Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000563

Physical Location & Seq

Genomic Coordinates Reverse (-)

34157460 .. 34158861

Gene Structure 1402 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g44332.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1275 bp

ATGAACCCTAAACACTTCTGCCGCCTTCTCCTCCTTAACAGAGACTTGAGAGAGATCATGTGGAAGACGACGATGCTGAAGAAGGAGTGTTTCTCTAACGTGAAGAAGACATGGGATCGACTATGCTTTCCTCATATCAGTAAGCAAATTTGTACCTCCGTCTCTCCAAAGCAGCCCAATAACAAGGACAAAGACTGGTTTTTGTACTTGAATATGCGCAATCGACTATGCCGTCTGAATATTAGCGACTTCTGCGAAAAGCAGGGATCATCCAAGTGTGAACTCATCCATGATTACTATCCAGGTTTTCCTCCAAATACAATTCCTACCAGAATGAAACCAGTAATCGTTGGCTCCAAAGTTTATATGTGGGGTGGTACATCGGTATCGGATGAAATCAACTTTAATGTATATACCTTTGATCCATCTGGGGATCCACCCTTCCTTCTCTGCGAGGGTCCGATTTCAAGGTTGATTTCACCAGAGATTCATGATCTTTATTCTGACATTAGAGTGTTGAGCACTGAGGAGAAAATCTATGTTCTTGATCTACCCCTTATTAGGGTTTTCGATCTTGTTCACCAATCCTGGACAGACATTATTCCTCCTCATCCCCGTTGTTTGCCTAATGTTAAACCCCATTTGTACGACCACTTCTTTTGCGGCCACAAGCTCTTTATCAGCACTATCAATTTCCCAATCAGCACTACCGATTTTGATACTACTAAGCCGGCAGGTGATACATACATTTTTGACACTCGTGAAGAAAAATGGGAAGACGCGAAGAACATACTTGGTGCTGATTTTATGGAGAGCTTGAGGACTTCCGACATAGAATATGCAGACGATGGTATGAATAGATTCAGGACTTCCGCCATAGAATTTGAGGGATTCGTAATAGCCGTGACAAATTATGGTGTCGGAGACTATGATAAGGTCATTGCTTATAAGTTGGATTCGAATGGAATTCCCAACTTGGAGTCGTATCAGGTGCTACATGAGATTAGACAGAATTTTTCTAATAGCGGGCTGTATTACTTGGGCAAATGTGATGGTGGTCGTGTGTGGTTGGTGGCTAATAGCGGGGATTGTTCATATGGTAGGATCCAGAATCAAACTCATCTAACAGTGTTTCAGGTTTCCGTCTCAAACGACATAGAAGGCAATCAAACCCTATCTGTAGAAATCGTGGCTCAAGCAGATCCAAATTTCGAACCCTCAAATTACTGCTCATCAGCTTTCGCCTTGTGCCATCATGCAGACAAGATCGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006479 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016278 GO:0016279 GO:0016740 GO:0016741 GO:0018022 GO:0018023 GO:0018026 GO:0018193 GO:0018205 GO:0019538 GO:0032259 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rubis-subs-bind SET

Protein Analysis

425

Amino Acids

48.66

Weight (kDa)

5.65

Isoelectric Point (pI)

