Rmu_sc0001380.1_g000026

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001380.1
OG0000417
Physical Location & Seq
Reverse (-)
142997 .. 144412
1416 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001380.1_g000026.1.cds

Sequence Viewer

Length: 1416 bp
atggcgggaaatggtgaaggctgtacagatcatatcgtcatagatgtcgatgatggcaaaatatgcaagaaatgcatcttcaaagttcctatggtgctccggaaacaaaactcagatgcgtatacaccgcacgttgtttcaattggaccttttcatcaagaaggaaacggaggcaaagatgagggcaatacaggcaacaaggaagaatttcaactcatggaacgagtgaaaaagatctatttgaatgaaactctctctcgcatggatactacttttatagacttgaccgcaaaagttactgcgctctcagatcaggggaatgaaggcgaatttgagcaacgagctcgcaattattatgcagaaccacttgatttttcctctgaagagttcatcaagatgatgatagttgacggttgctttctaattcaactgtttcagaagtgtaacgattcaaaactcagggcctttgatgacccggtattcaacatggattgcatgttccagttcctctgccatgaccttttgctcctagagaatcaactaccttggtttgttatccacattttgtatgaccttacccattttttataccctgttgagccctccctctctattctgatccttaaagccttcaccatgattccatcgctgaagcaaagttgctcatcttataatgagcatctccgcagacacaagcatcattctgatgttgattatctgcacatacttgatctggtaagagtatccatagtatttccattaactaccaaagaacagagagagcatagagcagctggaaactctgaagaacatgaagctatctttgacccaaatctacatcaaattcgtaccgcaaccgcactctcaaaggcaaacattaaattcaaaagggtcgaaaaggagagcataatggaaatcaatatcacagagtgtgggtggttcaagaatgcgattcttgagattccacagctaaacgttggaatgtcatcggtaacattattcaggaacctcattgcaattgagcaatgctaccatggttattcaaacgagataacatcttatgccatctttatggataacctcatctcttcagaggaagatatggaattacttcgcaaggaaaaagtaataggtaactcaatgagtgatgaagatggttgtaagtttttcagcaacctttacaaggacgtcccgcacaacaagttctactatgttaagctgtgcaaagacgtgaatgatcattacaaattgaaacggtatacatggttggctttactcaagagtgataagttttctaacccctggaaagctttggcttttgggatagctattatcactttgattctcacctcgtggagctcggcaaaaaacatattcgggttaactggcacaagagaagtttactggctagtctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

471

Amino Acids

54.35

Weight (kDa)

5.88

Isoelectric Point (pI)

44.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000417)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g32770 FvH4_4g02520 FvH4_4g02520 FvH4_4g02530 FvH4_4g02550 FvH4_4g17730 FvH4_4g17730
