RchiOBHm_Chr4g0390711

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000417
Physical Location & Seq
Reverse (-)
6004405 .. 6005487
1083 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36367

Sequence Viewer

Length: 1083 bp
ATGTCCGCAAATCATAGAAGTGGTAGAGATCATACAGGTATCGATATTCTCGATGACCACGAGAAAAGCAAGAAAAGCAAGAAATGCGTCTTCAGAGTTCCTAACGTGCTCTGGAGACAAAATCCAGAAGCATATACACCTGACGTTGTTTCAATCGGACCTTTTCATCATTATCCAGAAAAGCGAGGCAAGGAGGAAGGTAAAGGAGGCAAAGAAGGCAATGGCGAAAAATATTTCCAACTCATGGAACGAGTGAAAACTAGCTATTTGAATGAAATTCTCACCGGTATGAAGAATATTTCTTTGGAAGAGTTGACTACAGAAGTCATTAAGCTCGCAGATAAAAAGAATGAAGGCGAATTTGAGCAACGCGCGCGCGATTTTTATGCAGAACCACTTGATCATATTTCCTCTGAAGAGTTCATCAAGATGATGATAGTTGACGGTTGCTTCCTAATTCAGCTGTTTCGGAAGTGTGACGATCCGAAACTCAGGGCCTTTGATGACCCGGTGTTCAACATGGACTGTATGTTTCATTTCCTATGCCATGACATTTTGCTCCTAGAAAATCAACTACCTTGGTTTGTTATCCACAGTTTGTATAGCCTTATCATTGAAATATACCCAAATCAAGCTTCCCTCTCTATTCTCATCATGAAAGTGCTCAGCGTGCTACCATCACTAAAGAATTGTTGCTCAACCTATAAAACGCATAATTGTGATGCTGATGTTCTGCACATACTTGATCTGGTAAGAGCTTCGATGGTTGAACCATTGATCATAAAGGAGAGATCATGTAGAGCAGTTGGTAGAGAAGCAGAAGATCATCAAATGCATTCTTCGACTCATCAAGGTAATTCTGACTTCAATCCATTTCGAATGCGTGCCGCGACCACTCTCTCAGAGGCAGAAATTAAATTCGGAAGCGACGCAAGTGGATCCATATTGGACATTCATTTTAATAAGGGTTGTGTATGGAATGGGACTCTTGTGATTCCGCAGCTTGACTTTGGAATGTCATCGGAAACATTATTCAGAAACCTCATTGCAATCGAGCAATGCTACCATGGTTATGACTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

360

Amino Acids

41.23

Weight (kDa)

5.81

Isoelectric Point (pI)

45.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 30 - 355 3e-64 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000417)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g32770 FvH4_4g02520 FvH4_4g02520 FvH4_4g02530 FvH4_4g02550 FvH4_4g17730 FvH4_4g17730
rosa_chinensis RchiOBHm_Chr1g0318801 RchiOBHm_Chr4g0390011 RchiOBHm_Chr4g0390031 RchiOBHm_Chr4g0390041 RchiOBHm_Chr4g0390061 RchiOBHm_Chr4g0390091 RchiOBHm_Chr4g0390101 RchiOBHm_Chr4g0390141 RchiOBHm_Chr4g0390181 RchiOBHm_Chr4g0390191 RchiOBHm_Chr4g0390201 RchiOBHm_Chr4g0390231 RchiOBHm_Chr4g0390241 RchiOBHm_Chr4g0390251 RchiOBHm_Chr4g0390661 RchiOBHm_Chr4g0390711 RchiOBHm_Chr4g0390741 RchiOBHm_Chr4g0390771 RchiOBHm_Chr4g0390801 RchiOBHm_Chr5g0058271