36.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000563)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g40701 FvH4_3g40701 FvH4_3g42210 FvH4_4g30821 FvH4_4g30830 FvH4_4g30861 FvH4_4g30870 FvH4_4g30880 FvH4_4g30890 FvH4_6g30071 FvH4_6g44331 FvH4_6g44332 FvH4_6g44333
malus_domestica	MD15G1041200.v1.1 MD15G1041700.v1.1 MD15G1401000.v1.1
prunus_persica	Prupe.5G008800_v2.0.a1 Prupe.5G157900_v2.0.a1
pyrus_communis	pycom05g01010 pycom15g03820 pycom15g03830 pycom15g03850 pycom15g04240
rosa_chinensis	RchiOBHm_Chr5g0075231
rosa_laevigata	RLG00000008231 RLG00000008232 RLG00000008235 RLG00000008239 RLG00000008240 RLG00000008241 RLG00000021260 RLG00000021269 RLG00000036539 RLG00000036540 RLG00000037046
rosa_multiflora	Rmu_sc0000955.1_g000047 Rmu_sc0006420.1_g000034
rosa_roxburghii	Rroxscaffold_1G00000870 Rroxscaffold_1G00000880 Rroxscaffold_1G00006320 Rroxscaffold_2G00088990 Rroxscaffold_2G00089000 Rroxscaffold_2G00089010 Rroxscaffold_2G00089100 Rroxscaffold_5G00357190 Rroxscaffold_5G00357200
rosa_rugosa	Rorug04G0118300 Rorug04G0118400 Rorug05G0437400 Rorug05G0439900
rosa_samantha	Rh2AG552900 Rh2AG553000 Rh2BG566800 Rh2CG536900 Rh2DG575800 Rh2DG575900 Rh4AG177300 Rh4AG177400 Rh4AG178100 Rh4AG178300 Rh4AG178400 Rh4AG178500 Rh4BG177100 Rh4BG177200 Rh4BG177700 Rh4CG188300 Rh4CG188700 Rh4CG188800 Rh4CG189000 Rh4CG189100 Rh5AG494400 Rh5AG497000 Rh5AG537400 Rh5BG515800 Rh5BG515900 Rh5BG516000 Rh5CG539600 Rh5CG539700 Rh5CG539800 Rh5DG528600 Rh5DG528700
rosa_wichuraiana	Rw2G045740 Rw4G014830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	948
AarI	CACCTGC	1 cut(s)	725
AasI	GACNNNNNNGTC	1 cut(s)	231
Acc16I	TGCGCA	1 cut(s)	218
Acc36I	ACCTGC	1 cut(s)	725
AccII	CGCG	1 cut(s)	782
AciI	CCGC	5 cut(s)	22, 663, 873, 1026, 1083
AclWI	GGATC	8 cut(s)	123, 274, 416, 428, 441, 1099, 1112, 1196
AcoI	YGGCCR	1 cut(s)	664
AcsI	RAATTY	5 cut(s)	147, 881, 966, 1012, 1207
AcuI	CTGAAG	1 cut(s)	98
AfaI	GTAC	4 cut(s)	154, 206, 379, 647
AfiI	CCNNNNNNNGG	2 cut(s)	561, 562
AgsI	TTSAA	2 cut(s)	211, 468
AjnI	CCWGG	2 cut(s)	301, 587
AluBI	AGCT	3 cut(s)	673, 816, 1238
AluI	AGCT	3 cut(s)	673, 816, 1238
Alw21I	GWGCWC	1 cut(s)	524
Alw26I	GTCTC	4 cut(s)	36, 166, 918, 1150
AlwI	GGATC	8 cut(s)	123, 274, 416, 428, 441, 1099, 1112, 1196
AoxI	GGCC	1 cut(s)	664
ApeKI	GCWGC	1 cut(s)	172
ApoI	RAATTY	5 cut(s)	147, 881, 966, 1012, 1207
Asp700I	GAANNNNTTC	1 cut(s)	860
AspLEI	GCGC	1 cut(s)	219
AspS9I	GGNCC	1 cut(s)	458
AsuHPI	GGTGA	3 cut(s)	471, 572, 749
