RchiOBHm_Chr5g0058271

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000417
Physical Location & Seq
Forward (+)
62471618 .. 62471974
357 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ33497

Sequence Viewer

Length: 357 bp
ATGGAATATACACTGCAACTGCTCTGTCAAAGGCGGGGCAACAAAACAGAAAACATAATGGACATACAATTCGAAGAGGGCTGGCTATTCTGCAATGGAGTTCTTAAGATTCCGCAGCTGAACGTCGGAATGCTAACCGAATCATTATTCAGGAACCTCATAGCTTTTGAGCAATGCTATCATGGTATTTCAAATGAAATAACATCTTACGCAGTGTTTATGGATAACCTCATCTCTTCCCAAGAAGAAATGGAATTACTTTGTAAGGCAAAAGTAATAGGTAACTGGCTGAGCGATGAAGAGGGTTGCAATTTCTTCAACAACCTTTACAAAGGCATCCCGCGCACCAAGTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

118

Amino Acids

13.73

Weight (kDa)

4.82

Isoelectric Point (pI)

38.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 12 - 114 2.5e-29 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000417)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g32770 FvH4_4g02520 FvH4_4g02520 FvH4_4g02530 FvH4_4g02550 FvH4_4g17730 FvH4_4g17730
rosa_chinensis RchiOBHm_Chr1g0318801 RchiOBHm_Chr4g0390011 RchiOBHm_Chr4g0390031 RchiOBHm_Chr4g0390041 RchiOBHm_Chr4g0390061 RchiOBHm_Chr4g0390091 RchiOBHm_Chr4g0390101 RchiOBHm_Chr4g0390141 RchiOBHm_Chr4g0390181 RchiOBHm_Chr4g0390191 RchiOBHm_Chr4g0390201 RchiOBHm_Chr4g0390231 RchiOBHm_Chr4g0390241 RchiOBHm_Chr4g0390251 RchiOBHm_Chr4g0390661 RchiOBHm_Chr4g0390711 RchiOBHm_Chr4g0390741 RchiOBHm_Chr4g0390771 RchiOBHm_Chr4g0390801 RchiOBHm_Chr5g0058271
rosa_laevigata RLG00000008685 RLG00000009910 RLG00000009930 RLG00000009932 RLG00000009933 RLG00000009934 RLG00000009935 RLG00000009937 RLG00000009938 RLG00000009940 RLG00000035208 RLG00000035209
rosa_multiflora Rmu_co8281525.1_g000001 Rmu_co8464925.1_g000001 Rmu_sc0000171.1_g000023 Rmu_sc0000171.1_g000027 Rmu_sc0000367.1_g000061 Rmu_sc0000679.1_g000027 Rmu_sc0001380.1_g000026 Rmu_sc0001380.1_g000030 Rmu_sc0001471.1_g000010 Rmu_sc0003643.1_g000007 Rmu_sc0004336.1_g000002 Rmu_sc0004336.1_g000011 Rmu_sc0004336.1_g000012 Rmu_sc0005003.1_g000007 Rmu_sc0005003.1_g000012 Rmu_sc0005003.1_g000016 Rmu_sc0005003.1_g000022 Rmu_sc0008322.1_g000002 Rmu_sc0011197.1_g000004 Rmu_sc0014620.1_g000006 Rmu_sc0014620.1_g000017 Rmu_sc0018617.1_g000002
