Rmu_co8281525.1_g000001

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8281525.1
OG0000417
Physical Location & Seq
Reverse (-)
145 .. 777
633 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8281525.1_g000001.1.cds

Sequence Viewer

Length: 633 bp
atggagatcaaagacgagagagcaaataaagttcgtaaacaggatttcttcgatccagaagtacatcagatgcatactgcgactgcgctttcaaaggcaggcattagattcagaaaagtggaaagagaaagcataatggacatagaatttgaagagggccgcgttctcaccaatggagttttcaatggagtacttactattccacagctaaacgttggaatgttgtctgaatcattattcaggaaccttattgctattgagcaatgctaccctggttattcaaatgaaataacatcttatgccatcttaatggacaatctcatctcttccaaagaagatatggaattactctgcaaggcgaaagtaataggtaattggctgagtgatgaagatggttgcaagttcttcaacaacctttacaagggtatcccgcacaacaagttttactatgttgatctctgcgagaaattgaacagtggttatagaattagagggtatacatgggtggcttcattcaagactgaaaagttctctaacccatggacagttgctgctttcttcataggtattctccttctggctctcaacctgtggacctccacaaataacattcggagcttcatgcagaaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

210

Amino Acids

24.27

Weight (kDa)

6.83

Isoelectric Point (pI)