AsuII	TTCGAA	2 cut(s)	959, 1212
AvaII	GGWCC	1 cut(s)	458
BaeI	ACNNNNGTAYC	4 cut(s)	369, 369, 402, 402
BamHI	GGATCC	2 cut(s)	433, 1104
BarI	GAAGNNNNNNTAC	2 cut(s)	638, 670
BauI	CACGAG	1 cut(s)	759
BbsI	GAAGAC	3 cut(s)	71, 113, 783
Bbv12I	GWGCWC	1 cut(s)	524
BbvI	GCAGC	1 cut(s)	184
BccI	CCATC	4 cut(s)	433, 842, 1046, 1260
BceAI	ACGGC	2 cut(s)	216, 887
BciT130I	CCWGG	2 cut(s)	303, 589
BcoDI	GTCTC	4 cut(s)	36, 166, 918, 1150
BfmI	CTRYAG	1 cut(s)	1179
BfuAI	ACCTGC	1 cut(s)	725
BisI	GCNGC	3 cut(s)	22, 173, 664
BlsI	GCNGC	3 cut(s)	23, 174, 665
Bme1390I	CCNGG	2 cut(s)	303, 589
Bme18I	GGWCC	1 cut(s)	458
BmgT120I	GGNCC	1 cut(s)	458
BmiI	GGNNCC	4 cut(s)	355, 435, 459, 1106
BmrFI	CCNGG	2 cut(s)	303, 589
BmsI	GCATC	1 cut(s)	63
BpiI	GAAGAC	3 cut(s)	71, 113, 783
BplI	GAGNNNNNCTC	2 cut(s)	77, 109
Bpu14I	TTCGAA	2 cut(s)	959, 1212
BpuEI	CTTGAG	3 cut(s)	67, 838, 1179
BsaBI	GATNNNNATC	1 cut(s)	297
Bsc4I	CCNNNNNNNGG	2 cut(s)	561, 562
Bse118I	RCCGGY	1 cut(s)	730
Bse1I	ACTGG	2 cut(s)	200, 341
Bse3DI	GCAATG	1 cut(s)	939
Bse8I	GATNNNNATC	1 cut(s)	297
BseBI	CCWGG	2 cut(s)	303, 589
BseGI	GGATG	4 cut(s)	269, 285, 397, 610
BseJI	GATNNNNATC	1 cut(s)	297
BseLI	CCNNNNNNNGG	2 cut(s)	561, 562
BseMI	GCAATG	1 cut(s)	939
BseMII	CTCAG	1 cut(s)	516
BseNI	ACTGG	2 cut(s)	200, 341
BseRI	GAGGAG	3 cut(s)	20, 542, 597
BseXI	GCAGC	1 cut(s)	184
Bsh1236I	CGCG	1 cut(s)	782
BshFI	GGCC	1 cut(s)	666
BsiHKAI	GWGCWC	1 cut(s)	524
BsiSI	CCGG	1 cut(s)	731
BslI	CCNNNNNNNGG	2 cut(s)	561, 562
BsmAI	GTCTC	4 cut(s)	36, 166, 918, 1150
BsmBI	CGTCTC	2 cut(s)	166, 1150
BsnI	GGCC	1 cut(s)	666
Bsp119I	TTCGAA	2 cut(s)	959, 1212
Bsp1286I	GDGCHC	1 cut(s)	524
BspACI	CCGC	5 cut(s)	22, 663, 873, 1026, 1083
BspANI	GGCC	1 cut(s)	666
BspCNI	CTCAG	1 cut(s)	517
BspFNI	CGCG	1 cut(s)	782
BspHI	TCATGA	1 cut(s)	490
BspLI	GGNNCC	4 cut(s)	355, 435, 459, 1106
BspMI	ACCTGC	1 cut(s)	725
BspPI	GGATC	8 cut(s)	123, 274, 416, 428, 441, 1099, 1112, 1196
BspT104I	TTCGAA	2 cut(s)	959, 1212
BsrDI	GCAATG	1 cut(s)	939
BsrFI	RCCGGY	1 cut(s)	730
BsrI	ACTGG	2 cut(s)	200, 341
BssAI	RCCGGY	1 cut(s)	730
BssSI	CACGAG	1 cut(s)	759
Bst2BI	CACGAG	1 cut(s)	759
Bst2UI	CCWGG	2 cut(s)	303, 589
Bst4CI	ACNGT	1 cut(s)	1129
BstBI	TTCGAA	2 cut(s)	959, 1212
BstC8I	GCNNGC	2 cut(s)	732, 1028
BstDEI	CTNAG	2 cut(s)	525, 726
BstF5I	GGATG	4 cut(s)	269, 285, 397, 610
BstFNI	CGCG	1 cut(s)	782
BstHHI	GCGC	1 cut(s)	219
BstMAI	GTCTC	4 cut(s)	36, 166, 918, 1150
BstMWI	GCNNNNNNNGC	1 cut(s)	252
BstNI	CCWGG	2 cut(s)	303, 589