rosa_chinensis RchiOBHm_Chr1g0318801 RchiOBHm_Chr4g0390011 RchiOBHm_Chr4g0390031 RchiOBHm_Chr4g0390041 RchiOBHm_Chr4g0390061 RchiOBHm_Chr4g0390091 RchiOBHm_Chr4g0390101 RchiOBHm_Chr4g0390141 RchiOBHm_Chr4g0390181 RchiOBHm_Chr4g0390191 RchiOBHm_Chr4g0390201 RchiOBHm_Chr4g0390231 RchiOBHm_Chr4g0390241 RchiOBHm_Chr4g0390251 RchiOBHm_Chr4g0390661 RchiOBHm_Chr4g0390711 RchiOBHm_Chr4g0390741 RchiOBHm_Chr4g0390771 RchiOBHm_Chr4g0390801 RchiOBHm_Chr5g0058271
rosa_laevigata RLG00000008685 RLG00000009910 RLG00000009930 RLG00000009932 RLG00000009933 RLG00000009934 RLG00000009935 RLG00000009937 RLG00000009938 RLG00000009940 RLG00000035208 RLG00000035209
rosa_multiflora Rmu_co8281525.1_g000001 Rmu_co8464925.1_g000001 Rmu_sc0000171.1_g000023 Rmu_sc0000171.1_g000027 Rmu_sc0000367.1_g000061 Rmu_sc0000679.1_g000027 Rmu_sc0001380.1_g000026 Rmu_sc0001380.1_g000030 Rmu_sc0001471.1_g000010 Rmu_sc0003643.1_g000007 Rmu_sc0004336.1_g000002 Rmu_sc0004336.1_g000011 Rmu_sc0004336.1_g000012 Rmu_sc0005003.1_g000007 Rmu_sc0005003.1_g000012 Rmu_sc0005003.1_g000016 Rmu_sc0005003.1_g000022 Rmu_sc0008322.1_g000002 Rmu_sc0011197.1_g000004 Rmu_sc0014620.1_g000006 Rmu_sc0014620.1_g000017 Rmu_sc0018617.1_g000002
rosa_roxburghii Rroxscaffold_1G00022270 Rroxscaffold_5G00336180 Rroxscaffold_5G00336220 Rroxscaffold_5G00336240 Rroxscaffold_5G00336250 Rroxscaffold_5G00336290 Rroxscaffold_5G00336310 Rroxscaffold_5G00336350 Rroxscaffold_5G00336370 Rroxscaffold_5G00336670 Rroxscaffold_5G00336700 Rroxscaffold_5G00336710
rosa_rugosa Rorug01G0020300 Rorug03G0327700 Rorug03G0327800 Rorug03G0328000 Rorug03G0328100 Rorug03G0328300 Rorug03G0328600 Rorug03G0328600 Rorug03G0331700 Rorug03G0331800 Rorug05G0312900
rosa_samantha Rh4DG024700 Rh4DG024900 Rh4DG025000 Rh4DG025200 Rh4DG025500 Rh4DG025900 Rh4DG026200 Rh4DG030200 Rh5DG407000
rosa_wichuraiana Rw4G002360 Rw4G002410 Rw4G002420 Rw4G002450 Rw4G002480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 672
AatII GACGTC 1 cut(s) 1191
AccI GTMKAC 2 cut(s) 122, 1259
AccIII TCCGGA 1 cut(s) 99
AciI CCGC 7 cut(s) 5, 128, 288, 685, 852, 858, 1193
AclI AACGTT 1 cut(s) 975
AclWI GGATC 1 cut(s) 613
AcsI RAATTY 4 cut(s) 206, 329, 843, 881
AcuI CTGAAG 4 cut(s) 402, 671, 825, 1074
AcyI GRCGYC 1 cut(s) 1188
AdeI CACNNNGTG 2 cut(s) 930, 1353
AfaI GTAC 2 cut(s) 25, 850
AfiI CCNNNNNNNGG 1 cut(s) 1183
AjiI CACGTC 1 cut(s) 1231
AjnI CCWGG 1 cut(s) 1301
AloI GAACNNNNNNTCC 2 cut(s) 482, 514