rosa_roxburghii Rroxscaffold_1G00022270 Rroxscaffold_5G00336180 Rroxscaffold_5G00336220 Rroxscaffold_5G00336240 Rroxscaffold_5G00336250 Rroxscaffold_5G00336290 Rroxscaffold_5G00336310 Rroxscaffold_5G00336350 Rroxscaffold_5G00336370 Rroxscaffold_5G00336670 Rroxscaffold_5G00336700 Rroxscaffold_5G00336710
rosa_rugosa Rorug01G0020300 Rorug03G0327700 Rorug03G0327800 Rorug03G0328000 Rorug03G0328100 Rorug03G0328300 Rorug03G0328600 Rorug03G0328600 Rorug03G0331700 Rorug03G0331800 Rorug05G0312900
rosa_samantha Rh4DG024700 Rh4DG024900 Rh4DG025000 Rh4DG025200 Rh4DG025500 Rh4DG025900 Rh4DG026200 Rh4DG030200 Rh5DG407000
rosa_wichuraiana Rw4G002360 Rw4G002410 Rw4G002420 Rw4G002450 Rw4G002480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 343
AciI CCGC 3 cut(s) 34, 113, 341
AflII CTTAAG 1 cut(s) 104
AgsI TTSAA 2 cut(s) 192, 319
AluBI AGCT 2 cut(s) 118, 164
AluI AGCT 2 cut(s) 118, 164
ApeKI GCWGC 1 cut(s) 115
ArsI GACNNNNNNTTYG 2 cut(s) 53, 85
AspLEI GCGC 1 cut(s) 345
AsuII TTCGAA 1 cut(s) 72
BbvI GCAGC 1 cut(s) 127
BfaI CTAG 1 cut(s) 355
BfrI CTTAAG 1 cut(s) 104
BisI GCNGC 1 cut(s) 116
BlpI GCTNAGC 1 cut(s) 290
BlsI GCNGC 1 cut(s) 117
BmiI GGNNCC 1 cut(s) 155
BmsI GCATC 1 cut(s) 345
Bpu1102I GCTNAGC 1 cut(s) 290
Bpu14I TTCGAA 1 cut(s) 72
Bse1I ACTGG 1 cut(s) 290
Bse3DI GCAATG 2 cut(s) 100, 179
BseGI GGATG 1 cut(s) 336
BseMI GCAATG 2 cut(s) 100, 179
BseMII CTCAG 1 cut(s) 281
BseNI ACTGG 1 cut(s) 290
BseXI GCAGC 1 cut(s) 127
Bsh1236I CGCG 1 cut(s) 343
BsmI GAATGC 1 cut(s) 135
Bsp119I TTCGAA 1 cut(s) 72
Bsp1720I GCTNAGC 1 cut(s) 290
BspACI CCGC 3 cut(s) 34, 113, 341
BspCNI CTCAG 1 cut(s) 282
BspFNI CGCG 1 cut(s) 343
BspLI GGNNCC 1 cut(s) 155
BspT104I TTCGAA 1 cut(s) 72
BspTI CTTAAG 1 cut(s) 104
BsrDI GCAATG 2 cut(s) 100, 179
BsrI ACTGG 1 cut(s) 290
Bst6I CTCTTC 3 cut(s) 69, 241, 294
BstAFI CTTAAG 1 cut(s) 104
BstBI TTCGAA 1 cut(s) 72
BstC8I GCNNGC 1 cut(s) 83
BstDEI CTNAG 1 cut(s) 290
BstF5I GGATG 1 cut(s) 336
BstFNI CGCG 1 cut(s) 343
BstHHI GCGC 1 cut(s) 345
BstMWI GCNNNNNNNGC 1 cut(s) 342
BstUI CGCG 1 cut(s) 343
BstV1I GCAGC 1 cut(s) 127
BtgZI GCGATG 1 cut(s) 309
BtsCI GGATG 1 cut(s) 336
BtsI GCAGTG 2 cut(s) 11, 219
BtsIMutI CAGTG 2 cut(s) 11, 219
Cac8I GCNNGC 1 cut(s) 83
CfoI GCGC 1 cut(s) 345
CviAII CATG 1 cut(s) 182