rosa_laevigata RLG00000008685 RLG00000009910 RLG00000009930 RLG00000009932 RLG00000009933 RLG00000009934 RLG00000009935 RLG00000009937 RLG00000009938 RLG00000009940 RLG00000035208 RLG00000035209
rosa_multiflora Rmu_co8281525.1_g000001 Rmu_co8464925.1_g000001 Rmu_sc0000171.1_g000023 Rmu_sc0000171.1_g000027 Rmu_sc0000367.1_g000061 Rmu_sc0000679.1_g000027 Rmu_sc0001380.1_g000026 Rmu_sc0001380.1_g000030 Rmu_sc0001471.1_g000010 Rmu_sc0003643.1_g000007 Rmu_sc0004336.1_g000002 Rmu_sc0004336.1_g000011 Rmu_sc0004336.1_g000012 Rmu_sc0005003.1_g000007 Rmu_sc0005003.1_g000012 Rmu_sc0005003.1_g000016 Rmu_sc0005003.1_g000022 Rmu_sc0008322.1_g000002 Rmu_sc0011197.1_g000004 Rmu_sc0014620.1_g000006 Rmu_sc0014620.1_g000017 Rmu_sc0018617.1_g000002
rosa_roxburghii Rroxscaffold_1G00022270 Rroxscaffold_5G00336180 Rroxscaffold_5G00336220 Rroxscaffold_5G00336240 Rroxscaffold_5G00336250 Rroxscaffold_5G00336290 Rroxscaffold_5G00336310 Rroxscaffold_5G00336350 Rroxscaffold_5G00336370 Rroxscaffold_5G00336670 Rroxscaffold_5G00336700 Rroxscaffold_5G00336710
rosa_rugosa Rorug01G0020300 Rorug03G0327700 Rorug03G0327800 Rorug03G0328000 Rorug03G0328100 Rorug03G0328300 Rorug03G0328600 Rorug03G0328600 Rorug03G0331700 Rorug03G0331800 Rorug05G0312900
rosa_samantha Rh4DG024700 Rh4DG024900 Rh4DG025000 Rh4DG025200 Rh4DG025500 Rh4DG025900 Rh4DG026200 Rh4DG030200 Rh5DG407000
rosa_wichuraiana Rw4G002360 Rw4G002410 Rw4G002420 Rw4G002450 Rw4G002480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 244
AccII CGCG 5 cut(s) 372, 374, 376, 378, 890
AciI CCGC 3 cut(s) 6, 888, 998
AclWI GGATC 3 cut(s) 476, 933, 946
AcsI RAATTY 3 cut(s) 276, 359, 917
AcuI CTGAAG 2 cut(s) 76, 435
AfiI CCNNNNNNNGG 1 cut(s) 244
AgeI ACCGGT 1 cut(s) 284
AgsI TTSAA 6 cut(s) 153, 271, 517, 617, 770, 868
AjuI GAANNNNNNNTTGG 4 cut(s) 287, 319, 619, 651
AluBI AGCT 6 cut(s) 264, 334, 463, 635, 758, 1003
AluI AGCT 6 cut(s) 264, 334, 463, 635, 758, 1003
Alw21I GWGCWC 2 cut(s) 111, 666
Alw26I GTCTC 1 cut(s) 109
AlwI GGATC 3 cut(s) 476, 933, 946
AoxI GGCC 1 cut(s) 495
