FvH4_4g02550

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000417
Physical Location & Seq
Reverse (-)
2308459 .. 2309624
1166 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g02550.t1

Sequence Viewer

Length: 741 bp
ATGGCGGTGCATCACGCTTCTATTGATATGGAATTCCATGACTGCACGAAATGCGAGAAATTATGCAAGAAATGCATCTTCAAAGTCCCTAAGGTGCCGCGGAGACAAAACTCGGAAGCATATACACCTGACATAGTCTCAATTGGACCTTTTCATCGTCGAGGGAAGGGAAGCAAGGGAGAAAAAGAATGCGAGGAATGCAAGAATTGCAAGAAGTGCAAGGAATGCAAGTTATGTAAAAAATGCAAGAAAGGCAAGGAAGGCAATGAAGAAGAATTTCAACTCATGGAACGAGTGAAAGAGAGTTATTTGAATGAAGTGCTCAAGGGCATGATGATGTCAACAGAAATGTTGACGGCAAAGGTTATTGAGCTTTCAGATCGAAAGAATGAAGGCACGATTGGGTTTGAGCAACGTGCCCGCGGCTTCTATGCCGAGCCACCACTTGATATTTCCTCCGAAGAATTCATCAAGATGATGATAGTTGACGGTTGCTTCCTCATTCAGCTATTTCGGAAGTGTAATGATCCAACACTAAGGGATATTGAAGATCCGGTATTCAACATGGATTGCATGTTCCATTTCCTATGCCATGACCTTTTGCTCCTAGAAAATCAACTACCTTGGTTTGTTCTTGAGATTTTATACAGCCTGTTAGTATATATTTATGTTGGCATTCCTATACAAAATGCTAGGATGCCTTGCATGTACATAATCTATGTGTTCCCTAGTTGGATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

247

Amino Acids

28.76

Weight (kDa)

6.96

Isoelectric Point (pI)