CviJI RGCY 5 cut(s) 81, 85, 118, 164, 289
CviKI_1 RGCY 5 cut(s) 81, 85, 118, 164, 289
DdeI CTNAG 1 cut(s) 290
Eam1104I CTCTTC 3 cut(s) 69, 241, 294
EarI CTCTTC 3 cut(s) 69, 241, 294
FaeI CATG 1 cut(s) 185
FaiI YATR 6 cut(s) 9, 56, 65, 161, 183, 221
FatI CATG 1 cut(s) 181
FauI CCCGC 2 cut(s) 27, 348
Fnu4HI GCNGC 1 cut(s) 116
FokI GGATG 1 cut(s) 323
Fsp4HI GCNGC 1 cut(s) 116
FspBI CTAG 1 cut(s) 355
GlaI GCGC 1 cut(s) 344
GluI GCNGC 1 cut(s) 116
HhaI GCGC 1 cut(s) 345
Hin1II CATG 1 cut(s) 185
Hin6I GCGC 1 cut(s) 343
HinP1I GCGC 1 cut(s) 343
HinfI GANTC 2 cut(s) 109, 140
Hpy188I TCNGA 1 cut(s) 128
Hpy188III TCNNGA 1 cut(s) 151
Hpy99I CGWCG 1 cut(s) 128
HpyCH4IV ACGT 1 cut(s) 123
HpyCH4V TGCA 3 cut(s) 16, 93, 309
HpyF10VI GCNNNNNNNGC 1 cut(s) 342
HpyF3I CTNAG 1 cut(s) 290
HpySE526I ACGT 1 cut(s) 123
Hsp92II CATG 1 cut(s) 185
HspAI GCGC 1 cut(s) 343
LpnPI CCDG 3 cut(s) 67, 136, 271
Lsp1109I GCAGC 1 cut(s) 127
LweI GCATC 1 cut(s) 345
MaeI CTAG 1 cut(s) 355
MaeII ACGT 1 cut(s) 123
MaeIII GTNAC 1 cut(s) 281
MboII GAAGA 5 cut(s) 86, 228, 257, 307, 311
MluCI AATT 3 cut(s) 68, 254, 310
MmeI TCCRAC 1 cut(s) 106
MnlI CCTC 4 cut(s) 70, 167, 239, 295
MseI TTAA 1 cut(s) 105
MspA1I CMGCKG 1 cut(s) 118
MspCI CTTAAG 1 cut(s) 104
Mva1269I GAATGC 1 cut(s) 135
MvnI CGCG 1 cut(s) 343
MwoI GCNNNNNNNGC 1 cut(s) 342
NlaIII CATG 1 cut(s) 185
NlaIV GGNNCC 1 cut(s) 155
NspV TTCGAA 1 cut(s) 72
PctI GAATGC 1 cut(s) 135
PfeI GAWTC 2 cut(s) 109, 140
PkrI GCNGC 1 cut(s) 117
PspN4I GGNNCC 1 cut(s) 155
PvuII CAGCTG 1 cut(s) 118
SaqAI TTAA 1 cut(s) 105
SatI GCNGC 1 cut(s) 116
SetI ASST 7 cut(s) 120, 126, 159, 166, 231, 283, 327
SfaNI GCATC 1 cut(s) 345
SfuI TTCGAA 1 cut(s) 72
SgeI CNNG 7 cut(s) 47, 94, 163, 194, 254, 298, 352
SmlI CTYRAG 1 cut(s) 104
SmoI CTYRAG 1 cut(s) 104
Sse9I AATT 3 cut(s) 68, 254, 310
SsiI CCGC 3 cut(s) 34, 113, 341
SspMI CTAG 1 cut(s) 355
TaiI ACGT 1 cut(s) 126
TaqI TCGA 1 cut(s) 72
TasI AATT 3 cut(s) 68, 254, 310
TfiI GAWTC 2 cut(s) 109, 140
Tru1I TTAA 1 cut(s) 105
Tru9I TTAA 1 cut(s) 105
TscAI CASTG 2 cut(s) 18, 219
TseI GCWGC 1 cut(s) 115
TspDTI ATGAA 2 cut(s) 210, 312
TspRI CASTG 2 cut(s) 18, 219
Vha464I CTTAAG 1 cut(s) 104
XspI CTAG 1 cut(s) 355
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.