ApeKI GCWGC 1 cut(s) 1000
ApoI RAATTY 3 cut(s) 276, 359, 917
AsiGI ACCGGT 1 cut(s) 284
AspLEI GCGC 3 cut(s) 374, 376, 378
AspS9I GGNCC 2 cut(s) 158, 495
AsuC2I CCSGG 1 cut(s) 509
AsuHPI GGTGA 1 cut(s) 274
AsuII TTCGAA 1 cut(s) 877
AvaII GGWCC 1 cut(s) 158
BamHI GGATCC 1 cut(s) 938
BauI CACGAG 1 cut(s) 59
BbsI GAAGAC 1 cut(s) 82
Bbv12I GWGCWC 2 cut(s) 111, 666
BbvI GCAGC 1 cut(s) 1012
BccI CCATC 2 cut(s) 685, 757
BcgI CGANNNNNNTGC 2 cut(s) 368, 402
BclI TGATCA 2 cut(s) 400, 777
BcnI CCSGG 1 cut(s) 509
BcoDI GTCTC 1 cut(s) 109
BfaI CTAG 2 cut(s) 261, 563
BfmI CTRYAG 1 cut(s) 318
BisI GCNGC 2 cut(s) 888, 1001
BlpI GCTNAGC 1 cut(s) 665
BlsI GCNGC 2 cut(s) 889, 1002
Bme1390I CCNGG 1 cut(s) 509
Bme18I GGWCC 1 cut(s) 158
BmgT120I GGNCC 2 cut(s) 158, 495
BmiI GGNNCC 1 cut(s) 940
BmrFI CCNGG 1 cut(s) 509
BmsI GCATC 1 cut(s) 712
BpiI GAAGAC 1 cut(s) 82
BpmI CTGGAG 1 cut(s) 133
Bpu1102I GCTNAGC 1 cut(s) 665
Bpu14I TTCGAA 1 cut(s) 877
BpuMI CCSGG 1 cut(s) 509
Bsa29I ATCGAT 1 cut(s) 42
BsaJI CCNNGG 2 cut(s) 578, 1066
BsaWI WCCGGW 1 cut(s) 284
Bsc4I CCNNNNNNNGG 1 cut(s) 244
Bse118I RCCGGY 1 cut(s) 284
Bse3DI GCAATG 3 cut(s) 226, 1044, 1064
BseCI ATCGAT 1 cut(s) 42
BseDI CCNNGG 2 cut(s) 578, 1066
BseLI CCNNNNNNNGG 1 cut(s) 244
BseMI GCAATG 3 cut(s) 226, 1044, 1064
BseMII CTCAG 3 cut(s) 505, 679, 915
BsePI GCGCGC 2 cut(s) 372, 374
BseXI GCAGC 1 cut(s) 1012
BsgI GTGCAG 1 cut(s) 719
Bsh1236I CGCG 5 cut(s) 372, 374, 376, 378, 890
BshFI GGCC 1 cut(s) 497
BshTI ACCGGT 1 cut(s) 284
BshVI ATCGAT 1 cut(s) 42
BsiHKAI GWGCWC 2 cut(s) 111, 666
BsiSI CCGG 2 cut(s) 285, 509
BslFI GGGAC 1 cut(s) 997
BslI CCNNNNNNNGG 1 cut(s) 244
BsmAI GTCTC 1 cut(s) 109
BsmFI GGGAC 1 cut(s) 997
BsmI GAATGC 2 cut(s) 835, 885
BsnI GGCC 1 cut(s) 497
Bsp119I TTCGAA 1 cut(s) 877
Bsp1286I GDGCHC 2 cut(s) 111, 666
Bsp143I GATC 8 cut(s) 28, 400, 481, 745, 777, 791, 823, 938
Bsp1720I GCTNAGC 1 cut(s) 665
Bsp19I CCATGG 1 cut(s) 1066
BspACI CCGC 3 cut(s) 6, 888, 998
BspANI GGCC 1 cut(s) 497
BspCNI CTCAG 3 cut(s) 504, 678, 914
BspDI ATCGAT 1 cut(s) 42
BspFNI CGCG 5 cut(s) 372, 374, 376, 378, 890
BspHI TCATGA 1 cut(s) 654
