RLG00000008685

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000417
Physical Location & Seq
Forward (+)
34969423 .. 34970770
1348 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008685

Sequence Viewer

Length: 1224 bp
ATGACTTTGGAAGTGTTGACTGCAACAGTTCAGGAGCGTGAAGTTGGGTTTGAGGAACGAGCCCGCAATTTTTATGCAGAATCACCTGATCATATTACCTCCGAAGAGTTCATGGAAATGATGATAGTTGACGGTTGCTTTCTAGTTCAACTGTTCCGGAAGCAGAACAATTCCAATCTCAGGACCTCTGATGACTCGGTGTTCAACAGGGAGTGTATGTTTGACGAGCTATGCCATGATATCTTGCTCCTAGAGAATCAACTACCTTGGTTTGTTATCAACAGTTTGTATAGCCTTACCCATGAAATATACCCTGGTGAAGCCTCCCTCTCTATTCTCATCTTGAGAGCACTCAGCATACCACTACAACTGAAGCAAGCTTGCTTATCCCATAATAAGCGTCAAGATGCTGATGTTCTGCACATACTTGATCTGGTAAGATCTTCCATAATTATTCCATTATATGAAAGAGCACATAAAGCAGCTGGTAGACCAGCAAAGCATTATCAAATGCATCTCTTGCGAAAAGACTCGAGAGTCAATAAAGCTGCTAAAGAAGCTTTCTATGACCCAAAGCAACATCAAATGCCTACCGCGACAGTTCTTTCAAATGTAGGCATTAAAATACTCCATTCGTCCTTCAGGCAAAGCATATTGGACATACGATTGGATGTGCGCCGGAATATCAGAAAAAGCATAAAGGACATACGATTCAAAGTGCGCTGGAATTTCAGAAATCAGGTAGTTCTCAAGATTCCGCAGCTAAACATAGATAATTTGTTTGAATGTTTATTCAGGAACCTGATTTCTATTGAGCAATGCTACCATGGTTATAATTCTCATGAAATAACATCATATGTCATCTTCATGGATAACCTCATCTCGTCCAAAGAAGATCTGGAACTACTTTGTAAGGAAAAGGTAATTATATCTAATTGGCTAAGCAATGAAGACGGTCGCAAGTTCTTCAAAAGTCTTTATAAGGACATACCGCGGAAGAAGTCCATCAATTTCTACTATGCGGGTCAGTGCAGGGAACTAAATGATAGGTACAATACATTGAAAGAACACCAGCTAGGAGAGAACACGAGACAACAATTGATTTGGTTTTCAAATCCCTGGAACGTTCTTTATGTGATTGTTGGCATTTTCCTTCTGCAGATAGTTCCCACCATACTGCAGACCACATATACCATTAAGCAATACTATTCTCCTAGTCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

408

Amino Acids

47.9

Weight (kDa)

8.63

Isoelectric Point (pI)

55.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 17 - 386 3.6e-69 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000417)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g32770 FvH4_4g02520 FvH4_4g02520 FvH4_4g02530 FvH4_4g02550 FvH4_4g17730 FvH4_4g17730
rosa_chinensis RchiOBHm_Chr1g0318801 RchiOBHm_Chr4g0390011 RchiOBHm_Chr4g0390031 RchiOBHm_Chr4g0390041 RchiOBHm_Chr4g0390061 RchiOBHm_Chr4g0390091 RchiOBHm_Chr4g0390101 RchiOBHm_Chr4g0390141 RchiOBHm_Chr4g0390181 RchiOBHm_Chr4g0390191 RchiOBHm_Chr4g0390201 RchiOBHm_Chr4g0390231 RchiOBHm_Chr4g0390241 RchiOBHm_Chr4g0390251 RchiOBHm_Chr4g0390661 RchiOBHm_Chr4g0390711 RchiOBHm_Chr4g0390741 RchiOBHm_Chr4g0390771 RchiOBHm_Chr4g0390801 RchiOBHm_Chr5g0058271