BstSCI	CCNGG	2 cut(s)	301, 587
BstSFI	CTRYAG	1 cut(s)	1179
BstUI	CGCG	1 cut(s)	782
BstV1I	GCAGC	1 cut(s)	184
BstV2I	GAAGAC	3 cut(s)	71, 113, 783
BstX2I	RGATCY	3 cut(s)	433, 1104, 1201
BstYI	RGATCY	3 cut(s)	433, 1104, 1201
BsuRI	GGCC	1 cut(s)	666
BtsCI	GGATG	4 cut(s)	269, 285, 397, 610
BtsIMutI	CAGTG	2 cut(s)	522, 1134
BveI	ACCTGC	1 cut(s)	725
Cac8I	GCNNGC	2 cut(s)	732, 1028
CciI	TCATGA	1 cut(s)	490
CfoI	GCGC	1 cut(s)	219
Cfr10I	RCCGGY	1 cut(s)	730
Cfr13I	GGNCC	1 cut(s)	458
CseI	GACGC	1 cut(s)	788
Csp6I	GTAC	4 cut(s)	153, 205, 378, 646
CspCI	CAANNNNNGTGG	2 cut(s)	641, 676
CviAII	CATG	6 cut(s)	58, 111, 290, 491, 998, 1256
CviQI	GTAC	4 cut(s)	153, 205, 378, 646
DdeI	CTNAG	2 cut(s)	525, 726
DrdI	GACNNNNNNGTC	1 cut(s)	231
DseDI	GACNNNNNNGTC	1 cut(s)	231
EaeI	YGGCCR	1 cut(s)	664
EciI	GGCGGA	1 cut(s)	862
Eco47I	GGWCC	1 cut(s)	458
Eco57I	CTGAAG	1 cut(s)	98
EcoRI	GAATTC	1 cut(s)	966
EcoRII	CCWGG	2 cut(s)	301, 587
Esp3I	CGTCTC	2 cut(s)	166, 1150
FaeI	CATG	6 cut(s)	61, 114, 293, 494, 1001, 1259
FatI	CATG	6 cut(s)	57, 110, 289, 490, 997, 1255
FauI	CCCGC	2 cut(s)	1019, 1076
FauNDI	CATATG	1 cut(s)	1096
Fnu4HI	GCNGC	3 cut(s)	22, 173, 664
FokI	GGATG	4 cut(s)	256, 272, 404, 597
Fsp4HI	GCNGC	3 cut(s)	22, 173, 664
FspI	TGCGCA	1 cut(s)	218
GlaI	GCGC	1 cut(s)	218
GluI	GCNGC	3 cut(s)	22, 173, 664
HaeIII	GGCC	1 cut(s)	666
HapII	CCGG	1 cut(s)	731
HgaI	GACGC	1 cut(s)	788
HhaI	GCGC	1 cut(s)	219
Hin1II	CATG	6 cut(s)	61, 114, 293, 494, 1001, 1259
Hin6I	GCGC	1 cut(s)	217
HinP1I	GCGC	1 cut(s)	217
HinfI	GANTC	6 cut(s)	487, 861, 891, 956, 980, 1111
HpaII	CCGG	1 cut(s)	731
HphI	GGTGA	3 cut(s)	471, 572, 749
Hpy166II	GTNNAC	2 cut(s)	281, 580
Hpy188I	TCNGA	6 cut(s)	237, 391, 462, 505, 829, 923
Hpy188III	TCNNGA	5 cut(s)	491, 545, 761, 865, 1108
Hpy8I	GTNNAC	2 cut(s)	281, 580
Hpy99I	CGWCG	1 cut(s)	73
HpyAV	CCTTC	5 cut(s)	35, 76, 451, 455, 1154
HpyCH4III	ACNGT	1 cut(s)	1129
HpyCH4IV	ACGT	1 cut(s)	99
HpyCH4V	TGCA	2 cut(s)	842, 1259
HpyF10VI	GCNNNNNNNGC	1 cut(s)	252
HpyF3I	CTNAG	2 cut(s)	525, 726
HpySE526I	ACGT	1 cut(s)	99
Hsp92II	CATG	6 cut(s)	61, 114, 293, 494, 1001, 1259
HspAI	GCGC	1 cut(s)	217
KroI	GCCGGC	1 cut(s)	730
KroNI	GCCGGC	1 cut(s)	732
LmnI	GCTCC	1 cut(s)	359
Lsp1109I	GCAGC	1 cut(s)	184
LweI	GCATC	1 cut(s)	63
MaeII	ACGT	1 cut(s)	99
MaeIII	GTNAC	1 cut(s)	904
MboII	GAAGA	7 cut(s)	76, 91, 115, 118, 776, 788, 796
MflI	RGATCY	3 cut(s)	433, 1104, 1201
MhlI	GDGCHC	1 cut(s)	524
MluCI	AATT	9 cut(s)	147, 321, 691, 881, 910, 966, 1012, 1207, 1222