BspLI GGNNCC 1 cut(s) 940
BspPI GGATC 3 cut(s) 476, 933, 946
BspT104I TTCGAA 1 cut(s) 877
BsrDI GCAATG 3 cut(s) 226, 1044, 1064
BsrFI RCCGGY 1 cut(s) 284
BssAI RCCGGY 1 cut(s) 284
BssECI CCNNGG 2 cut(s) 578, 1066
BssHII GCGCGC 2 cut(s) 372, 374
BssMI GATC 8 cut(s) 28, 400, 481, 745, 777, 791, 823, 938
BssSI CACGAG 1 cut(s) 59
BssT1I CCWWGG 2 cut(s) 578, 1066
Bst2BI CACGAG 1 cut(s) 59
Bst4CI ACNGT 3 cut(s) 446, 527, 596
Bst6I CTCTTC 2 cut(s) 303, 411
BstAPI GCANNNNNTGC 1 cut(s) 84
BstBI TTCGAA 1 cut(s) 877
BstC8I GCNNGC 5 cut(s) 336, 374, 376, 671, 885
BstDEI CTNAG 3 cut(s) 491, 665, 901
BstDSI CCRYGG 1 cut(s) 1066
BstFNI CGCG 5 cut(s) 372, 374, 376, 378, 890
BstHHI GCGC 3 cut(s) 374, 376, 378
BstKTI GATC 8 cut(s) 31, 403, 484, 748, 780, 794, 826, 941
BstMAI GTCTC 1 cut(s) 109
BstMBI GATC 8 cut(s) 28, 400, 481, 745, 777, 791, 823, 938
BstMWI GCNNNNNNNGC 5 cut(s) 75, 84, 216, 373, 670
BstSCI CCNGG 1 cut(s) 507
BstSFI CTRYAG 1 cut(s) 318
BstUI CGCG 5 cut(s) 372, 374, 376, 378, 890
BstV1I GCAGC 1 cut(s) 1012
BstV2I GAAGAC 1 cut(s) 82
BstX2I RGATCY 1 cut(s) 938
BstYI RGATCY 1 cut(s) 938
Bsu15I ATCGAT 1 cut(s) 42
BsuRI GGCC 1 cut(s) 497
BsuTUI ATCGAT 1 cut(s) 42
BtgI CCRYGG 1 cut(s) 1066
Cac8I GCNNGC 5 cut(s) 336, 374, 376, 671, 885
CciI TCATGA 1 cut(s) 654
CfoI GCGC 3 cut(s) 374, 376, 378
Cfr10I RCCGGY 1 cut(s) 284
Cfr13I GGNCC 2 cut(s) 158, 495
ClaI ATCGAT 1 cut(s) 42
CseI GACGC 2 cut(s) 76, 938
CspAI ACCGGT 1 cut(s) 284
CviAII CATG 6 cut(s) 244, 520, 548, 655, 795, 1067
CviJI RGCY 8 cut(s) 264, 334, 463, 497, 606, 635, 758, 1003
CviKI_1 RGCY 8 cut(s) 264, 334, 463, 497, 606, 635, 758, 1003
DdeI CTNAG 3 cut(s) 491, 665, 901
DpnI GATC 8 cut(s) 30, 402, 483, 747, 779, 793, 825, 940
DpnII GATC 8 cut(s) 28, 400, 481, 745, 777, 791, 823, 938
Eam1104I CTCTTC 2 cut(s) 303, 411
EarI CTCTTC 2 cut(s) 303, 411
Eco130I CCWWGG 2 cut(s) 578, 1066
Eco47I GGWCC 1 cut(s) 158
Eco57I CTGAAG 2 cut(s) 76, 435
EcoO109I RGGNCCY 1 cut(s) 495
EcoT14I CCWWGG 2 cut(s) 578, 1066
EcoT22I ATGCAT 1 cut(s) 837
ErhI CCWWGG 2 cut(s) 578, 1066
FaeI CATG 6 cut(s) 247, 523, 551, 658, 798, 1070
FaqI GGGAC 1 cut(s) 997