30.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000417)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g32770 FvH4_4g02520 FvH4_4g02520 FvH4_4g02530 FvH4_4g02550 FvH4_4g17730 FvH4_4g17730
rosa_chinensis RchiOBHm_Chr1g0318801 RchiOBHm_Chr4g0390011 RchiOBHm_Chr4g0390031 RchiOBHm_Chr4g0390041 RchiOBHm_Chr4g0390061 RchiOBHm_Chr4g0390091 RchiOBHm_Chr4g0390101 RchiOBHm_Chr4g0390141 RchiOBHm_Chr4g0390181 RchiOBHm_Chr4g0390191 RchiOBHm_Chr4g0390201 RchiOBHm_Chr4g0390231 RchiOBHm_Chr4g0390241 RchiOBHm_Chr4g0390251 RchiOBHm_Chr4g0390661 RchiOBHm_Chr4g0390711 RchiOBHm_Chr4g0390741 RchiOBHm_Chr4g0390771 RchiOBHm_Chr4g0390801 RchiOBHm_Chr5g0058271
rosa_laevigata RLG00000008685 RLG00000009910 RLG00000009930 RLG00000009932 RLG00000009933 RLG00000009934 RLG00000009935 RLG00000009937 RLG00000009938 RLG00000009940 RLG00000035208 RLG00000035209
rosa_multiflora Rmu_co8281525.1_g000001 Rmu_co8464925.1_g000001 Rmu_sc0000171.1_g000023 Rmu_sc0000171.1_g000027 Rmu_sc0000367.1_g000061 Rmu_sc0000679.1_g000027 Rmu_sc0001380.1_g000026 Rmu_sc0001380.1_g000030 Rmu_sc0001471.1_g000010 Rmu_sc0003643.1_g000007 Rmu_sc0004336.1_g000002 Rmu_sc0004336.1_g000011 Rmu_sc0004336.1_g000012 Rmu_sc0005003.1_g000007 Rmu_sc0005003.1_g000012 Rmu_sc0005003.1_g000016 Rmu_sc0005003.1_g000022 Rmu_sc0008322.1_g000002 Rmu_sc0011197.1_g000004 Rmu_sc0014620.1_g000006 Rmu_sc0014620.1_g000017 Rmu_sc0018617.1_g000002
rosa_roxburghii Rroxscaffold_1G00022270 Rroxscaffold_5G00336180 Rroxscaffold_5G00336220 Rroxscaffold_5G00336240 Rroxscaffold_5G00336250 Rroxscaffold_5G00336290 Rroxscaffold_5G00336310 Rroxscaffold_5G00336350 Rroxscaffold_5G00336370 Rroxscaffold_5G00336670 Rroxscaffold_5G00336700 Rroxscaffold_5G00336710
rosa_rugosa Rorug01G0020300 Rorug03G0327700 Rorug03G0327800 Rorug03G0328000 Rorug03G0328100 Rorug03G0328300 Rorug03G0328600 Rorug03G0328600 Rorug03G0331700 Rorug03G0331800 Rorug05G0312900
rosa_samantha Rh4DG024700 Rh4DG024900 Rh4DG025000 Rh4DG025200 Rh4DG025500 Rh4DG025900 Rh4DG026200 Rh4DG030200 Rh5DG407000
rosa_wichuraiana Rw4G002360 Rw4G002410 Rw4G002420 Rw4G002450 Rw4G002480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 497
AccII CGCG 1 cut(s) 162
AciI CCGC 2 cut(s) 160, 431
AclI AACGTT 1 cut(s) 213
AclWI GGATC 1 cut(s) 47
AcsI RAATTY 1 cut(s) 146
AfaI GTAC 2 cut(s) 63, 192
AfiI CCNNNNNNNGG 1 cut(s) 421
AgsI TTSAA 7 cut(s) 93, 152, 184, 282, 409, 472, 517
AjnI CCWGG 1 cut(s) 271
AjuI GAANNNNNNNTTGG 2 cut(s) 164, 196
AluBI AGCT 2 cut(s) 208, 618
AluI AGCT 2 cut(s) 208, 618
AlwI GGATC 1 cut(s) 47
AlwNI CAGNNNCTG 1 cut(s) 551
AoxI GGCC 1 cut(s) 157
ApeKI GCWGC 1 cut(s) 551
ApoI RAATTY 1 cut(s) 146
ArsI GACNNNNNNTTYG 2 cut(s) 131, 163