AluBI AGCT 8 cut(s) 344, 794, 818, 970, 1219, 1310, 1328, 1359
AluI AGCT 8 cut(s) 344, 794, 818, 970, 1219, 1310, 1328, 1359
Alw21I GWGCWC 3 cut(s) 99, 346, 1361
AlwI GGATC 1 cut(s) 613
Aor13HI TCCGGA 1 cut(s) 99
AoxI GGCC 1 cut(s) 462
ApeKI GCWGC 1 cut(s) 791
ApoI RAATTY 4 cut(s) 206, 329, 843, 881
Asp700I GAANNNNTTC 2 cut(s) 207, 1110
AspLEI GCGC 1 cut(s) 304
AspS9I GGNCC 2 cut(s) 146, 462
AsuC2I CCSGG 1 cut(s) 476
AsuHPI GGTGA 3 cut(s) 26, 625, 1339
AvaII GGWCC 1 cut(s) 146
BanII GRGCYC 3 cut(s) 346, 603, 1361
BauI CACGAG 1 cut(s) 1351
Bbv12I GWGCWC 3 cut(s) 99, 346, 1361
BbvI GCAGC 1 cut(s) 803
BccI CCATC 4 cut(s) 47, 652, 1073, 1148
BcgI CGANNNNNNTGC 2 cut(s) 326, 360
BciT130I CCWGG 1 cut(s) 1303
BciVI GTATCC 2 cut(s) 259, 754
BclI TGATCA 1 cut(s) 1237
BcnI CCSGG 1 cut(s) 476
BfaI CTAG 3 cut(s) 530, 1409, 1414
BfuI GTATCC 2 cut(s) 259, 754
BglII AGATCT 1 cut(s) 234
BisI GCNGC 1 cut(s) 792
BlsI GCNGC 1 cut(s) 793
Bme1390I CCNGG 2 cut(s) 476, 1303
Bme18I GGWCC 1 cut(s) 146
BmgBI CACGTC 1 cut(s) 1231
BmgT120I GGNCC 2 cut(s) 146, 462
BmiI GGNNCC 1 cut(s) 1007
BmrFI CCNGG 2 cut(s) 476, 1303
BmsI GCATC 4 cut(s) 84, 106, 688, 706
BpuEI CTTGAG 2 cut(s) 977, 1262
BpuMI CCSGG 1 cut(s) 476
BsaHI GRCGYC 1 cut(s) 1188
BsaJI CCNNGG 3 cut(s) 545, 1033, 1301
BsaWI WCCGGW 1 cut(s) 99
Bsc4I CCNNNNNNNGG 1 cut(s) 1183
Bse1I ACTGG 3 cut(s) 502, 1390, 1409
Bse3DI GCAATG 2 cut(s) 1011, 1031
BseAI TCCGGA 1 cut(s) 99
BseBI CCWGG 1 cut(s) 1303
BseDI CCNNGG 3 cut(s) 545, 1033, 1301
BseLI CCNNNNNNNGG 1 cut(s) 1183
BseMI GCAATG 2 cut(s) 1011, 1031
BseMII CTCAG 3 cut(s) 126, 321, 472
BseNI ACTGG 3 cut(s) 502, 1390, 1409
BseXI GCAGC 1 cut(s) 803
BsgI GTGCAG 1 cut(s) 704
BshFI GGCC 1 cut(s) 464
BsiHKAI GWGCWC 3 cut(s) 99, 346, 1361
BsiSI CCGG 2 cut(s) 100, 476
BslFI GGGAC 1 cut(s) 1175
BslI CCNNNNNNNGG 1 cut(s) 1183
BsmFI GGGAC 1 cut(s) 1175
BsmI GAATGC 1 cut(s) 952
BsnI GGCC 1 cut(s) 464
Bsp1286I GDGCHC 4 cut(s) 99, 346, 603, 1361
Bsp13I TCCGGA 1 cut(s) 99
Bsp1407I TGTACA 1 cut(s) 23
Bsp143I GATC 6 cut(s) 28, 234, 310, 618, 730, 1237
Bsp19I CCATGG 1 cut(s) 1033
BspACI CCGC 7 cut(s) 5, 128, 288, 685, 852, 858, 1193
BspANI GGCC 1 cut(s) 464
BspCNI CTCAG 3 cut(s) 125, 320, 471
BspEI TCCGGA 1 cut(s) 99
BspLI GGNNCC 1 cut(s) 1007
BspPI GGATC 1 cut(s) 613