FatI CATG 6 cut(s) 243, 519, 547, 654, 794, 1066
FbaI TGATCA 2 cut(s) 400, 777
Fnu4HI GCNGC 2 cut(s) 888, 1001
Fsp4HI GCNGC 2 cut(s) 888, 1001
FspBI CTAG 2 cut(s) 261, 563
GlaI GCGC 3 cut(s) 373, 375, 377
GluI GCNGC 2 cut(s) 888, 1001
GsuI CTGGAG 1 cut(s) 133
HaeIII GGCC 1 cut(s) 497
HapII CCGG 2 cut(s) 285, 509
HgaI GACGC 2 cut(s) 76, 938
HhaI GCGC 3 cut(s) 374, 376, 378
Hin1II CATG 6 cut(s) 247, 523, 551, 658, 798, 1070
Hin6I GCGC 3 cut(s) 372, 374, 376
HinP1I GCGC 3 cut(s) 372, 374, 376
HincII GTYRAC 2 cut(s) 315, 442
HindII GTYRAC 2 cut(s) 315, 442
HindIII AAGCTT 1 cut(s) 633
HinfI GANTC 3 cut(s) 844, 985, 994
HpaII CCGG 2 cut(s) 285, 509
HphI GGTGA 1 cut(s) 274
Hpy166II GTNNAC 2 cut(s) 315, 442
Hpy188III TCNNGA 6 cut(s) 50, 112, 125, 176, 427, 655
Hpy8I GTNNAC 2 cut(s) 315, 442
Hpy99I CGWCG 1 cut(s) 932
HpyAV CCTTC 3 cut(s) 191, 209, 347
HpyCH4III ACNGT 3 cut(s) 446, 527, 596
HpyCH4IV ACGT 2 cut(s) 105, 144
HpyCH4V TGCA 4 cut(s) 389, 736, 835, 1049
HpyF10VI GCNNNNNNNGC 5 cut(s) 75, 84, 216, 373, 670
HpyF3I CTNAG 3 cut(s) 491, 665, 901
HpySE526I ACGT 2 cut(s) 105, 144
Hsp92II CATG 6 cut(s) 247, 523, 551, 658, 798, 1070
HspAI GCGC 3 cut(s) 372, 374, 376
Ksp22I TGATCA 2 cut(s) 400, 777
Kzo9I GATC 8 cut(s) 28, 400, 481, 745, 777, 791, 823, 938
LmnI GCTCC 1 cut(s) 564
LpnPI CCDG 9 cut(s) 21, 97, 138, 153, 189, 298, 478, 522, 734
Lsp1109I GCAGC 1 cut(s) 1012
LweI GCATC 1 cut(s) 712
MaeI CTAG 2 cut(s) 261, 563
MaeII ACGT 2 cut(s) 105, 144
MaeIII GTNAC 1 cut(s) 476
MalI GATC 8 cut(s) 30, 402, 483, 747, 779, 793, 825, 940
MauBI CGCGCGCG 2 cut(s) 372, 374
MboI GATC 8 cut(s) 28, 400, 481, 745, 777, 791, 823, 938
MboII GAAGA 6 cut(s) 82, 304, 320, 428, 831, 833
MflI RGATCY 1 cut(s) 938
MhlI GDGCHC 2 cut(s) 111, 666
MluCI AATT 8 cut(s) 276, 359, 456, 688, 715, 856, 912, 917
MlyI GAGTC 2 cut(s) 838, 979
MmeI TCCRAC 1 cut(s) 262
MnlI CCTC 7 cut(s) 179, 187, 200, 421, 650, 898, 1052
Mph1103I ATGCAT 1 cut(s) 837
MseI TTAA 3 cut(s) 330, 915, 960
MslI CAYNNNNRTG 6 cut(s) 18, 287, 428, 659, 717, 1071
MspA1I CMGCKG 1 cut(s) 463
MspI CCGG 2 cut(s) 285, 509
MspR9I CCNGG 1 cut(s) 509