AspLEI GCGC 1 cut(s) 88
AspS9I GGNCC 2 cut(s) 157, 594
AsuHPI GGTGA 1 cut(s) 160
AvaII GGWCC 1 cut(s) 594
BaeI ACNNNNGTAYC 2 cut(s) 409, 442
BbvI GCAGC 1 cut(s) 538
BccI CCATC 2 cut(s) 311, 386
BciT130I CCWGG 1 cut(s) 273
BciVI GTATCC 1 cut(s) 437
BfuI GTATCC 1 cut(s) 437
BisI GCNGC 2 cut(s) 160, 552
BlsI GCNGC 2 cut(s) 161, 553
BmcAI AGTACT 1 cut(s) 192
Bme1390I CCNGG 1 cut(s) 273
Bme18I GGWCC 1 cut(s) 594
BmgT120I GGNCC 2 cut(s) 157, 594
BmiI GGNNCC 1 cut(s) 245
BmrFI CCNGG 1 cut(s) 273
BmsI GCATC 1 cut(s) 60
BsaJI CCNNGG 2 cut(s) 271, 539
Bsc4I CCNNNNNNNGG 1 cut(s) 421
Bse3DI GCAATG 1 cut(s) 269
BseBI CCWGG 1 cut(s) 273
BseDI CCNNGG 2 cut(s) 271, 539
BseLI CCNNNNNNNGG 1 cut(s) 421
BseMI GCAATG 1 cut(s) 269
BseMII CTCAG 1 cut(s) 371
BseXI GCAGC 1 cut(s) 538
Bsh1236I CGCG 1 cut(s) 162
BshFI GGCC 1 cut(s) 159
BslI CCNNNNNNNGG 1 cut(s) 421
BsnI GGCC 1 cut(s) 159
Bsp143I GATC 3 cut(s) 6, 52, 454
Bsp19I CCATGG 1 cut(s) 539
BspACI CCGC 2 cut(s) 160, 431
BspANI GGCC 1 cut(s) 159
BspCNI CTCAG 1 cut(s) 372
BspFNI CGCG 1 cut(s) 162
BspLI GGNNCC 1 cut(s) 245
BspPI GGATC 1 cut(s) 47
BsrDI GCAATG 1 cut(s) 269
BssECI CCNNGG 2 cut(s) 271, 539
BssMI GATC 3 cut(s) 6, 52, 454
BssNAI GTATAC 1 cut(s) 498
BssT1I CCWWGG 1 cut(s) 539
Bst1107I GTATAC 1 cut(s) 498
Bst2UI CCWGG 1 cut(s) 273
Bst4CI ACNGT 2 cut(s) 476, 547
Bst6I CTCTTC 2 cut(s) 147, 331
BstC8I GCNNGC 1 cut(s) 100
BstDEI CTNAG 1 cut(s) 380
BstDSI CCRYGG 1 cut(s) 539
BstENI CCTNNNNNAGG 1 cut(s) 419
BstFNI CGCG 1 cut(s) 162
BstHHI GCGC 1 cut(s) 88
BstKTI GATC 3 cut(s) 9, 55, 457
BstMBI GATC 3 cut(s) 6, 52, 454
BstNI CCWGG 1 cut(s) 273
BstSCI CCNGG 1 cut(s) 271
BstUI CGCG 1 cut(s) 162
BstV1I GCAGC 1 cut(s) 538
BstXI CCANNNNNNTGG 1 cut(s) 310
BstZ17I GTATAC 1 cut(s) 498
BsuI GTATCC 1 cut(s) 437
BsuRI GGCC 1 cut(s) 159
BtgI CCRYGG 1 cut(s) 539
BtsIMutI CAGTG 1 cut(s) 481
Cac8I GCNNGC 1 cut(s) 100
CaiI CAGNNNCTG 1 cut(s) 551
CfoI GCGC 1 cut(s) 88
Cfr13I GGNCC 2 cut(s) 157, 594
Csp6I GTAC 2 cut(s) 62, 191
CviAII CATG 3 cut(s) 501, 540, 622
CviJI RGCY 6 cut(s) 159, 208, 379, 509, 581, 618
CviKI_1 RGCY 6 cut(s) 159, 208, 379, 509, 581, 618
CviQI GTAC 2 cut(s) 62, 191
DdeI CTNAG 1 cut(s) 380
DpnI GATC 3 cut(s) 8, 54, 456
DpnII GATC 3 cut(s) 6, 52, 454
Eam1104I CTCTTC 2 cut(s) 147, 331
EarI CTCTTC 2 cut(s) 147, 331
Eco130I CCWWGG 1 cut(s) 539
Eco47I GGWCC 1 cut(s) 594
EcoNI CCTNNNNNAGG 1 cut(s) 419
EcoRII CCWGG 1 cut(s) 271
EcoT14I CCWWGG 1 cut(s) 539
EcoT22I ATGCAT 1 cut(s) 75
ErhI CCWWGG 1 cut(s) 539
FaeI CATG 3 cut(s) 504, 543, 625
FatI CATG 3 cut(s) 500, 539, 621
FauI CCCGC 1 cut(s) 438
FblI GTMKAC 1 cut(s) 497
Fnu4HI GCNGC 2 cut(s) 160, 552
Fsp4HI GCNGC 2 cut(s) 160, 552
GlaI GCGC 1 cut(s) 87
