Rmu_sc0004336.1_g000012

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004336.1
OG0000417
Physical Location & Seq
Forward (+)
44196 .. 44519
324 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004336.1_g000012.1.cds

Sequence Viewer

Length: 324 bp
atggataacctcatctcttcaaaggaagatatggaattgctctgcaaggaaaaagtaataggtaattggatgagtgatgaagatggttgtaagtttttcaacaacctttacaaggacatcccgcataacaagttctactatgttgagctgtgcaaaaaattgaatgatcgttacagattgaaacggtatacatggttggctttactcaagatggaaaagttttctaacccctggagaactttggcttttggggtagctattatcgctttgtttctctcctcgtggagctcggcaaacaacattcgggttaactggaataagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

107

Amino Acids

12.82

Weight (kDa)

9.17

Isoelectric Point (pI)

35.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000417)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g32770 FvH4_4g02520 FvH4_4g02520 FvH4_4g02530 FvH4_4g02550 FvH4_4g17730 FvH4_4g17730
rosa_chinensis RchiOBHm_Chr1g0318801 RchiOBHm_Chr4g0390011 RchiOBHm_Chr4g0390031 RchiOBHm_Chr4g0390041 RchiOBHm_Chr4g0390061 RchiOBHm_Chr4g0390091 RchiOBHm_Chr4g0390101 RchiOBHm_Chr4g0390141 RchiOBHm_Chr4g0390181 RchiOBHm_Chr4g0390191 RchiOBHm_Chr4g0390201 RchiOBHm_Chr4g0390231 RchiOBHm_Chr4g0390241 RchiOBHm_Chr4g0390251 RchiOBHm_Chr4g0390661 RchiOBHm_Chr4g0390711 RchiOBHm_Chr4g0390741 RchiOBHm_Chr4g0390771 RchiOBHm_Chr4g0390801 RchiOBHm_Chr5g0058271
rosa_laevigata RLG00000008685 RLG00000009910 RLG00000009930 RLG00000009932 RLG00000009933 RLG00000009934 RLG00000009935 RLG00000009937 RLG00000009938 RLG00000009940 RLG00000035208 RLG00000035209
rosa_multiflora Rmu_co8281525.1_g000001 Rmu_co8464925.1_g000001 Rmu_sc0000171.1_g000023 Rmu_sc0000171.1_g000027 Rmu_sc0000367.1_g000061 Rmu_sc0000679.1_g000027 Rmu_sc0001380.1_g000026 Rmu_sc0001380.1_g000030 Rmu_sc0001471.1_g000010 Rmu_sc0003643.1_g000007 Rmu_sc0004336.1_g000002 Rmu_sc0004336.1_g000011 Rmu_sc0004336.1_g000012 Rmu_sc0005003.1_g000007 Rmu_sc0005003.1_g000012 Rmu_sc0005003.1_g000016 Rmu_sc0005003.1_g000022 Rmu_sc0008322.1_g000002 Rmu_sc0011197.1_g000004 Rmu_sc0014620.1_g000006 Rmu_sc0014620.1_g000017 Rmu_sc0018617.1_g000002
rosa_roxburghii Rroxscaffold_1G00022270 Rroxscaffold_5G00336180 Rroxscaffold_5G00336220 Rroxscaffold_5G00336240 Rroxscaffold_5G00336250 Rroxscaffold_5G00336290 Rroxscaffold_5G00336310 Rroxscaffold_5G00336350 Rroxscaffold_5G00336370 Rroxscaffold_5G00336670 Rroxscaffold_5G00336700 Rroxscaffold_5G00336710
rosa_rugosa Rorug01G0020300 Rorug03G0327700 Rorug03G0327800 Rorug03G0328000 Rorug03G0328100 Rorug03G0328300 Rorug03G0328600 Rorug03G0328600 Rorug03G0331700 Rorug03G0331800 Rorug05G0312900
rosa_samantha Rh4DG024700 Rh4DG024900 Rh4DG025000 Rh4DG025200 Rh4DG025500 Rh4DG025900 Rh4DG026200 Rh4DG030200 Rh5DG407000
rosa_wichuraiana Rw4G002360 Rw4G002410 Rw4G002420 Rw4G002450 Rw4G002480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 188
AciI CCGC 1 cut(s) 122
AfiI CCNNNNNNNGG 1 cut(s) 112
AgsI TTSAA 4 cut(s) 21, 100, 163, 181
AjnI CCWGG 1 cut(s) 230
AluBI AGCT 3 cut(s) 148, 257, 288
AluI AGCT 3 cut(s) 148, 257, 288
Alw21I GWGCWC 1 cut(s) 290
BanII GRGCYC 1 cut(s) 290
BauI CACGAG 1 cut(s) 280
Bbv12I GWGCWC 1 cut(s) 290
