Rroxscaffold_5G00336310

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000417
Physical Location & Seq
Reverse (-)
4112707 .. 4113846
1140 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00336310.1

Sequence Viewer

Length: 1140 bp
ATGAAGGCGAATTCGAGCAACGCGCGCGCTTTTTATGCAGAACCACTTGATGATCATATTTCCTCTGAAGAGTTTATCAAGATGATGATAGTTGACGGTTGCTTCCTAATTCAACTGTTTCGGAAGTGTAACGATCCGAAACTCAGGGCCTTTGATGACCCCGTGTTCAACATGGACTGTATGTTTCATTTCCTATGCCATGACATTTTGCTCCTAGAAAATCAATTACCTTGGTTTGTTATCCACAGTTTGTATAGCCTTATCATTGAAGAATACCCTAATCAAGCCTTCCTCTCTACTCTCATCCTTGAAGCCTTCAGCATGCTACCATCATTGAAGCAAAGTTGCTCATCTTATAATAAGCATCTCCGCAGAAACAAGTGTTTTTGTGATGCTGATTATCTGCATATACTTGATCTGGTAAGAAATTCCATAGTAATTCCATCAGGGACCAAAGCGGCTGGAAAAGAATCTATGTCCAACCCTGAAGAACATGAAGTTGACTCTGGGAACAAACACGAGAGAAACAATAAAGTTGTTCATGAAGCTACCATTGACCCAGATTCACATCAAATTCGTACCGCAACCGCTCTCTCAAAGGCAGATATTAAATTCGAAAGCGTAGAAAAGGAGAGCATATTGGACATCCATTTCGAAACGGGCGGGTGTTTCAGGAATGGGATTCTTAAGATTCCACTGCTAAACGTTGGAATGTCATCGGAAACATTATTCAGGAACCTCATTGCAATCGAGCAATGCTACCATGGTTATTCAAACGAGGTTACATCTTATGCCATCTTTATGGATAACCTCATCTCTTCAAAGGAAGATATGGAATTACTTTGCAAGCAAAAAGTAATAGGCAACTTGATGAGTGACGAAGATGGTTGTAAGTTCTTCAACAACCTTTACAAGGACATCCCGCACAACAAATTCTCGCACAACAAATTCTACTATAGTGCTCTTTGCAAGCAGGTGAATGATCGTTACCAACTGAGACGGTATACATGGTTGGCTTTACTCAAGATTGAAAAGTTTTCTAACCCCTGGAGACTTTTGGCTTTCGGGATAGCTATTATCGCTTTGTTTCTCACCTCGTGGAGCTCGGCAAACAACATTCGGGTTAACTGGCATAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

379

Amino Acids

43.8

Weight (kDa)

6.31

Isoelectric Point (pI)

51.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 3 - 364 1.3e-79 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000417)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g32770 FvH4_4g02520 FvH4_4g02520 FvH4_4g02530 FvH4_4g02550 FvH4_4g17730 FvH4_4g17730
rosa_chinensis RchiOBHm_Chr1g0318801 RchiOBHm_Chr4g0390011 RchiOBHm_Chr4g0390031 RchiOBHm_Chr4g0390041 RchiOBHm_Chr4g0390061 RchiOBHm_Chr4g0390091 RchiOBHm_Chr4g0390101 RchiOBHm_Chr4g0390141 RchiOBHm_Chr4g0390181 RchiOBHm_Chr4g0390191 RchiOBHm_Chr4g0390201 RchiOBHm_Chr4g0390231 RchiOBHm_Chr4g0390241 RchiOBHm_Chr4g0390251 RchiOBHm_Chr4g0390661 RchiOBHm_Chr4g0390711 RchiOBHm_Chr4g0390741 RchiOBHm_Chr4g0390771 RchiOBHm_Chr4g0390801 RchiOBHm_Chr5g0058271
