Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0000563

Physical Location & Seq

Genomic Coordinates Forward (+)

71418240 .. 71419268

Gene Structure 1029 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG536900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGTGTACCTCCGTCTCCTCAAAACAGCCCAACAACAAAGAGTGGTTTTTGTACTTGAATATGCGCAATCGAGTATGCCGTCTAAACATTAGGGAATTCTGCAAAAGGAGGCCAAAGTGTGAACTTGTGCATGATTATTATCCAGGCTGGCCTCGTAGGACAATTCCCACCTTGATGAAACCAGTAGTTGTTGGTTCCAAAGTTTATATGTGGGGTGGTATATGGAACCCCAATGTATATTCATCGAACCCCAATGTATACTCCTTTGATCCAGCTACGAGTCCACCCTTCCGTCTCTGCGAGGGTCTGATTTCCAGATTGGTTCCACCCAAGATTGATTTCCCTTACATTATAGTGTTCAGCCTTGAGGAGAAAATCTATGTACTTGAAGAAGATCTATCCCATTTTAGGGTTTTTGATACGGTTCACGAATCCTGGAAAGACCTTCCTCACCCCCCTTATTTGCCTAATACTGATCCCCGAGTGTCTGACTACTGCGTTTGCAGCCACATACTCTATATCAGTACCGGACCAGACATTTCATTCATTTTTGACACTCTTGAAGAGAAATGGGAGGATGCGAAGACAATCCATAATGGTGTTACAGAGAGCTTCTTGGCTTTCACAGAATTTGAGGGATTTTTAATTGCCGTGACATCGTATATGAATAAGGTCGTTGCTTATAAGTTGGATTCAAATGGAATCCCCAACCCTGAGTCGTATCAAGTGCTACGTGAGATATCTTCTACAGGAGAGATGGCTTTCTTGGGTAAATGTGATGGTGGCCGACTGTGGTTGGTGAATTGTATGAAGGATGACTCTTATAACCGTATGCATAATGCCACACAGGTAATAGTGTTTCAAGCTTCCATCTCAACAAAACTTGATGGCAATCAAGCTCTCTCTGTAGAAATCGAGGCTCGAAAATTTCTCGATTTTGAACCTTCCAATTATTGCTCGTCAGCTTTCACTATGTGCCATGATCTGGGGCAAGCTCGATCCGCACTGAGCAAGAAAAAAAAGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006479 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016278 GO:0016279 GO:0016740 GO:0016741 GO:0018022 GO:0018023 GO:0018026 GO:0018193 GO:0018205 GO:0019538 GO:0032259 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rubis-subs-bind SET

Protein Analysis

342

Amino Acids

39.36

Weight (kDa)

6.75

Isoelectric Point (pI)