rosa_laevigata RLG00000008685 RLG00000009910 RLG00000009930 RLG00000009932 RLG00000009933 RLG00000009934 RLG00000009935 RLG00000009937 RLG00000009938 RLG00000009940 RLG00000035208 RLG00000035209
rosa_multiflora Rmu_co8281525.1_g000001 Rmu_co8464925.1_g000001 Rmu_sc0000171.1_g000023 Rmu_sc0000171.1_g000027 Rmu_sc0000367.1_g000061 Rmu_sc0000679.1_g000027 Rmu_sc0001380.1_g000026 Rmu_sc0001380.1_g000030 Rmu_sc0001471.1_g000010 Rmu_sc0003643.1_g000007 Rmu_sc0004336.1_g000002 Rmu_sc0004336.1_g000011 Rmu_sc0004336.1_g000012 Rmu_sc0005003.1_g000007 Rmu_sc0005003.1_g000012 Rmu_sc0005003.1_g000016 Rmu_sc0005003.1_g000022 Rmu_sc0008322.1_g000002 Rmu_sc0011197.1_g000004 Rmu_sc0014620.1_g000006 Rmu_sc0014620.1_g000017 Rmu_sc0018617.1_g000002
rosa_roxburghii Rroxscaffold_1G00022270 Rroxscaffold_5G00336180 Rroxscaffold_5G00336220 Rroxscaffold_5G00336240 Rroxscaffold_5G00336250 Rroxscaffold_5G00336290 Rroxscaffold_5G00336310 Rroxscaffold_5G00336350 Rroxscaffold_5G00336370 Rroxscaffold_5G00336670 Rroxscaffold_5G00336700 Rroxscaffold_5G00336710
rosa_rugosa Rorug01G0020300 Rorug03G0327700 Rorug03G0327800 Rorug03G0328000 Rorug03G0328100 Rorug03G0328300 Rorug03G0328600 Rorug03G0328600 Rorug03G0331700 Rorug03G0331800 Rorug05G0312900
rosa_samantha Rh4DG024700 Rh4DG024900 Rh4DG025000 Rh4DG025200 Rh4DG025500 Rh4DG025900 Rh4DG026200 Rh4DG030200 Rh5DG407000
rosa_wichuraiana Rw4G002360 Rw4G002410 Rw4G002420 Rw4G002450 Rw4G002480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 834, 981
AasI GACNNNNNNGTC 1 cut(s) 536
AccI GTMKAC 1 cut(s) 490
AccII CGCG 2 cut(s) 596, 994
AccIII TCCGGA 1 cut(s) 156
AciI CCGC 6 cut(s) 64, 594, 758, 992, 994, 1022
AclI AACGTT 1 cut(s) 1125
AcsI RAATTY 1 cut(s) 727
AcuI CTGAAG 2 cut(s) 392, 625
AfaI GTAC 1 cut(s) 1052
AfiI CCNNNNNNNGG 1 cut(s) 180
AgsI TTSAA 8 cut(s) 149, 205, 609, 715, 785, 970, 1063, 1113
AjnI CCWGG 2 cut(s) 313, 1118
AluBI AGCT 7 cut(s) 229, 380, 485, 548, 560, 763, 1075