rosa_laevigata RLG00000008685 RLG00000009910 RLG00000009930 RLG00000009932 RLG00000009933 RLG00000009934 RLG00000009935 RLG00000009937 RLG00000009938 RLG00000009940 RLG00000035208 RLG00000035209
rosa_multiflora Rmu_co8281525.1_g000001 Rmu_co8464925.1_g000001 Rmu_sc0000171.1_g000023 Rmu_sc0000171.1_g000027 Rmu_sc0000367.1_g000061 Rmu_sc0000679.1_g000027 Rmu_sc0001380.1_g000026 Rmu_sc0001380.1_g000030 Rmu_sc0001471.1_g000010 Rmu_sc0003643.1_g000007 Rmu_sc0004336.1_g000002 Rmu_sc0004336.1_g000011 Rmu_sc0004336.1_g000012 Rmu_sc0005003.1_g000007 Rmu_sc0005003.1_g000012 Rmu_sc0005003.1_g000016 Rmu_sc0005003.1_g000022 Rmu_sc0008322.1_g000002 Rmu_sc0011197.1_g000004 Rmu_sc0014620.1_g000006 Rmu_sc0014620.1_g000017 Rmu_sc0018617.1_g000002
rosa_roxburghii Rroxscaffold_1G00022270 Rroxscaffold_5G00336180 Rroxscaffold_5G00336220 Rroxscaffold_5G00336240 Rroxscaffold_5G00336250 Rroxscaffold_5G00336290 Rroxscaffold_5G00336310 Rroxscaffold_5G00336350 Rroxscaffold_5G00336370 Rroxscaffold_5G00336670 Rroxscaffold_5G00336700 Rroxscaffold_5G00336710
rosa_rugosa Rorug01G0020300 Rorug03G0327700 Rorug03G0327800 Rorug03G0328000 Rorug03G0328100 Rorug03G0328300 Rorug03G0328600 Rorug03G0328600 Rorug03G0331700 Rorug03G0331800 Rorug05G0312900
rosa_samantha Rh4DG024700 Rh4DG024900 Rh4DG025000 Rh4DG025200 Rh4DG025500 Rh4DG025900 Rh4DG026200 Rh4DG030200 Rh5DG407000
rosa_wichuraiana Rw4G002360 Rw4G002410 Rw4G002420 Rw4G002450 Rw4G002480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 357
AarI CACCTGC 1 cut(s) 964
Acc36I ACCTGC 1 cut(s) 964
AccBSI CCGCTC 1 cut(s) 590
AccI GTMKAC 1 cut(s) 1004
AccII CGCG 3 cut(s) 23, 25, 27
AciI CCGC 6 cut(s) 370, 458, 582, 588, 663, 923
AclI AACGTT 1 cut(s) 705
AclWI GGATC 1 cut(s) 128
AcsI RAATTY 6 cut(s) 10, 427, 573, 611, 932, 947
AcuI CTGAAG 3 cut(s) 87, 301, 507
AdeI CACNNNGTG 1 cut(s) 1098
AfaI GTAC 1 cut(s) 580
AfiI CCNNNNNNNGG 1 cut(s) 913
AflII CTTAAG 1 cut(s) 686
AgsI TTSAA 9 cut(s) 113, 169, 269, 311, 337, 774, 822, 901, 1031
AjnI CCWGG 1 cut(s) 1046