BccI CCATC 2 cut(s) 77, 205
BciT130I CCWGG 1 cut(s) 232
Bme1390I CCNGG 1 cut(s) 232
BmrFI CCNGG 1 cut(s) 232
BpmI CTGGAG 1 cut(s) 253
BpuEI CTTGAG 1 cut(s) 191
BsaJI CCNNGG 1 cut(s) 230
Bsc4I CCNNNNNNNGG 1 cut(s) 112
Bse1I ACTGG 1 cut(s) 317
BseBI CCWGG 1 cut(s) 232
BseDI CCNNGG 1 cut(s) 230
BseGI GGATG 2 cut(s) 75, 117
BseLI CCNNNNNNNGG 1 cut(s) 112
BseNI ACTGG 1 cut(s) 317
BseRI GAGGAG 1 cut(s) 268
BsiHKAI GWGCWC 1 cut(s) 290
BslI CCNNNNNNNGG 1 cut(s) 112
Bsp1286I GDGCHC 1 cut(s) 290
Bsp143I GATC 1 cut(s) 166
BspACI CCGC 1 cut(s) 122
BsrI ACTGG 1 cut(s) 317
BssECI CCNNGG 1 cut(s) 230
BssMI GATC 1 cut(s) 166
BssNAI GTATAC 1 cut(s) 189
BssSI CACGAG 1 cut(s) 280
Bst1107I GTATAC 1 cut(s) 189
Bst2BI CACGAG 1 cut(s) 280
Bst2UI CCWGG 1 cut(s) 232
Bst4CI ACNGT 1 cut(s) 186
Bst6I CTCTTC 1 cut(s) 22
BstENI CCTNNNNNAGG 1 cut(s) 110
BstF5I GGATG 2 cut(s) 75, 117
BstKTI GATC 1 cut(s) 169
BstMBI GATC 1 cut(s) 166
BstMWI GCNNNNNNNGC 1 cut(s) 263
BstNI CCWGG 1 cut(s) 232
BstSCI CCNGG 1 cut(s) 230
BstZ17I GTATAC 1 cut(s) 189
BtsCI GGATG 2 cut(s) 75, 117
CviAII CATG 1 cut(s) 192
CviJI RGCY 5 cut(s) 148, 200, 245, 257, 288
CviKI_1 RGCY 5 cut(s) 148, 200, 245, 257, 288
DpnI GATC 1 cut(s) 168
DpnII GATC 1 cut(s) 166
Eam1104I CTCTTC 1 cut(s) 22
EarI CTCTTC 1 cut(s) 22
Ecl136II GAGCTC 1 cut(s) 288
Eco24I GRGCYC 1 cut(s) 290
Eco53kI GAGCTC 1 cut(s) 288
EcoICRI GAGCTC 1 cut(s) 288
EcoNI CCTNNNNNAGG 1 cut(s) 110
EcoRII CCWGG 1 cut(s) 230
EcoT38I GRGCYC 1 cut(s) 290
FaeI CATG 1 cut(s) 195
FaiI YATR 5 cut(s) 32, 126, 141, 189, 193
FatI CATG 1 cut(s) 191
FauI CCCGC 1 cut(s) 129
FblI GTMKAC 1 cut(s) 188
FokI GGATG 2 cut(s) 82, 104
FriOI GRGCYC 1 cut(s) 290
GsuI CTGGAG 1 cut(s) 253
Hin1II CATG 1 cut(s) 195
HincII GTYRAC 1 cut(s) 310
HindII GTYRAC 1 cut(s) 310
HpaI GTTAAC 1 cut(s) 310
Hpy166II GTNNAC 2 cut(s) 189, 310
Hpy188III TCNNGA 1 cut(s) 208
Hpy8I GTNNAC 2 cut(s) 189, 310
HpyCH4III ACNGT 1 cut(s) 186
HpyCH4V TGCA 2 cut(s) 45, 153
HpyF10VI GCNNNNNNNGC 1 cut(s) 263
Hsp92II CATG 1 cut(s) 195
KspAI GTTAAC 1 cut(s) 310
Kzo9I GATC 1 cut(s) 166
LmnI GCTCC 1 cut(s) 285
LpnPI CCDG 3 cut(s) 217, 244, 298
MaeIII GTNAC 1 cut(s) 170
MalI GATC 1 cut(s) 168
MboI GATC 1 cut(s) 166
MboII GAAGA 3 cut(s) 9, 38, 92
MhlI GDGCHC 1 cut(s) 290
MluCI AATT 3 cut(s) 35, 64, 158
MnlI CCTC 2 cut(s) 20, 289
MseI TTAA 1 cut(s) 309
MspR9I CCNGG 1 cut(s) 232
MvaI CCWGG 1 cut(s) 232
MwoI GCNNNNNNNGC 1 cut(s) 263
NdeII GATC 1 cut(s) 166
NlaIII CATG 1 cut(s) 195
NmeAIII GCCGAG 1 cut(s) 269
Psp124BI GAGCTC 1 cut(s) 290
Psp6I CCWGG 1 cut(s) 230
PspGI CCWGG 1 cut(s) 230
SacI GAGCTC 1 cut(s) 290
SaqAI TTAA 1 cut(s) 309
Sau3AI GATC 1 cut(s) 166
ScrFI CCNGG 1 cut(s) 232
SduI GDGCHC 1 cut(s) 290
SetI ASST 6 cut(s) 12, 64, 108, 150, 259, 290
SmlI CTYRAG 1 cut(s) 206
SmoI CTYRAG 1 cut(s) 206
Sse9I AATT 3 cut(s) 35, 64, 158
SsiI CCGC 1 cut(s) 122
SstI GAGCTC 1 cut(s) 290
StyD4I CCNGG 1 cut(s) 230
TaaI ACNGT 1 cut(s) 186
TasI AATT 3 cut(s) 35, 64, 158
Tru1I TTAA 1 cut(s) 309
Tru9I TTAA 1 cut(s) 309
TspDTI ATGAA 1 cut(s) 93
XagI CCTNNNNNAGG 1 cut(s) 110
XmiI GTMKAC 1 cut(s) 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.