AluI AGCT 7 cut(s) 229, 380, 485, 548, 560, 763, 1075
Alw21I GWGCWC 2 cut(s) 352, 475
Alw26I GTCTC 1 cut(s) 1084
Ama87I CYCGRG 1 cut(s) 532
Aor13HI TCCGGA 1 cut(s) 156
ApeKI GCWGC 3 cut(s) 482, 548, 760
ApoI RAATTY 1 cut(s) 727
AspLEI GCGC 2 cut(s) 678, 723
AspS9I GGNCC 1 cut(s) 183
AsuHPI GGTGA 2 cut(s) 75, 329
AvaI CYCGRG 1 cut(s) 532
AvaII GGWCC 1 cut(s) 183
BanII GRGCYC 1 cut(s) 64
BauI CACGAG 1 cut(s) 1087
BbsI GAAGAC 1 cut(s) 957
Bbv12I GWGCWC 2 cut(s) 352, 475
BbvI GCAGC 3 cut(s) 494, 535, 772
BccI CCATC 1 cut(s) 1013
BciT130I CCWGG 2 cut(s) 315, 1120
BclI TGATCA 1 cut(s) 88
BcoDI GTCTC 1 cut(s) 1084
BfaI CTAG 4 cut(s) 143, 251, 1076, 1215
BfmI CTRYAG 2 cut(s) 1157, 1178
BglII AGATCT 2 cut(s) 440, 895
BisI GCNGC 3 cut(s) 483, 549, 761
BlpI GCTNAGC 1 cut(s) 941
BlsI GCNGC 3 cut(s) 484, 550, 762
Bme1390I CCNGG 2 cut(s) 315, 1120
Bme18I GGWCC 1 cut(s) 183
BmeT110I CYCGRG 1 cut(s) 532
BmgT120I GGNCC 1 cut(s) 183
BmiI GGNNCC 1 cut(s) 800
BmrFI CCNGG 2 cut(s) 315, 1120
BmsI GCATC 2 cut(s) 397, 523
BpiI GAAGAC 1 cut(s) 957
Bpu1102I GCTNAGC 1 cut(s) 941
BpuEI CTTGAG 2 cut(s) 364, 734
BsaJI CCNNGG 5 cut(s) 266, 313, 826, 992, 1118
BsaWI WCCGGW 1 cut(s) 156
BsaXI ACNNNNNCTCC 2 cut(s) 203, 233
Bsc4I CCNNNNNNNGG 1 cut(s) 180
Bse3DI GCAATG 2 cut(s) 824, 952
BseAI TCCGGA 1 cut(s) 156
BseBI CCWGG 2 cut(s) 315, 1120
BseDI CCNNGG 5 cut(s) 266, 313, 826, 992, 1118
BseGI GGATG 1 cut(s) 676
BseLI CCNNNNNNNGG 1 cut(s) 180
BseMI GCAATG 2 cut(s) 824, 952
BseMII CTCAG 2 cut(s) 193, 367
BseXI GCAGC 3 cut(s) 494, 535, 772
BsgI GTGCAG 2 cut(s) 404, 1051
Bsh1236I CGCG 2 cut(s) 596, 994
Bsh1285I CGRYCG 1 cut(s) 958
BsiEI CGRYCG 1 cut(s) 958
BsiHKAI GWGCWC 2 cut(s) 352, 475
BsiHKCI CYCGRG 1 cut(s) 532
BsiSI CCGG 2 cut(s) 157, 679
BslI CCNNNNNNNGG 1 cut(s) 180
BsmAI GTCTC 1 cut(s) 1084
BsoBI CYCGRG 1 cut(s) 532
Bsp1286I GDGCHC 3 cut(s) 64, 352, 475
Bsp13I TCCGGA 1 cut(s) 156
Bsp143I GATC 4 cut(s) 88, 430, 440, 895
Bsp1720I GCTNAGC 1 cut(s) 941
Bsp19I CCATGG 1 cut(s) 826
BspACI CCGC 6 cut(s) 64, 594, 758, 992, 994, 1022
BspCNI CTCAG 2 cut(s) 192, 366
BspEI TCCGGA 1 cut(s) 156