BsrDI GCAATG 2 cut(s) 1011, 1031
BsrGI TGTACA 1 cut(s) 23
BsrI ACTGG 3 cut(s) 502, 1390, 1409
BssECI CCNNGG 3 cut(s) 545, 1033, 1301
BssMI GATC 6 cut(s) 28, 234, 310, 618, 730, 1237
BssNAI GTATAC 2 cut(s) 123, 1260
BssNI GRCGYC 1 cut(s) 1188
BssSI CACGAG 1 cut(s) 1351
BssT1I CCWWGG 2 cut(s) 545, 1033
Bst1107I GTATAC 2 cut(s) 123, 1260
Bst2BI CACGAG 1 cut(s) 1351
Bst2UI CCWGG 1 cut(s) 1303
Bst4CI ACNGT 3 cut(s) 413, 432, 1257
Bst6I CTCTTC 2 cut(s) 378, 1093
BstACI GRCGYC 1 cut(s) 1188
BstAPI GCANNNNNTGC 2 cut(s) 63, 72
BstAUI TGTACA 1 cut(s) 23
BstC8I GCNNGC 1 cut(s) 346
BstDEI CTNAG 3 cut(s) 112, 307, 458
BstDSI CCRYGG 1 cut(s) 1033
BstENI CCTNNNNNAGG 1 cut(s) 1181
BstHHI GCGC 1 cut(s) 304
BstKTI GATC 6 cut(s) 31, 237, 313, 621, 733, 1240
BstMBI GATC 6 cut(s) 28, 234, 310, 618, 730, 1237
BstMWI GCNNNNNNNGC 3 cut(s) 63, 72, 192
BstNI CCWGG 1 cut(s) 1303
BstNSI RCATGY 1 cut(s) 499
BstSCI CCNGG 2 cut(s) 474, 1301
BstV1I GCAGC 1 cut(s) 803
BstX2I RGATCY 1 cut(s) 234
BstXI CCANNNNNNTGG 1 cut(s) 1072
BstYI RGATCY 1 cut(s) 234
BstZ17I GTATAC 2 cut(s) 123, 1260
BsuI GTATCC 2 cut(s) 259, 754
BsuRI GGCC 1 cut(s) 464
BtgI CCRYGG 1 cut(s) 1033
BtgZI GCGATG 1 cut(s) 630
BtrI CACGTC 1 cut(s) 1231
Cac8I GCNNGC 1 cut(s) 346
CfoI GCGC 1 cut(s) 304
Cfr13I GGNCC 2 cut(s) 146, 462
Csp6I GTAC 2 cut(s) 24, 849
CviAII CATG 9 cut(s) 217, 262, 487, 496, 515, 637, 812, 1034, 1263
CviQI GTAC 2 cut(s) 24, 849
DdeI CTNAG 3 cut(s) 112, 307, 458
DpnI GATC 6 cut(s) 30, 236, 312, 620, 732, 1239
DpnII GATC 6 cut(s) 28, 234, 310, 618, 730, 1237
DraIII CACNNNGTG 2 cut(s) 930, 1353
Eam1104I CTCTTC 2 cut(s) 378, 1093
EarI CTCTTC 2 cut(s) 378, 1093
Ecl136II GAGCTC 2 cut(s) 344, 1359
Eco130I CCWWGG 2 cut(s) 545, 1033
Eco24I GRGCYC 3 cut(s) 346, 603, 1361
Eco47I GGWCC 1 cut(s) 146
Eco53kI GAGCTC 2 cut(s) 344, 1359
Eco57I CTGAAG 4 cut(s) 402, 671, 825, 1074
EcoICRI GAGCTC 2 cut(s) 344, 1359
EcoNI CCTNNNNNAGG 1 cut(s) 1181
EcoO109I RGGNCCY 1 cut(s) 462
EcoRII CCWGG 1 cut(s) 1301
EcoT14I CCWWGG 2 cut(s) 545, 1033
EcoT22I ATGCAT 1 cut(s) 77
EcoT38I GRGCYC 3 cut(s) 346, 603, 1361
ErhI CCWWGG 2 cut(s) 545, 1033
FaeI CATG 9 cut(s) 220, 265, 490, 499, 518, 640, 815, 1037, 1266
FaqI GGGAC 1 cut(s) 1175