MlyI	GAGTC	1 cut(s)	989
MmeI	TCCRAC	3 cut(s)	852, 901, 933
MroNI	GCCGGC	1 cut(s)	730
MroXI	GAANNNNTTC	1 cut(s)	860
MseI	TTAA	3 cut(s)	36, 405, 633
MslI	CAYNNNNRTG	2 cut(s)	274, 512
MspI	CCGG	1 cut(s)	731
MspR9I	CCNGG	2 cut(s)	303, 589
MvaI	CCWGG	2 cut(s)	303, 589
MvnI	CGCG	1 cut(s)	782
MwoI	GCNNNNNNNGC	1 cut(s)	252
NaeI	GCCGGC	1 cut(s)	732
NdeI	CATATG	1 cut(s)	1096
NgoMIV	GCCGGC	1 cut(s)	730
NlaIII	CATG	6 cut(s)	61, 114, 293, 494, 1001, 1259
NlaIV	GGNNCC	4 cut(s)	355, 435, 459, 1106
NmuCI	GTSAC	1 cut(s)	904
NsbI	TGCGCA	1 cut(s)	218
NspV	TTCGAA	2 cut(s)	959, 1212
PagI	TCATGA	1 cut(s)	490
PaqCI	CACCTGC	1 cut(s)	725
PcsI	WCGNNNNNNNCGW	2 cut(s)	229, 900
PdiI	GCCGGC	1 cut(s)	732
PdmI	GAANNNNTTC	1 cut(s)	860
PfeI	GAWTC	5 cut(s)	487, 861, 891, 956, 1111
PfoI	TCCNGGA	1 cut(s)	587
PkrI	GCNGC	3 cut(s)	23, 174, 665
PleI	GAGTC	1 cut(s)	988
PpsI	GAGTC	1 cut(s)	988
PsiI	TTATAA	1 cut(s)	948
Psp6I	CCWGG	2 cut(s)	301, 587
PspGI	CCWGG	2 cut(s)	301, 587
PspN4I	GGNNCC	4 cut(s)	355, 435, 459, 1106
PspPI	GGNCC	1 cut(s)	458
PsuI	RGATCY	3 cut(s)	433, 1104, 1201
RsaI	GTAC	4 cut(s)	154, 206, 379, 647
RsaNI	GTAC	4 cut(s)	153, 205, 378, 646
RseI	CAYNNNNRTG	2 cut(s)	274, 512
SaqAI	TTAA	3 cut(s)	36, 405, 633
SatI	GCNGC	3 cut(s)	22, 173, 664
Sau96I	GGNCC	1 cut(s)	458
SchI	GAGTC	1 cut(s)	989
ScrFI	CCNGG	2 cut(s)	303, 589
SduI	GDGCHC	1 cut(s)	524
SfaNI	GCATC	1 cut(s)	63
SfcI	CTRYAG	1 cut(s)	1179
SfuI	TTCGAA	2 cut(s)	959, 1212
SinI	GGWCC	1 cut(s)	458
SmiMI	CAYNNNNRTG	2 cut(s)	274, 512
SmlI	CTYRAG	3 cut(s)	46, 817, 1194
SmoI	CTYRAG	3 cut(s)	46, 817, 1194
Sse9I	AATT	9 cut(s)	147, 321, 691, 881, 910, 966, 1012, 1207, 1222
SsiI	CCGC	5 cut(s)	22, 663, 873, 1026, 1083
SspI	AATATT	1 cut(s)	241
StyD4I	CCNGG	2 cut(s)	301, 587
TaaI	ACNGT	1 cut(s)	1129
TaiI	ACGT	1 cut(s)	102
TaqI	TCGA	6 cut(s)	118, 223, 570, 959, 1212, 1269
TasI	AATT	9 cut(s)	147, 321, 691, 881, 910, 966, 1012, 1207, 1222
TatI	WGTACW	1 cut(s)	204
TauI	GCSGC	2 cut(s)	24, 666
TfiI	GAWTC	5 cut(s)	487, 861, 891, 956, 1111
Tru1I	TTAA	3 cut(s)	36, 405, 633
Tru9I	TTAA	3 cut(s)	36, 405, 633
TscAI	CASTG	2 cut(s)	529, 1134
TseFI	GTSAC	1 cut(s)	904
TseI	GCWGC	1 cut(s)	172
Tsp45I	GTSAC	1 cut(s)	904
TspDTI	ATGAA	6 cut(s)	17, 350, 408, 479, 869, 1083
TspGWI	ACGGA	2 cut(s)	148, 1132
TspRI	CASTG	2 cut(s)	529, 1134
VpaK11BI	GGWCC	1 cut(s)	458
XapI	RAATTY	5 cut(s)	147, 881, 966, 1012, 1207
XmnI	GAANNNNTTC	1 cut(s)	860

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.