47.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Kelch_FKB95	PF25210	60 - 248	1.4e-06	FKB95, Kelch-repeats domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000563)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g40701 FvH4_3g40701 FvH4_3g42210 FvH4_4g30821 FvH4_4g30830 FvH4_4g30861 FvH4_4g30870 FvH4_4g30880 FvH4_4g30890 FvH4_6g30071 FvH4_6g44331 FvH4_6g44332 FvH4_6g44333
malus_domestica	MD15G1041200.v1.1 MD15G1041700.v1.1 MD15G1401000.v1.1
prunus_persica	Prupe.5G008800_v2.0.a1 Prupe.5G157900_v2.0.a1
pyrus_communis	pycom05g01010 pycom15g03820 pycom15g03830 pycom15g03850 pycom15g04240
rosa_chinensis	RchiOBHm_Chr5g0075231
rosa_laevigata	RLG00000008231 RLG00000008232 RLG00000008235 RLG00000008239 RLG00000008240 RLG00000008241 RLG00000021260 RLG00000021269 RLG00000036539 RLG00000036540 RLG00000037046
rosa_multiflora	Rmu_sc0000955.1_g000047 Rmu_sc0006420.1_g000034
rosa_roxburghii	Rroxscaffold_1G00000870 Rroxscaffold_1G00000880 Rroxscaffold_1G00006320 Rroxscaffold_2G00088990 Rroxscaffold_2G00089000 Rroxscaffold_2G00089010 Rroxscaffold_2G00089100 Rroxscaffold_5G00357190 Rroxscaffold_5G00357200
rosa_rugosa	Rorug04G0118300 Rorug04G0118400 Rorug05G0437400 Rorug05G0439900
rosa_samantha	Rh2AG552900 Rh2AG553000 Rh2BG566800 Rh2CG536900 Rh2DG575800 Rh2DG575900 Rh4AG177300 Rh4AG177400 Rh4AG178100 Rh4AG178300 Rh4AG178400 Rh4AG178500 Rh4BG177100 Rh4BG177200 Rh4BG177700 Rh4CG188300 Rh4CG188700 Rh4CG188800 Rh4CG189000 Rh4CG189100 Rh5AG494400 Rh5AG497000 Rh5AG537400 Rh5BG515800 Rh5BG515900 Rh5BG516000 Rh5CG539600 Rh5CG539700 Rh5CG539800 Rh5DG528600 Rh5DG528700
rosa_wichuraiana	Rw2G045740 Rw4G014830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	684, 825
Acc16I	TGCGCA	1 cut(s)	65
AccB7I	CCANNNNNTGG	1 cut(s)	985
AccI	GTMKAC	1 cut(s)	258
AciI	CCGC	1 cut(s)	1002
AclWI	GGATC	3 cut(s)	263, 470, 993
AcoI	YGGCCR	1 cut(s)	784
AcsI	RAATTY	3 cut(s)	95, 629, 926
AdeI	CACNNNGTG	1 cut(s)	975
AfaI	GTAC	4 cut(s)	7, 53, 384, 526
AfiI	CCNNNNNNNGG	3 cut(s)	408, 409, 985
AgsI	TTSAA	6 cut(s)	58, 389, 563, 696, 863, 941
AjnI	CCWGG	2 cut(s)	142, 434
AjuI	GAANNNNNNNTTGG	2 cut(s)	323, 355
AluBI	AGCT	6 cut(s)	275, 612, 866, 899, 965, 995
AluI	AGCT	6 cut(s)	275, 612, 866, 899, 965, 995
Alw26I	GTCTC	2 cut(s)	19, 299