FatI CATG 9 cut(s) 216, 261, 486, 495, 514, 636, 811, 1033, 1262
FauI CCCGC 1 cut(s) 1200
FbaI TGATCA 1 cut(s) 1237
FblI GTMKAC 2 cut(s) 122, 1259
Fnu4HI GCNGC 1 cut(s) 792
FriOI GRGCYC 3 cut(s) 346, 603, 1361
Fsp4HI GCNGC 1 cut(s) 792
FspBI CTAG 3 cut(s) 530, 1409, 1414
GlaI GCGC 1 cut(s) 303
GluI GCNGC 1 cut(s) 792
HaeIII GGCC 1 cut(s) 464
HapII CCGG 2 cut(s) 100, 476
HhaI GCGC 1 cut(s) 304
Hin1I GRCGYC 1 cut(s) 1188
Hin1II CATG 9 cut(s) 220, 265, 490, 499, 518, 640, 815, 1037, 1266
Hin6I GCGC 1 cut(s) 302
HinP1I GCGC 1 cut(s) 302
HincII GTYRAC 2 cut(s) 409, 1383
HindII GTYRAC 2 cut(s) 409, 1383
HindIII AAGCTT 1 cut(s) 1308
HinfI GANTC 6 cut(s) 449, 535, 640, 952, 961, 1342
HpaI GTTAAC 1 cut(s) 1383
HpaII CCGG 2 cut(s) 100, 476
HphI GGTGA 3 cut(s) 26, 625, 1339
Hpy166II GTNNAC 5 cut(s) 123, 409, 1260, 1383, 1402
Hpy188I TCNGA 8 cut(s) 115, 310, 382, 438, 618, 706, 805, 1093
Hpy188III TCNNGA 7 cut(s) 100, 158, 394, 943, 956, 1003, 1279
Hpy8I GTNNAC 5 cut(s) 123, 409, 1260, 1383, 1402
HpyAV CCTTC 4 cut(s) 11, 155, 317, 640
HpyCH4III ACNGT 3 cut(s) 413, 432, 1257
HpyCH4IV ACGT 4 cut(s) 132, 975, 1188, 1230
HpyCH4V TGCA 7 cut(s) 66, 75, 359, 495, 721, 1016, 1224
HpyF10VI GCNNNNNNNGC 3 cut(s) 63, 72, 192
HpyF3I CTNAG 3 cut(s) 112, 307, 458
HpySE526I ACGT 4 cut(s) 132, 975, 1188, 1230
Hsp92I GRCGYC 1 cut(s) 1188
Hsp92II CATG 9 cut(s) 220, 265, 490, 499, 518, 640, 815, 1037, 1266
HspAI GCGC 1 cut(s) 302
Kpn2I TCCGGA 1 cut(s) 99
Ksp22I TGATCA 1 cut(s) 1237
KspAI GTTAAC 1 cut(s) 1383
Kzo9I GATC 6 cut(s) 28, 234, 310, 618, 730, 1237
LmnI GCTCC 3 cut(s) 102, 531, 1356
Lsp1109I GCAGC 1 cut(s) 803
LweI GCATC 4 cut(s) 84, 106, 688, 706
MaeI CTAG 3 cut(s) 530, 1409, 1414
MaeII ACGT 4 cut(s) 132, 975, 1188, 1230
MaeIII GTNAC 4 cut(s) 295, 443, 991, 1133
MalI GATC 6 cut(s) 30, 236, 312, 620, 732, 1239
MboI GATC 6 cut(s) 28, 234, 310, 618, 730, 1237
MboII GAAGA 7 cut(s) 70, 215, 395, 818, 1080, 1109, 1163
MfeI CAATTG 2 cut(s) 141, 1017
MflI RGATCY 1 cut(s) 234
MhlI GDGCHC 4 cut(s) 99, 346, 603, 1361
MmeI TCCRAC 1 cut(s) 958
Mph1103I ATGCAT 1 cut(s) 77
MroI TCCGGA 1 cut(s) 99
MroXI GAANNNNTTC 2 cut(s) 207, 1110
MseI TTAA 5 cut(s) 624, 761, 879, 1215, 1382
MslI CAYNNNNRTG 3 cut(s) 395, 705, 1070
MspA1I CMGCKG 1 cut(s) 794