BspFNI CGCG 2 cut(s) 596, 994
BspHI TCATGA 1 cut(s) 841
BspLI GGNNCC 1 cut(s) 800
BspMAI CTGCAG 2 cut(s) 1161, 1182
BsrDI GCAATG 2 cut(s) 824, 952
BssECI CCNNGG 5 cut(s) 266, 313, 826, 992, 1118
BssMI GATC 4 cut(s) 88, 430, 440, 895
BssSI CACGAG 1 cut(s) 1087
BssT1I CCWWGG 2 cut(s) 266, 826
Bst2BI CACGAG 1 cut(s) 1087
Bst2UI CCWGG 2 cut(s) 315, 1120
Bst4CI ACNGT 6 cut(s) 28, 134, 153, 284, 601, 956
Bst6I CTCTTC 1 cut(s) 99
BstAPI GCANNNNNTGC 1 cut(s) 520
BstC8I GCNNGC 3 cut(s) 64, 378, 382
BstDEI CTNAG 4 cut(s) 179, 353, 941, 1221
BstDSI CCRYGG 2 cut(s) 826, 992
BstF5I GGATG 1 cut(s) 676
BstFNI CGCG 2 cut(s) 596, 994
BstHHI GCGC 2 cut(s) 678, 723
BstKTI GATC 4 cut(s) 91, 433, 443, 898
BstMAI GTCTC 1 cut(s) 1084
BstMBI GATC 4 cut(s) 88, 430, 440, 895
BstMCI CGRYCG 1 cut(s) 958
BstMWI GCNNNNNNNGC 3 cut(s) 479, 520, 557
BstNI CCWGG 2 cut(s) 315, 1120
BstSCI CCNGG 2 cut(s) 313, 1118
BstSFI CTRYAG 2 cut(s) 1157, 1178
BstUI CGCG 2 cut(s) 596, 994
BstV1I GCAGC 3 cut(s) 494, 535, 772
BstV2I GAAGAC 1 cut(s) 957
BstX2I RGATCY 2 cut(s) 440, 895
BstYI RGATCY 2 cut(s) 440, 895
BtgI CCRYGG 2 cut(s) 826, 992
BtsCI GGATG 1 cut(s) 676
BtsIMutI CAGTG 1 cut(s) 1034
Cac8I GCNNGC 3 cut(s) 64, 378, 382
CciI TCATGA 1 cut(s) 841
CfoI GCGC 2 cut(s) 678, 723
Cfr13I GGNCC 1 cut(s) 183
Cfr42I CCGCGG 1 cut(s) 995
CseI GACGC 1 cut(s) 389
Csp6I GTAC 1 cut(s) 1051
CviAII CATG 6 cut(s) 112, 236, 302, 827, 842, 868
CviQI GTAC 1 cut(s) 1051
DdeI CTNAG 4 cut(s) 179, 353, 941, 1221
DpnI GATC 4 cut(s) 90, 432, 442, 897
DpnII GATC 4 cut(s) 88, 430, 440, 895
DrdI GACNNNNNNGTC 1 cut(s) 536
DseDI GACNNNNNNGTC 1 cut(s) 536
Eam1104I CTCTTC 1 cut(s) 99
EarI CTCTTC 1 cut(s) 99
Eco130I CCWWGG 2 cut(s) 266, 826
Eco24I GRGCYC 1 cut(s) 64
Eco32I GATATC 1 cut(s) 241
Eco47I GGWCC 1 cut(s) 183
Eco57I CTGAAG 2 cut(s) 392, 625
Eco88I CYCGRG 1 cut(s) 532
EcoO109I RGGNCCY 1 cut(s) 183
EcoRII CCWGG 2 cut(s) 313, 1118
EcoRV GATATC 1 cut(s) 241
EcoT14I CCWWGG 2 cut(s) 266, 826
EcoT22I ATGCAT 1 cut(s) 516
EcoT38I GRGCYC 1 cut(s) 64
ErhI CCWWGG 2 cut(s) 266, 826
FaeI CATG 6 cut(s) 115, 239, 305, 830, 845, 871
FatI CATG 6 cut(s) 111, 235, 301, 826, 841, 867