AluBI AGCT 3 cut(s) 548, 1073, 1104
AluI AGCT 3 cut(s) 548, 1073, 1104
Alw21I GWGCWC 2 cut(s) 964, 1106
Alw26I GTCTC 2 cut(s) 991, 1045
AlwI GGATC 1 cut(s) 128
AoxI GGCC 1 cut(s) 147
ApoI RAATTY 6 cut(s) 10, 427, 573, 611, 932, 947
ArsI GACNNNNNNTTYG 2 cut(s) 635, 667
AspLEI GCGC 3 cut(s) 25, 27, 29
AspS9I GGNCC 2 cut(s) 147, 450
AsuHPI GGTGA 2 cut(s) 988, 1084
AsuII TTCGAA 2 cut(s) 615, 654
AvaII GGWCC 1 cut(s) 450
BanII GRGCYC 1 cut(s) 1106
BauI CACGAG 2 cut(s) 518, 1096
Bbv12I GWGCWC 2 cut(s) 964, 1106
BccI CCATC 4 cut(s) 337, 451, 803, 878
BciT130I CCWGG 1 cut(s) 1048
BclI TGATCA 1 cut(s) 52
BcoDI GTCTC 2 cut(s) 991, 1045
BfaI CTAG 1 cut(s) 215
BfmI CTRYAG 1 cut(s) 955
BfrI CTTAAG 1 cut(s) 686
BfuAI ACCTGC 1 cut(s) 964
BisI GCNGC 1 cut(s) 459
BlsI GCNGC 1 cut(s) 460
Bme1390I CCNGG 1 cut(s) 1048
Bme18I GGWCC 1 cut(s) 450
BmgT120I GGNCC 2 cut(s) 147, 450
BmiI GGNNCC 2 cut(s) 451, 737
BmrFI CCNGG 1 cut(s) 1048
BmsI GCATC 2 cut(s) 373, 382
BpmI CTGGAG 1 cut(s) 1069
Bpu14I TTCGAA 2 cut(s) 615, 654
BpuEI CTTGAG 1 cut(s) 1007
BsaBI GATNNNNATC 1 cut(s) 567
BsaJI CCNNGG 3 cut(s) 230, 763, 1046
Bsc4I CCNNNNNNNGG 1 cut(s) 913
Bse1I ACTGG 1 cut(s) 1133
Bse3DI GCAATG 2 cut(s) 741, 761
Bse8I GATNNNNATC 1 cut(s) 567
BseBI CCWGG 1 cut(s) 1048
BseDI CCNNGG 3 cut(s) 230, 763, 1046
BseGI GGATG 3 cut(s) 303, 645, 918
BseJI GATNNNNATC 1 cut(s) 567
BseLI CCNNNNNNNGG 1 cut(s) 913
BseMI GCAATG 2 cut(s) 741, 761
BseMII CTCAG 2 cut(s) 157, 986
BseNI ACTGG 1 cut(s) 1133
BsePI GCGCGC 2 cut(s) 23, 25
Bsh1236I CGCG 3 cut(s) 23, 25, 27
BshFI GGCC 1 cut(s) 149
BsiHKAI GWGCWC 2 cut(s) 964, 1106
BslFI GGGAC 1 cut(s) 463
BslI CCNNNNNNNGG 1 cut(s) 913
BsmAI GTCTC 2 cut(s) 991, 1045
BsmBI CGTCTC 1 cut(s) 991
BsmFI GGGAC 1 cut(s) 463
BsnI GGCC 1 cut(s) 149
Bsp119I TTCGAA 2 cut(s) 615, 654
Bsp1286I GDGCHC 2 cut(s) 964, 1106
Bsp143I GATC 4 cut(s) 52, 133, 415, 982
Bsp19I CCATGG 1 cut(s) 763
BspACI CCGC 6 cut(s) 370, 458, 582, 588, 663, 923
BspANI GGCC 1 cut(s) 149
BspCNI CTCAG 2 cut(s) 156, 987
BspFNI CGCG 3 cut(s) 23, 25, 27
BspHI TCATGA 1 cut(s) 541
BspLI GGNNCC 2 cut(s) 451, 737