AlwI	GGATC	3 cut(s)	263, 470, 993
Ama87I	CYCGRG	1 cut(s)	480
AoxI	GGCC	3 cut(s)	110, 149, 784
ApeKI	GCWGC	1 cut(s)	504
ApoI	RAATTY	3 cut(s)	95, 629, 926
AspLEI	GCGC	1 cut(s)	66
AspS9I	GGNCC	1 cut(s)	530
AsuHPI	GGTGA	2 cut(s)	443, 811
AvaI	CYCGRG	1 cut(s)	480
AvaII	GGWCC	1 cut(s)	530
BbsI	GAAGAC	1 cut(s)	590
BbvI	GCAGC	1 cut(s)	516
BccI	CCATC	4 cut(s)	751, 773, 878, 881
BceAI	ACGGC	2 cut(s)	63, 635
BciT130I	CCWGG	2 cut(s)	144, 436
BcoDI	GTCTC	2 cut(s)	19, 299
BfmI	CTRYAG	2 cut(s)	747, 906
BglII	AGATCT	1 cut(s)	394
BisI	GCNGC	1 cut(s)	505
BlsI	GCNGC	1 cut(s)	506
Bme1390I	CCNGG	2 cut(s)	144, 436
Bme18I	GGWCC	1 cut(s)	530
BmeT110I	CYCGRG	1 cut(s)	480
BmgT120I	GGNCC	1 cut(s)	530
BmiI	GGNNCC	3 cut(s)	196, 227, 324
BmrFI	CCNGG	2 cut(s)	144, 436
BmsI	GCATC	1 cut(s)	568
BpiI	GAAGAC	1 cut(s)	590
BpuEI	CTTGAG	1 cut(s)	386
BsaAI	YACGTR	1 cut(s)	734
BsaBI	GATNNNNATC	2 cut(s)	138, 891
BsaWI	WCCGGW	1 cut(s)	527
Bsc4I	CCNNNNNNNGG	3 cut(s)	408, 409, 985
Bse1I	ACTGG	1 cut(s)	182
Bse8I	GATNNNNATC	2 cut(s)	138, 891
BseBI	CCWGG	2 cut(s)	144, 436
BseGI	GGATG	2 cut(s)	583, 820
BseJI	GATNNNNATC	2 cut(s)	138, 891
BseLI	CCNNNNNNNGG	3 cut(s)	408, 409, 985
BseMII	CTCAG	2 cut(s)	705, 998
BseNI	ACTGG	1 cut(s)	182
BseRI	GAGGAG	2 cut(s)	7, 383
BseXI	GCAGC	1 cut(s)	516
BshFI	GGCC	3 cut(s)	112, 151, 786
BsiHKCI	CYCGRG	1 cut(s)	480
BsiSI	CCGG	1 cut(s)	528
BslI	CCNNNNNNNGG	3 cut(s)	408, 409, 985
BsmAI	GTCTC	2 cut(s)	19, 299
BsmBI	CGTCTC	2 cut(s)	19, 299
BsnI	GGCC	3 cut(s)	112, 151, 786
BsoBI	CYCGRG	1 cut(s)	480
Bsp143I	GATC	5 cut(s)	268, 394, 475, 982, 998
BspACI	CCGC	1 cut(s)	1002
BspANI	GGCC	3 cut(s)	112, 151, 786
BspCNI	CTCAG	2 cut(s)	706, 999
BspLI	GGNNCC	3 cut(s)	196, 227, 324
BspPI	GGATC	3 cut(s)	263, 470, 993
BsrI	ACTGG	1 cut(s)	182
BssMI	GATC	5 cut(s)	268, 394, 475, 982, 998
BssNAI	GTATAC	1 cut(s)	259
Bst1107I	GTATAC	1 cut(s)	259
Bst2UI	CCWGG	2 cut(s)	144, 436
Bst4CI	ACNGT	3 cut(s)	424, 792, 830
Bst6I	CTCTTC	1 cut(s)	558
BstBAI	YACGTR	1 cut(s)	734
BstC8I	GCNNGC	2 cut(s)	149, 993
BstDEI	CTNAG	2 cut(s)	714, 1007
BstF5I	GGATG	2 cut(s)	583, 820
BstHHI	GCGC	1 cut(s)	66
BstKTI	GATC	5 cut(s)	271, 397, 478, 985, 1001
BstMAI	GTCTC	2 cut(s)	19, 299
BstMBI	GATC	5 cut(s)	268, 394, 475, 982, 998