FauI CCCGC 2 cut(s) 71, 1015
FauNDI CATATG 1 cut(s) 856
FbaI TGATCA 1 cut(s) 88
FblI GTMKAC 1 cut(s) 490
Fnu4HI GCNGC 3 cut(s) 483, 549, 761
FokI GGATG 1 cut(s) 683
FriOI GRGCYC 1 cut(s) 64
Fsp4HI GCNGC 3 cut(s) 483, 549, 761
FspBI CTAG 4 cut(s) 143, 251, 1076, 1215
GlaI GCGC 2 cut(s) 677, 722
GluI GCNGC 3 cut(s) 483, 549, 761
HapII CCGG 2 cut(s) 157, 679
HgaI GACGC 1 cut(s) 389
HhaI GCGC 2 cut(s) 678, 723
Hin1II CATG 6 cut(s) 115, 239, 305, 830, 845, 871
Hin6I GCGC 2 cut(s) 676, 721
HinP1I GCGC 2 cut(s) 676, 721
HincII GTYRAC 2 cut(s) 18, 130
HindII GTYRAC 2 cut(s) 18, 130
HindIII AAGCTT 2 cut(s) 378, 558
HinfI GANTC 7 cut(s) 80, 194, 256, 530, 537, 711, 754
HpaII CCGG 2 cut(s) 157, 679
HphI GGTGA 2 cut(s) 75, 329
Hpy166II GTNNAC 3 cut(s) 18, 130, 491
Hpy188I TCNGA 4 cut(s) 103, 190, 689, 734
Hpy8I GTNNAC 3 cut(s) 18, 130, 491
HpyAV CCTTC 2 cut(s) 649, 1163
HpyCH4III ACNGT 6 cut(s) 28, 134, 153, 284, 601, 956
HpyCH4IV ACGT 1 cut(s) 1125
HpyCH4V TGCA 7 cut(s) 23, 77, 421, 514, 1032, 1159, 1180
HpyF10VI GCNNNNNNNGC 3 cut(s) 479, 520, 557
HpyF3I CTNAG 4 cut(s) 179, 353, 941, 1221
HpySE526I ACGT 1 cut(s) 1125
Hsp92II CATG 6 cut(s) 115, 239, 305, 830, 845, 871
HspAI GCGC 2 cut(s) 676, 721
Kpn2I TCCGGA 1 cut(s) 156
Ksp22I TGATCA 1 cut(s) 88
KspI CCGCGG 1 cut(s) 995
Kzo9I GATC 4 cut(s) 88, 430, 440, 895
LmnI GCTCC 2 cut(s) 34, 252
Lsp1109I GCAGC 3 cut(s) 494, 535, 772
LweI GCATC 2 cut(s) 397, 523
MaeI CTAG 4 cut(s) 143, 251, 1076, 1215
MaeII ACGT 1 cut(s) 1125
MalI GATC 4 cut(s) 90, 432, 442, 897
MboI GATC 4 cut(s) 88, 430, 440, 895
MboII GAAGA 7 cut(s) 116, 435, 856, 905, 958, 962, 1009
MfeI CAATTG 1 cut(s) 1097
MflI RGATCY 2 cut(s) 440, 895
MhlI GDGCHC 3 cut(s) 64, 352, 475
MlyI GAGTC 3 cut(s) 188, 524, 546
MnlI CCTC 6 cut(s) 46, 109, 196, 334, 338, 887
Mph1103I ATGCAT 1 cut(s) 516
MroI TCCGGA 1 cut(s) 156
MseI TTAA 2 cut(s) 621, 1197
MslI CAYNNNNRTG 2 cut(s) 116, 866
MspA1I CMGCKG 2 cut(s) 485, 994
MspI CCGG 2 cut(s) 157, 679
MspR9I CCNGG 2 cut(s) 315, 1120
MunI CAATTG 1 cut(s) 1097
MvaI CCWGG 2 cut(s) 315, 1120
MvnI CGCG 2 cut(s) 596, 994
MwoI GCNNNNNNNGC 3 cut(s) 479, 520, 557