Mva1269I GAATGC 2 cut(s) 835, 885
MvnI CGCG 5 cut(s) 372, 374, 376, 378, 890
MwoI GCNNNNNNNGC 5 cut(s) 75, 84, 216, 373, 670
NciI CCSGG 1 cut(s) 509
NcoI CCATGG 1 cut(s) 1066
NdeII GATC 8 cut(s) 28, 400, 481, 745, 777, 791, 823, 938
NlaIII CATG 6 cut(s) 247, 523, 551, 658, 798, 1070
NlaIV GGNNCC 1 cut(s) 940
NmuCI GTSAC 1 cut(s) 476
NsiI ATGCAT 1 cut(s) 837
NspV TTCGAA 1 cut(s) 877
PagI TCATGA 1 cut(s) 654
PauI GCGCGC 2 cut(s) 372, 374
PcsI WCGNNNNNNNCGW 2 cut(s) 48, 57
PctI GAATGC 2 cut(s) 835, 885
PfeI GAWTC 1 cut(s) 994
PflMI CCANNNNNTGG 1 cut(s) 244
PinAI ACCGGT 1 cut(s) 284
PkrI GCNGC 2 cut(s) 889, 1002
PleI GAGTC 2 cut(s) 838, 979
PpsI GAGTC 2 cut(s) 838, 979
PspN4I GGNNCC 1 cut(s) 940
PspPI GGNCC 2 cut(s) 158, 495
PsuI RGATCY 1 cut(s) 938
PteI GCGCGC 2 cut(s) 372, 374
PvuII CAGCTG 1 cut(s) 463
RseI CAYNNNNRTG 6 cut(s) 18, 287, 428, 659, 717, 1071
SaqAI TTAA 3 cut(s) 330, 915, 960
SatI GCNGC 2 cut(s) 888, 1001
Sau3AI GATC 8 cut(s) 28, 400, 481, 745, 777, 791, 823, 938
Sau96I GGNCC 2 cut(s) 158, 495
SchI GAGTC 2 cut(s) 838, 979
ScrFI CCNGG 1 cut(s) 509
SduI GDGCHC 2 cut(s) 111, 666
SfaNI GCATC 1 cut(s) 712
SfcI CTRYAG 1 cut(s) 318
SfuI TTCGAA 1 cut(s) 877
SinI GGWCC 1 cut(s) 158
SmiMI CAYNNNNRTG 6 cut(s) 18, 287, 428, 659, 717, 1071
Sse9I AATT 8 cut(s) 276, 359, 456, 688, 715, 856, 912, 917
SsiI CCGC 3 cut(s) 6, 888, 998
SspI AATATT 2 cut(s) 233, 298
SspMI CTAG 2 cut(s) 261, 563
StyD4I CCNGG 1 cut(s) 507
StyI CCWWGG 2 cut(s) 578, 1066
TaaI ACNGT 3 cut(s) 446, 527, 596
TaiI ACGT 2 cut(s) 108, 147
TaqI TCGA 6 cut(s) 42, 51, 761, 842, 877, 1053
TasI AATT 8 cut(s) 276, 359, 456, 688, 715, 856, 912, 917
TauI GCSGC 1 cut(s) 890
TfiI GAWTC 1 cut(s) 994
Tru1I TTAA 3 cut(s) 330, 915, 960
Tru9I TTAA 3 cut(s) 330, 915, 960
TseFI GTSAC 1 cut(s) 476
TseI GCWGC 1 cut(s) 1000
Tsp45I GTSAC 1 cut(s) 476
TspDTI ATGAA 8 cut(s) 155, 288, 305, 366, 412, 524, 671, 944
Van91I CCANNNNNTGG 1 cut(s) 244
VpaK11BI GGWCC 1 cut(s) 158
XapI RAATTY 3 cut(s) 276, 359, 917
XspI CTAG 2 cut(s) 261, 563
Zsp2I ATGCAT 1 cut(s) 837
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.