BspMI ACCTGC 1 cut(s) 964
BspPI GGATC 1 cut(s) 128
BspT104I TTCGAA 2 cut(s) 615, 654
BspTI CTTAAG 1 cut(s) 686
BsrBI CCGCTC 1 cut(s) 590
BsrDI GCAATG 2 cut(s) 741, 761
BsrI ACTGG 1 cut(s) 1133
BssECI CCNNGG 3 cut(s) 230, 763, 1046
BssHII GCGCGC 2 cut(s) 23, 25
BssMI GATC 4 cut(s) 52, 133, 415, 982
BssNAI GTATAC 1 cut(s) 1005
BssSI CACGAG 2 cut(s) 518, 1096
BssT1I CCWWGG 2 cut(s) 230, 763
Bst1107I GTATAC 1 cut(s) 1005
Bst2BI CACGAG 2 cut(s) 518, 1096
Bst2UI CCWGG 1 cut(s) 1048
Bst4CI ACNGT 5 cut(s) 98, 117, 179, 248, 1002
Bst6I CTCTTC 2 cut(s) 63, 823
BstAFI CTTAAG 1 cut(s) 686
BstBI TTCGAA 2 cut(s) 615, 654
BstC8I GCNNGC 5 cut(s) 25, 27, 323, 848, 971
BstDEI CTNAG 2 cut(s) 143, 995
BstDSI CCRYGG 1 cut(s) 763
BstENI CCTNNNNNAGG 1 cut(s) 911
BstF5I GGATG 3 cut(s) 303, 645, 918
BstFNI CGCG 3 cut(s) 23, 25, 27
BstHHI GCGC 3 cut(s) 25, 27, 29
BstKTI GATC 4 cut(s) 55, 136, 418, 985
BstMAI GTCTC 2 cut(s) 991, 1045
BstMBI GATC 4 cut(s) 52, 133, 415, 982
BstMWI GCNNNNNNNGC 3 cut(s) 24, 35, 1079
BstNI CCWGG 1 cut(s) 1048
BstNSI RCATGY 1 cut(s) 325
BstSCI CCNGG 1 cut(s) 1046
BstSFI CTRYAG 1 cut(s) 955
BstUI CGCG 3 cut(s) 23, 25, 27
BstXI CCANNNNNNTGG 1 cut(s) 802
BstZ17I GTATAC 1 cut(s) 1005
BsuRI GGCC 1 cut(s) 149
BtgI CCRYGG 1 cut(s) 763
BtsCI GGATG 3 cut(s) 303, 645, 918
BtsI GCAGTG 1 cut(s) 695
BtsIMutI CAGTG 1 cut(s) 695
BveI ACCTGC 1 cut(s) 964
Cac8I GCNNGC 5 cut(s) 25, 27, 323, 848, 971
CciI TCATGA 1 cut(s) 541
CfoI GCGC 3 cut(s) 25, 27, 29
Cfr13I GGNCC 2 cut(s) 147, 450
Csp6I GTAC 1 cut(s) 579
CviAII CATG 7 cut(s) 172, 200, 322, 494, 542, 764, 1008
CviQI GTAC 1 cut(s) 579
DdeI CTNAG 2 cut(s) 143, 995
DpnI GATC 4 cut(s) 54, 135, 417, 984
DpnII GATC 4 cut(s) 52, 133, 415, 982
DraIII CACNNNGTG 1 cut(s) 1098
Eam1104I CTCTTC 2 cut(s) 63, 823
EarI CTCTTC 2 cut(s) 63, 823
Ecl136II GAGCTC 1 cut(s) 1104
Eco130I CCWWGG 2 cut(s) 230, 763
Eco24I GRGCYC 1 cut(s) 1106
Eco47I GGWCC 1 cut(s) 450
Eco53kI GAGCTC 1 cut(s) 1104
Eco57I CTGAAG 3 cut(s) 87, 301, 507
EcoICRI GAGCTC 1 cut(s) 1104
EcoNI CCTNNNNNAGG 1 cut(s) 911
EcoO109I RGGNCCY 1 cut(s) 147
EcoRI GAATTC 1 cut(s) 10
EcoRII CCWGG 1 cut(s) 1046