46.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 26 - 218 4.2e-39 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000417)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g32770 FvH4_4g02520 FvH4_4g02520 FvH4_4g02530 FvH4_4g02550 FvH4_4g17730 FvH4_4g17730
rosa_chinensis RchiOBHm_Chr1g0318801 RchiOBHm_Chr4g0390011 RchiOBHm_Chr4g0390031 RchiOBHm_Chr4g0390041 RchiOBHm_Chr4g0390061 RchiOBHm_Chr4g0390091 RchiOBHm_Chr4g0390101 RchiOBHm_Chr4g0390141 RchiOBHm_Chr4g0390181 RchiOBHm_Chr4g0390191 RchiOBHm_Chr4g0390201 RchiOBHm_Chr4g0390231 RchiOBHm_Chr4g0390241 RchiOBHm_Chr4g0390251 RchiOBHm_Chr4g0390661 RchiOBHm_Chr4g0390711 RchiOBHm_Chr4g0390741 RchiOBHm_Chr4g0390771 RchiOBHm_Chr4g0390801 RchiOBHm_Chr5g0058271
rosa_laevigata RLG00000008685 RLG00000009910 RLG00000009930 RLG00000009932 RLG00000009933 RLG00000009934 RLG00000009935 RLG00000009937 RLG00000009938 RLG00000009940 RLG00000035208 RLG00000035209
rosa_multiflora Rmu_co8281525.1_g000001 Rmu_co8464925.1_g000001 Rmu_sc0000171.1_g000023 Rmu_sc0000171.1_g000027 Rmu_sc0000367.1_g000061 Rmu_sc0000679.1_g000027 Rmu_sc0001380.1_g000026 Rmu_sc0001380.1_g000030 Rmu_sc0001471.1_g000010 Rmu_sc0003643.1_g000007 Rmu_sc0004336.1_g000002 Rmu_sc0004336.1_g000011 Rmu_sc0004336.1_g000012 Rmu_sc0005003.1_g000007 Rmu_sc0005003.1_g000012 Rmu_sc0005003.1_g000016 Rmu_sc0005003.1_g000022 Rmu_sc0008322.1_g000002 Rmu_sc0011197.1_g000004 Rmu_sc0014620.1_g000006 Rmu_sc0014620.1_g000017 Rmu_sc0018617.1_g000002
rosa_roxburghii Rroxscaffold_1G00022270 Rroxscaffold_5G00336180 Rroxscaffold_5G00336220 Rroxscaffold_5G00336240 Rroxscaffold_5G00336250 Rroxscaffold_5G00336290 Rroxscaffold_5G00336310 Rroxscaffold_5G00336350 Rroxscaffold_5G00336370 Rroxscaffold_5G00336670 Rroxscaffold_5G00336700 Rroxscaffold_5G00336710
rosa_rugosa Rorug01G0020300 Rorug03G0327700 Rorug03G0327800 Rorug03G0328000 Rorug03G0328100 Rorug03G0328300 Rorug03G0328600 Rorug03G0328600 Rorug03G0331700 Rorug03G0331800 Rorug05G0312900
rosa_samantha Rh4DG024700 Rh4DG024900 Rh4DG025000 Rh4DG025200 Rh4DG025500 Rh4DG025900 Rh4DG026200 Rh4DG030200 Rh5DG407000
rosa_wichuraiana Rw4G002360 Rw4G002410 Rw4G002420 Rw4G002450 Rw4G002480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 94
AccII CGCG 2 cut(s) 100, 423
AciI CCGC 5 cut(s) 5, 98, 100, 421, 423
AclWI GGATC 2 cut(s) 521, 545
AcsI RAATTY 3 cut(s) 32, 275, 464
AfaI GTAC 1 cut(s) 710
AgsI TTSAA 5 cut(s) 82, 281, 313, 548, 562
AjuI GAANNNNNNNTTGG 2 cut(s) 384, 416
AloI GAACNNNNNNTCC 2 cut(s) 560, 592
AluBI AGCT 2 cut(s) 373, 508
AluI AGCT 2 cut(s) 373, 508
Alw21I GWGCWC 1 cut(s) 324
Alw26I GTCTC 2 cut(s) 97, 142
AlwI GGATC 2 cut(s) 521, 545
ApoI RAATTY 3 cut(s) 32, 275, 464
Asp700I GAANNNNTTC 1 cut(s) 276
AspS9I GGNCC 1 cut(s) 146
AvaII GGWCC 1 cut(s) 146
AxyI CCTNAGG 1 cut(s) 90
BaeGI GKGCMC 1 cut(s) 421
BanI GGYRCC 1 cut(s) 94
Bbv12I GWGCWC 1 cut(s) 324