BstMWI	GCNNNNNNNGC	2 cut(s)	504, 1001
BstNI	CCWGG	2 cut(s)	144, 436
BstSCI	CCNGG	2 cut(s)	142, 434
BstSFI	CTRYAG	2 cut(s)	747, 906
BstV1I	GCAGC	1 cut(s)	516
BstV2I	GAAGAC	1 cut(s)	590
BstX2I	RGATCY	1 cut(s)	394
BstYI	RGATCY	1 cut(s)	394
BstZ17I	GTATAC	1 cut(s)	259
BsuRI	GGCC	3 cut(s)	112, 151, 786
BtsCI	GGATG	2 cut(s)	583, 820
BtsIMutI	CAGTG	1 cut(s)	1004
Cac8I	GCNNGC	2 cut(s)	149, 993
CfoI	GCGC	1 cut(s)	66
Cfr13I	GGNCC	1 cut(s)	530
Csp6I	GTAC	4 cut(s)	6, 52, 383, 525
CviAII	CATG	2 cut(s)	131, 980
CviQI	GTAC	4 cut(s)	6, 52, 383, 525
DdeI	CTNAG	2 cut(s)	714, 1007
DpnI	GATC	5 cut(s)	270, 396, 477, 984, 1000
DpnII	GATC	5 cut(s)	268, 394, 475, 982, 998
DraIII	CACNNNGTG	1 cut(s)	975
EaeI	YGGCCR	1 cut(s)	784
Eam1104I	CTCTTC	1 cut(s)	558
EarI	CTCTTC	1 cut(s)	558
Eco32I	GATATC	1 cut(s)	741
Eco47I	GGWCC	1 cut(s)	530
Eco88I	CYCGRG	1 cut(s)	480
EcoRI	GAATTC	1 cut(s)	95
EcoRII	CCWGG	2 cut(s)	142, 434
EcoRV	GATATC	1 cut(s)	741
EcoT22I	ATGCAT	1 cut(s)	837
Esp3I	CGTCTC	2 cut(s)	19, 299
FaeI	CATG	2 cut(s)	134, 983
FatI	CATG	2 cut(s)	130, 979
FblI	GTMKAC	1 cut(s)	258
Fnu4HI	GCNGC	1 cut(s)	505
FokI	GGATG	2 cut(s)	590, 827
Fsp4HI	GCNGC	1 cut(s)	505
FspI	TGCGCA	1 cut(s)	65
GlaI	GCGC	1 cut(s)	65
GluI	GCNGC	1 cut(s)	505
HaeIII	GGCC	3 cut(s)	112, 151, 786
HapII	CCGG	1 cut(s)	528
HhaI	GCGC	1 cut(s)	66
Hin1II	CATG	2 cut(s)	134, 983
Hin6I	GCGC	1 cut(s)	64
HinP1I	GCGC	1 cut(s)	64
HindIII	AAGCTT	1 cut(s)	864
HinfI	GANTC	6 cut(s)	280, 431, 692, 702, 716, 818
HpaII	CCGG	1 cut(s)	528
HphI	GGTGA	2 cut(s)	443, 811
Hpy166II	GTNNAC	5 cut(s)	6, 122, 259, 284, 427
Hpy188I	TCNGA	2 cut(s)	309, 490
Hpy188III	TCNNGA	4 cut(s)	315, 428, 560, 932
Hpy8I	GTNNAC	5 cut(s)	6, 122, 259, 284, 427
HpyAV	CCTTC	4 cut(s)	298, 455, 805, 954
HpyCH4III	ACNGT	3 cut(s)	424, 792, 830
HpyCH4IV	ACGT	1 cut(s)	733
HpyCH4V	TGCA	4 cut(s)	102, 130, 504, 835
HpyF10VI	GCNNNNNNNGC	2 cut(s)	504, 1001
HpyF3I	CTNAG	2 cut(s)	714, 1007
HpySE526I	ACGT	1 cut(s)	733
Hsp92II	CATG	2 cut(s)	134, 983
HspAI	GCGC	1 cut(s)	64
Kzo9I	GATC	5 cut(s)	268, 394, 475, 982, 998
Lsp1109I	GCAGC	1 cut(s)	516
LweI	GCATC	1 cut(s)	568
MaeII	ACGT	1 cut(s)	733
MaeIII	GTNAC	2 cut(s)	601, 652
MalI	GATC	5 cut(s)	270, 396, 477, 984, 1000
MboI	GATC	5 cut(s)	268, 394, 475, 982, 998