EcoT14I CCWWGG 2 cut(s) 230, 763
EcoT38I GRGCYC 1 cut(s) 1106
ErhI CCWWGG 2 cut(s) 230, 763
Esp3I CGTCTC 1 cut(s) 991
FaeI CATG 7 cut(s) 175, 203, 325, 497, 545, 767, 1011
FaqI GGGAC 1 cut(s) 463
FatI CATG 7 cut(s) 171, 199, 321, 493, 541, 763, 1007
FauI CCCGC 2 cut(s) 656, 930
FbaI TGATCA 1 cut(s) 52
FblI GTMKAC 1 cut(s) 1004
Fnu4HI GCNGC 1 cut(s) 459
FokI GGATG 3 cut(s) 290, 632, 905
FriOI GRGCYC 1 cut(s) 1106
Fsp4HI GCNGC 1 cut(s) 459
FspBI CTAG 1 cut(s) 215
GlaI GCGC 3 cut(s) 24, 26, 28
GluI GCNGC 1 cut(s) 459
GsuI CTGGAG 1 cut(s) 1069
HaeIII GGCC 1 cut(s) 149
HhaI GCGC 3 cut(s) 25, 27, 29
Hin1II CATG 7 cut(s) 175, 203, 325, 497, 545, 767, 1011
Hin6I GCGC 3 cut(s) 23, 25, 27
HinP1I GCGC 3 cut(s) 23, 25, 27
HincII GTYRAC 3 cut(s) 94, 502, 1126
HindII GTYRAC 3 cut(s) 94, 502, 1126
HinfI GANTC 5 cut(s) 470, 503, 563, 682, 691
HpaI GTTAAC 1 cut(s) 1126
HphI GGTGA 2 cut(s) 988, 1084
Hpy166II GTNNAC 4 cut(s) 94, 502, 1005, 1126
Hpy188I TCNGA 4 cut(s) 67, 123, 138, 721
Hpy188III TCNNGA 6 cut(s) 79, 542, 673, 733, 1024, 1066
Hpy8I GTNNAC 4 cut(s) 94, 502, 1005, 1126
HpyAV CCTTC 2 cut(s) 298, 325
HpyCH4III ACNGT 5 cut(s) 98, 117, 179, 248, 1002
HpyCH4IV ACGT 1 cut(s) 705
HpyCH4V TGCA 5 cut(s) 38, 406, 746, 846, 969
HpyF10VI GCNNNNNNNGC 3 cut(s) 24, 35, 1079
HpyF3I CTNAG 2 cut(s) 143, 995
HpySE526I ACGT 1 cut(s) 705
Hsp92II CATG 7 cut(s) 175, 203, 325, 497, 545, 767, 1011
HspAI GCGC 3 cut(s) 23, 25, 27
Ksp22I TGATCA 1 cut(s) 52
KspAI GTTAAC 1 cut(s) 1126
Kzo9I GATC 4 cut(s) 52, 133, 415, 982
LmnI GCTCC 2 cut(s) 216, 1101
LweI GCATC 2 cut(s) 373, 382
MaeI CTAG 1 cut(s) 215
MaeII ACGT 1 cut(s) 705
MaeIII GTNAC 4 cut(s) 128, 781, 875, 986
MalI GATC 4 cut(s) 54, 135, 417, 984
MauBI CGCGCGCG 1 cut(s) 23
MbiI CCGCTC 1 cut(s) 590
MboI GATC 4 cut(s) 52, 133, 415, 982
MboII GAAGA 7 cut(s) 80, 281, 500, 810, 839, 889, 893
MhlI GDGCHC 2 cut(s) 964, 1106
MlyI GAGTC 1 cut(s) 497
MmeI TCCRAC 2 cut(s) 504, 688
MnlI CCTC 6 cut(s) 73, 302, 749, 772, 821, 1105
MseI TTAA 3 cut(s) 609, 687, 1125
MslI CAYNNNNRTG 1 cut(s) 800
MspCI CTTAAG 1 cut(s) 686
MspR9I CCNGG 1 cut(s) 1048
MvaI CCWGG 1 cut(s) 1048