NcoI CCATGG 1 cut(s) 826
NdeI CATATG 1 cut(s) 856
NdeII GATC 4 cut(s) 88, 430, 440, 895
NlaIII CATG 6 cut(s) 115, 239, 305, 830, 845, 871
NlaIV GGNNCC 1 cut(s) 800
NsiI ATGCAT 1 cut(s) 516
PaeR7I CTCGAG 1 cut(s) 532
PagI TCATGA 1 cut(s) 841
PfeI GAWTC 4 cut(s) 80, 256, 711, 754
PkrI GCNGC 3 cut(s) 484, 550, 762
PleI GAGTC 3 cut(s) 188, 524, 545
PpsI GAGTC 3 cut(s) 188, 524, 545
PpuMI RGGWCCY 1 cut(s) 183
PsiI TTATAA 2 cut(s) 834, 981
Psp1406I AACGTT 1 cut(s) 1125
Psp5II RGGWCCY 1 cut(s) 183
Psp6I CCWGG 2 cut(s) 313, 1118
PspGI CCWGG 2 cut(s) 313, 1118
PspN4I GGNNCC 1 cut(s) 800
PspPI GGNCC 1 cut(s) 183
PspPPI RGGWCCY 1 cut(s) 183
PstI CTGCAG 2 cut(s) 1161, 1182
PsuI RGATCY 2 cut(s) 440, 895
PvuII CAGCTG 1 cut(s) 485
RsaI GTAC 1 cut(s) 1052
RsaNI GTAC 1 cut(s) 1051
RseI CAYNNNNRTG 2 cut(s) 116, 866
SacII CCGCGG 1 cut(s) 995
SaqAI TTAA 2 cut(s) 621, 1197
SatI GCNGC 3 cut(s) 483, 549, 761
Sau3AI GATC 4 cut(s) 88, 430, 440, 895
Sau96I GGNCC 1 cut(s) 183
SchI GAGTC 3 cut(s) 188, 524, 546
ScrFI CCNGG 2 cut(s) 315, 1120
SduI GDGCHC 3 cut(s) 64, 352, 475
SfaNI GCATC 2 cut(s) 397, 523
SfcI CTRYAG 2 cut(s) 1157, 1178
Sfr274I CTCGAG 1 cut(s) 532
Sfr303I CCGCGG 1 cut(s) 995
SgrBI CCGCGG 1 cut(s) 995
SinI GGWCC 1 cut(s) 183
SlaI CTCGAG 1 cut(s) 532
SmiMI CAYNNNNRTG 2 cut(s) 116, 866
SmlI CTYRAG 3 cut(s) 343, 532, 749
SmoI CTYRAG 3 cut(s) 343, 532, 749
SsiI CCGC 6 cut(s) 64, 594, 758, 992, 994, 1022
SspMI CTAG 4 cut(s) 143, 251, 1076, 1215
StyD4I CCNGG 2 cut(s) 313, 1118
StyI CCWWGG 2 cut(s) 266, 826
TaaI ACNGT 6 cut(s) 28, 134, 153, 284, 601, 956
TaiI ACGT 1 cut(s) 1128
TaqI TCGA 1 cut(s) 533
TfiI GAWTC 4 cut(s) 80, 256, 711, 754
Tru1I TTAA 2 cut(s) 621, 1197
Tru9I TTAA 2 cut(s) 621, 1197
TscAI CASTG 1 cut(s) 1034
TseI GCWGC 3 cut(s) 482, 548, 760
TspDTI ATGAA 6 cut(s) 100, 318, 480, 856, 858, 963
TspRI CASTG 1 cut(s) 1034
VpaK11BI GGWCC 1 cut(s) 183
XapI RAATTY 1 cut(s) 727
XcmI CCANNNNNNNNNTGG 1 cut(s) 895
XhoI CTCGAG 1 cut(s) 532
XmiI GTMKAC 1 cut(s) 490
XspI CTAG 4 cut(s) 143, 251, 1076, 1215
Zsp2I ATGCAT 1 cut(s) 516
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.