MboII	GAAGA	5 cut(s)	401, 404, 575, 595, 735
MflI	RGATCY	1 cut(s)	394
MluCI	AATT	7 cut(s)	95, 162, 629, 645, 802, 926, 949
MlyI	GAGTC	3 cut(s)	289, 725, 812
MmeI	TCCRAC	1 cut(s)	669
Mph1103I	ATGCAT	1 cut(s)	837
MseI	TTAA	1 cut(s)	644
MslI	CAYNNNNRTG	3 cut(s)	173, 353, 597
MspI	CCGG	1 cut(s)	528
MspR9I	CCNGG	2 cut(s)	144, 436
MvaI	CCWGG	2 cut(s)	144, 436
MwoI	GCNNNNNNNGC	2 cut(s)	504, 1001
NdeII	GATC	5 cut(s)	268, 394, 475, 982, 998
NlaIII	CATG	2 cut(s)	134, 983
NlaIV	GGNNCC	3 cut(s)	196, 227, 324
NmuCI	GTSAC	1 cut(s)	652
NsbI	TGCGCA	1 cut(s)	65
NsiI	ATGCAT	1 cut(s)	837
PcsI	WCGNNNNNNNCGW	1 cut(s)	76
PfeI	GAWTC	3 cut(s)	431, 692, 702
PflMI	CCANNNNNTGG	1 cut(s)	985
PfoI	TCCNGGA	1 cut(s)	434
PkrI	GCNGC	1 cut(s)	506
PleI	GAGTC	3 cut(s)	288, 724, 812
PpsI	GAGTC	3 cut(s)	288, 724, 812
Ppu21I	YACGTR	1 cut(s)	734
PsiI	TTATAA	2 cut(s)	684, 825
Psp6I	CCWGG	2 cut(s)	142, 434
PspGI	CCWGG	2 cut(s)	142, 434
PspN4I	GGNNCC	3 cut(s)	196, 227, 324
PspPI	GGNCC	1 cut(s)	530
PsuI	RGATCY	1 cut(s)	394
RsaI	GTAC	4 cut(s)	7, 53, 384, 526
RsaNI	GTAC	4 cut(s)	6, 52, 383, 525
RseI	CAYNNNNRTG	3 cut(s)	173, 353, 597
SaqAI	TTAA	1 cut(s)	644
SatI	GCNGC	1 cut(s)	505
Sau3AI	GATC	5 cut(s)	268, 394, 475, 982, 998
Sau96I	GGNCC	1 cut(s)	530
SchI	GAGTC	3 cut(s)	289, 725, 812
ScrFI	CCNGG	2 cut(s)	144, 436
SfaNI	GCATC	1 cut(s)	568
SfcI	CTRYAG	2 cut(s)	747, 906
SinI	GGWCC	1 cut(s)	530
SmiMI	CAYNNNNRTG	3 cut(s)	173, 353, 597
SmlI	CTYRAG	1 cut(s)	365
SmoI	CTYRAG	1 cut(s)	365
Sse9I	AATT	7 cut(s)	95, 162, 629, 645, 802, 926, 949
SsiI	CCGC	1 cut(s)	1002
StyD4I	CCNGG	2 cut(s)	142, 434
TaaI	ACNGT	3 cut(s)	424, 792, 830
TaiI	ACGT	1 cut(s)	736
TaqI	TCGA	6 cut(s)	70, 245, 915, 922, 933, 997
TasI	AATT	7 cut(s)	95, 162, 629, 645, 802, 926, 949
TatI	WGTACW	2 cut(s)	51, 382
TfiI	GAWTC	3 cut(s)	431, 692, 702
Tru1I	TTAA	1 cut(s)	644
Tru9I	TTAA	1 cut(s)	644
TscAI	CASTG	1 cut(s)	1011
TseFI	GTSAC	1 cut(s)	652
TseI	GCWGC	1 cut(s)	504
Tsp45I	GTSAC	1 cut(s)	652
TspDTI	ATGAA	6 cut(s)	191, 231, 531, 535, 680, 824
TspGWI	ACGGA	1 cut(s)	281
TspRI	CASTG	1 cut(s)	1011
Van91I	CCANNNNNTGG	1 cut(s)	985
VpaK11BI	GGWCC	1 cut(s)	530
XapI	RAATTY	3 cut(s)	95, 629, 926
XmiI	GTMKAC	1 cut(s)	258
Zsp2I	ATGCAT	1 cut(s)	837

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.