BceAI ACGGC 1 cut(s) 372
BcoDI GTCTC 2 cut(s) 97, 142
BfaI CTAG 3 cut(s) 608, 693, 729
BisI GCNGC 2 cut(s) 98, 424
BlsI GCNGC 2 cut(s) 99, 425
Bme18I GGWCC 1 cut(s) 146
BmgT120I GGNCC 1 cut(s) 146
BmiI GGNNCC 1 cut(s) 96
BmsI GCATC 3 cut(s) 19, 84, 687
BpuEI CTTGAG 2 cut(s) 308, 656
BsaJI CCNNGG 3 cut(s) 98, 421, 623
BsaWI WCCGGW 1 cut(s) 553
Bse21I CCTNAGG 1 cut(s) 90
Bse3DI GCAATG 1 cut(s) 271
BseDI CCNNGG 3 cut(s) 98, 421, 623
BseGI GGATG 1 cut(s) 702
BseMI GCAATG 1 cut(s) 271
BseSI GKGCMC 1 cut(s) 421
BsgI GTGCAG 1 cut(s) 28
Bsh1236I CGCG 2 cut(s) 100, 423
BshNI GGYRCC 1 cut(s) 94
BsiHKAI GWGCWC 1 cut(s) 324
BsiSI CCGG 1 cut(s) 554
BslFI GGGAC 1 cut(s) 71
BsmAI GTCTC 2 cut(s) 97, 142
BsmFI GGGAC 1 cut(s) 71
BsmI GAATGC 4 cut(s) 194, 203, 230, 675
Bsp1286I GDGCHC 2 cut(s) 324, 421
Bsp1407I TGTACA 1 cut(s) 708
Bsp143I GATC 3 cut(s) 379, 526, 550
BspACI CCGC 5 cut(s) 5, 98, 100, 421, 423
BspFNI CGCG 2 cut(s) 100, 423
BspLI GGNNCC 1 cut(s) 96
BspPI GGATC 2 cut(s) 521, 545
BspT107I GGYRCC 1 cut(s) 94
BsrDI GCAATG 1 cut(s) 271
BsrGI TGTACA 1 cut(s) 708
BssECI CCNNGG 3 cut(s) 98, 421, 623
BssMI GATC 3 cut(s) 379, 526, 550
BssT1I CCWWGG 1 cut(s) 623
Bst4CI ACNGT 1 cut(s) 491
BstAPI GCANNNNNTGC 5 cut(s) 51, 72, 207, 216, 225
BstAUI TGTACA 1 cut(s) 708
BstC8I GCNNGC 1 cut(s) 421
BstDEI CTNAG 2 cut(s) 90, 536
BstDSI CCRYGG 2 cut(s) 98, 421
BstF5I GGATG 1 cut(s) 702
BstFNI CGCG 2 cut(s) 100, 423
BstKTI GATC 3 cut(s) 382, 529, 553
BstMAI GTCTC 2 cut(s) 97, 142
BstMBI GATC 3 cut(s) 379, 526, 550
BstMWI GCNNNNNNNGC 8 cut(s) 51, 72, 198, 207, 216, 225, 252, 261
BstNSI RCATGY 2 cut(s) 577, 709
BstSLI GKGCMC 1 cut(s) 421
BstUI CGCG 2 cut(s) 100, 423
BstX2I RGATCY 1 cut(s) 550
BstYI RGATCY 1 cut(s) 550
Bsu36I CCTNAGG 1 cut(s) 90
BtgI CCRYGG 2 cut(s) 98, 421
BtsCI GGATG 1 cut(s) 702
Cac8I GCNNGC 1 cut(s) 421
Cfr13I GGNCC 1 cut(s) 146
Cfr42I CCGCGG 2 cut(s) 101, 424
Csp6I GTAC 1 cut(s) 709
CviAII CATG 7 cut(s) 38, 286, 331, 565, 574, 593, 706
CviJI RGCY 5 cut(s) 373, 426, 439, 508, 651
CviKI_1 RGCY 5 cut(s) 373, 426, 439, 508, 651
CviQI GTAC 1 cut(s) 709
DdeI CTNAG 2 cut(s) 90, 536
DpnI GATC 3 cut(s) 381, 528, 552
DpnII GATC 3 cut(s) 379, 526, 550
Eco130I CCWWGG 1 cut(s) 623
Eco47I GGWCC 1 cut(s) 146
Eco81I CCTNAGG 1 cut(s) 90
EcoRI GAATTC 2 cut(s) 32, 464
EcoT14I CCWWGG 1 cut(s) 623
EcoT22I ATGCAT 1 cut(s) 77
ErhI CCWWGG 1 cut(s) 623
FaeI CATG 7 cut(s) 41, 289, 334, 568, 577, 596, 709
FaqI GGGAC 1 cut(s) 71
FatI CATG 7 cut(s) 37, 285, 330, 564, 573, 592, 705
FauI CCCGC 1 cut(s) 428
Fnu4HI GCNGC 2 cut(s) 98, 424
FokI GGATG 1 cut(s) 709
Fsp4HI GCNGC 2 cut(s) 98, 424
FspBI CTAG 3 cut(s) 608, 693, 729
GluI GCNGC 2 cut(s) 98, 424
HapII CCGG 1 cut(s) 554
Hin1II CATG 7 cut(s) 41, 289, 334, 568, 577, 596, 709
HincII GTYRAC 3 cut(s) 342, 354, 487
HindII GTYRAC 3 cut(s) 342, 354, 487
HpaII CCGG 1 cut(s) 554