MspI CCGG 2 cut(s) 100, 476
MspR9I CCNGG 2 cut(s) 476, 1303
MunI CAATTG 2 cut(s) 141, 1017
Mva1269I GAATGC 1 cut(s) 952
MvaI CCWGG 1 cut(s) 1303
MwoI GCNNNNNNNGC 3 cut(s) 63, 72, 192
NciI CCSGG 1 cut(s) 476
NcoI CCATGG 1 cut(s) 1033
NdeII GATC 6 cut(s) 28, 234, 310, 618, 730, 1237
NlaIII CATG 9 cut(s) 220, 265, 490, 499, 518, 640, 815, 1037, 1266
NlaIV GGNNCC 1 cut(s) 1007
NmeAIII GCCGAG 1 cut(s) 1340
NsiI ATGCAT 1 cut(s) 77
NspI RCATGY 1 cut(s) 499
PctI GAATGC 1 cut(s) 952
PdmI GAANNNNTTC 2 cut(s) 207, 1110
PfeI GAWTC 6 cut(s) 449, 535, 640, 952, 961, 1342
PkrI GCNGC 1 cut(s) 793
PsiI TTATAA 1 cut(s) 672
Psp124BI GAGCTC 2 cut(s) 346, 1361
Psp1406I AACGTT 1 cut(s) 975
Psp6I CCWGG 1 cut(s) 1301
PspGI CCWGG 1 cut(s) 1301
PspN4I GGNNCC 1 cut(s) 1007
PspPI GGNCC 2 cut(s) 146, 462
PsuI RGATCY 1 cut(s) 234
PvuII CAGCTG 1 cut(s) 794
RsaI GTAC 2 cut(s) 25, 850
RsaNI GTAC 2 cut(s) 24, 849
RseI CAYNNNNRTG 3 cut(s) 395, 705, 1070
SacI GAGCTC 2 cut(s) 346, 1361
SaqAI TTAA 5 cut(s) 624, 761, 879, 1215, 1382
SatI GCNGC 1 cut(s) 792
Sau3AI GATC 6 cut(s) 28, 234, 310, 618, 730, 1237
Sau96I GGNCC 2 cut(s) 146, 462
ScrFI CCNGG 2 cut(s) 476, 1303
SduI GDGCHC 4 cut(s) 99, 346, 603, 1361
SfaNI GCATC 4 cut(s) 84, 106, 688, 706
SinI GGWCC 1 cut(s) 146
SmiMI CAYNNNNRTG 3 cut(s) 395, 705, 1070
SmlI CTYRAG 2 cut(s) 956, 1277
SmoI CTYRAG 2 cut(s) 956, 1277
SsiI CCGC 7 cut(s) 5, 128, 288, 685, 852, 858, 1193
SspMI CTAG 3 cut(s) 530, 1409, 1414
SstI GAGCTC 2 cut(s) 346, 1361
StyD4I CCNGG 2 cut(s) 474, 1301
StyI CCWWGG 2 cut(s) 545, 1033
TaaI ACNGT 3 cut(s) 413, 432, 1257
TaiI ACGT 4 cut(s) 135, 978, 1191, 1233
TaqI TCGA 2 cut(s) 48, 894
TatI WGTACW 1 cut(s) 23
TfiI GAWTC 6 cut(s) 449, 535, 640, 952, 961, 1342
Tru1I TTAA 5 cut(s) 624, 761, 879, 1215, 1382
Tru9I TTAA 5 cut(s) 624, 761, 879, 1215, 1382
TseI GCWGC 1 cut(s) 791
TspDTI ATGAA 6 cut(s) 143, 261, 336, 379, 828, 1164
TspGWI ACGGA 1 cut(s) 183
VpaK11BI GGWCC 1 cut(s) 146
XagI CCTNNNNNAGG 1 cut(s) 1181
XapI RAATTY 4 cut(s) 206, 329, 843, 881
XceI RCATGY 1 cut(s) 499
XmiI GTMKAC 2 cut(s) 122, 1259
XmnI GAANNNNTTC 2 cut(s) 207, 1110
XspI CTAG 3 cut(s) 530, 1409, 1414
ZraI GACGTC 1 cut(s) 1189
Zsp2I ATGCAT 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.