GluI GCNGC 2 cut(s) 160, 552
HaeIII GGCC 1 cut(s) 159
HhaI GCGC 1 cut(s) 88
Hin1II CATG 3 cut(s) 504, 543, 625
Hin6I GCGC 1 cut(s) 86
HinP1I GCGC 1 cut(s) 86
HinfI GANTC 2 cut(s) 108, 230
HphI GGTGA 1 cut(s) 160
Hpy166II GTNNAC 3 cut(s) 38, 498, 594
Hpy188I TCNGA 4 cut(s) 69, 113, 229, 615
Hpy188III TCNNGA 3 cut(s) 56, 241, 517
Hpy8I GTNNAC 3 cut(s) 38, 498, 594
HpyAV CCTTC 1 cut(s) 584
HpyCH4III ACNGT 2 cut(s) 476, 547
HpyCH4IV ACGT 1 cut(s) 213
HpyCH4V TGCA 4 cut(s) 73, 354, 399, 625
HpyF3I CTNAG 1 cut(s) 380
HpySE526I ACGT 1 cut(s) 213
Hsp92II CATG 3 cut(s) 504, 543, 625
HspAI GCGC 1 cut(s) 86
Kzo9I GATC 3 cut(s) 6, 52, 454
LmnI GCTCC 1 cut(s) 615
LpnPI CCDG 8 cut(s) 26, 69, 84, 226, 258, 285, 563, 602
Lsp1109I GCAGC 1 cut(s) 538
LweI GCATC 1 cut(s) 60
MaeII ACGT 1 cut(s) 213
MalI GATC 3 cut(s) 8, 54, 456
MboI GATC 3 cut(s) 6, 52, 454
MboII GAAGA 7 cut(s) 40, 164, 318, 347, 397, 401, 550
MluCI AATT 5 cut(s) 146, 344, 373, 467, 486
MmeI TCCRAC 1 cut(s) 196
MnlI CCTC 3 cut(s) 148, 485, 607
Mph1103I ATGCAT 1 cut(s) 75
MseI TTAA 1 cut(s) 308
MslI CAYNNNNRTG 1 cut(s) 308
MspR9I CCNGG 1 cut(s) 273
MvaI CCWGG 1 cut(s) 273
MvnI CGCG 1 cut(s) 162
NcoI CCATGG 1 cut(s) 539
NdeII GATC 3 cut(s) 6, 52, 454
NlaIII CATG 3 cut(s) 504, 543, 625
NlaIV GGNNCC 1 cut(s) 245
NsiI ATGCAT 1 cut(s) 75
PfeI GAWTC 2 cut(s) 108, 230
PkrI GCNGC 2 cut(s) 161, 553
Psp1406I AACGTT 1 cut(s) 213
Psp6I CCWGG 1 cut(s) 271
PspGI CCWGG 1 cut(s) 271
PspN4I GGNNCC 1 cut(s) 245
PspPI GGNCC 2 cut(s) 157, 594
PstNI CAGNNNCTG 1 cut(s) 551
RsaI GTAC 2 cut(s) 63, 192
RsaNI GTAC 2 cut(s) 62, 191
RseI CAYNNNNRTG 1 cut(s) 308
SaqAI TTAA 1 cut(s) 308
SatI GCNGC 2 cut(s) 160, 552
Sau3AI GATC 3 cut(s) 6, 52, 454
Sau96I GGNCC 2 cut(s) 157, 594
ScaI AGTACT 1 cut(s) 192
ScrFI CCNGG 1 cut(s) 273
SetI ASST 9 cut(s) 210, 216, 249, 373, 417, 568, 591, 599, 620
SfaNI GCATC 1 cut(s) 60
SinI GGWCC 1 cut(s) 594
SmiMI CAYNNNNRTG 1 cut(s) 308
Sse9I AATT 5 cut(s) 146, 344, 373, 467, 486
SsiI CCGC 2 cut(s) 160, 431
StyD4I CCNGG 1 cut(s) 271
StyI CCWWGG 1 cut(s) 539
TaaI ACNGT 2 cut(s) 476, 547
TaiI ACGT 1 cut(s) 216
TaqI TCGA 1 cut(s) 51
TasI AATT 5 cut(s) 146, 344, 373, 467, 486
TatI WGTACW 2 cut(s) 61, 190
TauI GCSGC 1 cut(s) 162
TfiI GAWTC 2 cut(s) 108, 230
Tru1I TTAA 1 cut(s) 308
Tru9I TTAA 1 cut(s) 308
TscAI CASTG 1 cut(s) 481
TseI GCWGC 1 cut(s) 551
TspDTI ATGAA 5 cut(s) 300, 402, 501, 550, 610
TspRI CASTG 1 cut(s) 481
VpaK11BI GGWCC 1 cut(s) 594
XagI CCTNNNNNAGG 1 cut(s) 419
XapI RAATTY 1 cut(s) 146
XcmI CCANNNNNNNNNTGG 1 cut(s) 337
XmiI GTMKAC 1 cut(s) 497
ZrmI AGTACT 1 cut(s) 192
Zsp2I ATGCAT 1 cut(s) 75
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.