Hpy166II GTNNAC 3 cut(s) 342, 354, 487
Hpy188I TCNGA 4 cut(s) 115, 379, 460, 516
Hpy188III TCNNGA 2 cut(s) 472, 635
Hpy8I GTNNAC 3 cut(s) 342, 354, 487
Hpy99I CGWCG 1 cut(s) 162
HpyAV CCTTC 3 cut(s) 160, 254, 386
HpyCH4III ACNGT 1 cut(s) 491
HpyCH4IV ACGT 1 cut(s) 415
HpyF10VI GCNNNNNNNGC 8 cut(s) 51, 72, 198, 207, 216, 225, 252, 261
HpyF3I CTNAG 2 cut(s) 90, 536
HpySE526I ACGT 1 cut(s) 415
Hsp92II CATG 7 cut(s) 41, 289, 334, 568, 577, 596, 709
KspI CCGCGG 2 cut(s) 101, 424
Kzo9I GATC 3 cut(s) 379, 526, 550
LmnI GCTCC 1 cut(s) 609
LpnPI CCDG 3 cut(s) 141, 567, 665
LweI GCATC 3 cut(s) 19, 84, 687
MaeI CTAG 3 cut(s) 608, 693, 729
MaeII ACGT 1 cut(s) 415
MalI GATC 3 cut(s) 381, 528, 552
MboI GATC 3 cut(s) 379, 526, 550
MboII GAAGA 5 cut(s) 70, 281, 284, 473, 560
MfeI CAATTG 1 cut(s) 141
MflI RGATCY 1 cut(s) 550
MhlI GDGCHC 2 cut(s) 324, 421
MluCI AATT 6 cut(s) 32, 59, 141, 205, 275, 464
MmeI TCCRAC 2 cut(s) 554, 713
MnlI CCTC 4 cut(s) 155, 187, 466, 509
Mph1103I ATGCAT 1 cut(s) 77
MroXI GAANNNNTTC 1 cut(s) 276
MslI CAYNNNNRTG 2 cut(s) 335, 473
MspA1I CMGCKG 2 cut(s) 100, 423
MspI CCGG 1 cut(s) 554
MunI CAATTG 1 cut(s) 141
Mva1269I GAATGC 4 cut(s) 194, 203, 230, 675
MvnI CGCG 2 cut(s) 100, 423
MwoI GCNNNNNNNGC 8 cut(s) 51, 72, 198, 207, 216, 225, 252, 261
NdeII GATC 3 cut(s) 379, 526, 550
NlaIII CATG 7 cut(s) 41, 289, 334, 568, 577, 596, 709
NlaIV GGNNCC 1 cut(s) 96
NmeAIII GCCGAG 1 cut(s) 460
NsiI ATGCAT 1 cut(s) 77
NspI RCATGY 2 cut(s) 577, 709
PctI GAATGC 4 cut(s) 194, 203, 230, 675
PdmI GAANNNNTTC 1 cut(s) 276
PflFI GACNNNGTC 1 cut(s) 134
PkrI GCNGC 2 cut(s) 99, 425
PspN4I GGNNCC 1 cut(s) 96
PspPI GGNCC 1 cut(s) 146
PsuI RGATCY 1 cut(s) 550
PsyI GACNNNGTC 1 cut(s) 134
RsaI GTAC 1 cut(s) 710
RsaNI GTAC 1 cut(s) 709
RseI CAYNNNNRTG 2 cut(s) 335, 473
SacII CCGCGG 2 cut(s) 101, 424
SatI GCNGC 2 cut(s) 98, 424
Sau3AI GATC 3 cut(s) 379, 526, 550
Sau96I GGNCC 1 cut(s) 146
SduI GDGCHC 2 cut(s) 324, 421
SetI ASST 9 cut(s) 96, 130, 151, 366, 375, 418, 510, 600, 625
SfaNI GCATC 3 cut(s) 19, 84, 687
Sfr303I CCGCGG 2 cut(s) 101, 424
SgrBI CCGCGG 2 cut(s) 101, 424
SinI GGWCC 1 cut(s) 146
SmiMI CAYNNNNRTG 2 cut(s) 335, 473
SmlI CTYRAG 2 cut(s) 323, 635
SmoI CTYRAG 2 cut(s) 323, 635
Sse9I AATT 6 cut(s) 32, 59, 141, 205, 275, 464
SsiI CCGC 5 cut(s) 5, 98, 100, 421, 423
SspMI CTAG 3 cut(s) 608, 693, 729
StyI CCWWGG 1 cut(s) 623
TaaI ACNGT 1 cut(s) 491
TaiI ACGT 1 cut(s) 418
TaqI TCGA 2 cut(s) 160, 382
TasI AATT 6 cut(s) 32, 59, 141, 205, 275, 464
TatI WGTACW 1 cut(s) 708
TauI GCSGC 2 cut(s) 100, 426
TspDTI ATGAA 5 cut(s) 143, 282, 330, 405, 457
Tth111I GACNNNGTC 1 cut(s) 134
VpaK11BI GGWCC 1 cut(s) 146
XapI RAATTY 3 cut(s) 32, 275, 464
XceI RCATGY 2 cut(s) 577, 709
XmnI GAANNNNTTC 1 cut(s) 276
XspI CTAG 3 cut(s) 608, 693, 729
Zsp2I ATGCAT 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.