MvnI CGCG 3 cut(s) 23, 25, 27
MwoI GCNNNNNNNGC 3 cut(s) 24, 35, 1079
NcoI CCATGG 1 cut(s) 763
NdeII GATC 4 cut(s) 52, 133, 415, 982
NlaIII CATG 7 cut(s) 175, 203, 325, 497, 545, 767, 1011
NlaIV GGNNCC 2 cut(s) 451, 737
NmeAIII GCCGAG 1 cut(s) 1085
NmuCI GTSAC 1 cut(s) 875
NspI RCATGY 1 cut(s) 325
NspV TTCGAA 2 cut(s) 615, 654
PaeI GCATGC 1 cut(s) 325
PagI TCATGA 1 cut(s) 541
PaqCI CACCTGC 1 cut(s) 964
PauI GCGCGC 2 cut(s) 23, 25
PfeI GAWTC 4 cut(s) 470, 563, 682, 691
PkrI GCNGC 1 cut(s) 460
PleI GAGTC 1 cut(s) 497
PpsI GAGTC 1 cut(s) 497
PsiI TTATAA 1 cut(s) 357
Psp124BI GAGCTC 1 cut(s) 1106
Psp1406I AACGTT 1 cut(s) 705
Psp6I CCWGG 1 cut(s) 1046
PspGI CCWGG 1 cut(s) 1046
PspN4I GGNNCC 2 cut(s) 451, 737
PspPI GGNCC 2 cut(s) 147, 450
PteI GCGCGC 2 cut(s) 23, 25
RsaI GTAC 1 cut(s) 580
RsaNI GTAC 1 cut(s) 579
RseI CAYNNNNRTG 1 cut(s) 800
SacI GAGCTC 1 cut(s) 1106
SaqAI TTAA 3 cut(s) 609, 687, 1125
SatI GCNGC 1 cut(s) 459
Sau3AI GATC 4 cut(s) 52, 133, 415, 982
Sau96I GGNCC 2 cut(s) 147, 450
SchI GAGTC 1 cut(s) 497
ScrFI CCNGG 1 cut(s) 1048
SduI GDGCHC 2 cut(s) 964, 1106
SfaNI GCATC 2 cut(s) 373, 382
SfcI CTRYAG 1 cut(s) 955
SfuI TTCGAA 2 cut(s) 615, 654
SinI GGWCC 1 cut(s) 450
SmiMI CAYNNNNRTG 1 cut(s) 800
SmlI CTYRAG 2 cut(s) 686, 1022
SmoI CTYRAG 2 cut(s) 686, 1022
SphI GCATGC 1 cut(s) 325
SsiI CCGC 6 cut(s) 370, 458, 582, 588, 663, 923
SspMI CTAG 1 cut(s) 215
SstI GAGCTC 1 cut(s) 1106
StyD4I CCNGG 1 cut(s) 1046
StyI CCWWGG 2 cut(s) 230, 763
TaaI ACNGT 5 cut(s) 98, 117, 179, 248, 1002
TaiI ACGT 1 cut(s) 708
TaqI TCGA 4 cut(s) 14, 615, 654, 750
TauI GCSGC 1 cut(s) 461
TfiI GAWTC 4 cut(s) 470, 563, 682, 691
Tru1I TTAA 3 cut(s) 609, 687, 1125
Tru9I TTAA 3 cut(s) 609, 687, 1125
TscAI CASTG 1 cut(s) 702
TseFI GTSAC 1 cut(s) 875
Tsp45I GTSAC 1 cut(s) 875
TspDTI ATGAA 5 cut(s) 17, 176, 510, 530, 558
TspRI CASTG 1 cut(s) 702
Vha464I CTTAAG 1 cut(s) 686
VpaK11BI GGWCC 1 cut(s) 450
XagI CCTNNNNNAGG 1 cut(s) 911
XapI RAATTY 6 cut(s) 10, 427, 573, 611, 932, 947
XceI RCATGY 1 cut(s) 325
XmiI GTMKAC 1 cut(s) 1004
XspI CTAG 1 cut(s) 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.