	WGTACW	2 cut(s)	27, 675
TauI	GCSGC	1 cut(s)	141
TfiI	GAWTC	1 cut(s)	478
Tru1I	TTAA	2 cut(s)	665, 697
Tru9I	TTAA	2 cut(s)	665, 697
TscAI	CASTG	1 cut(s)	283
TseFI	GTSAC	2 cut(s)	311, 553
Tsp45I	GTSAC	2 cut(s)	311, 553
TspDTI	ATGAA	2 cut(s)	23, 53
TspGWI	ACGGA	2 cut(s)	293, 512
TspRI	CASTG	1 cut(s)	283
VpaK11BI	GGWCC	1 cut(s)	520
XapI	RAATTY	2 cut(s)	154, 661
XcmI	CCANNNNNNNNNTGG	1 cut(s)	452
XmnI	GAANNNNTTC	1 cut(s)	111
XspI	CTAG	1 cut(s)	330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.