RchiOBHm_Chr4g0390101

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000417
Physical Location & Seq
Reverse (-)
5306626 .. 5307252
627 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36317

Sequence Viewer

Length: 603 bp
ATGTCCGCAAATCATAGAAGTGGTAGAGATCATACAGTTATCGATATTATCGATGACCTCGAGAAAAGCAAGAAATGCAAGAAATGCATCTTCAGAGTTCCTAACGTGCTCTGGAGACAAAATCCAGCAGCATATACACCTGACGTTGCATCAATCGGACCTTTTCATAGTTATCGAGGCAAGGAGGAAGGTAAAGGAGGCAAAGAAGGCAATGGCGAAAAATATTTCCAACTCATGGAACGAGTGAAAGCTAGCTATTTGAAAGAAATTCTCATGGGTATGAAGAAAACTTTGAAAGAGTTGACTGCTGAAGTCATTAAGCTCTCAGATCAAAAGAATGAAGGCGAATTTGATCAACGAGCGCGTGCTTTTTATGCAGAACCACTTGATGATCATATTTCCTCTGAAGAGTTCATCAACATGATGATAGTTGACGGTTGCTTCCTAATTCAACTGTTTCTGAAGTGTAACGATCCGAAACTCAGGGCCTTTGATGACCCAGTGTTCAACATGGACTGTATGTTTCATTTCCTATGCCATGACATTTTGCTCCTAGAAAATCAATTACCTTGGTTTGTTAATTGTTATCCACAGTTTGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

200

Amino Acids

23.22

Weight (kDa)

6.08

Isoelectric Point (pI)

31.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 30 - 193 1e-37 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000417)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g32770 FvH4_4g02520 FvH4_4g02520 FvH4_4g02530 FvH4_4g02550 FvH4_4g17730 FvH4_4g17730
rosa_chinensis RchiOBHm_Chr1g0318801 RchiOBHm_Chr4g0390011 RchiOBHm_Chr4g0390031 RchiOBHm_Chr4g0390041 RchiOBHm_Chr4g0390061 RchiOBHm_Chr4g0390091 RchiOBHm_Chr4g0390101 RchiOBHm_Chr4g0390141 RchiOBHm_Chr4g0390181 RchiOBHm_Chr4g0390191 RchiOBHm_Chr4g0390201 RchiOBHm_Chr4g0390231 RchiOBHm_Chr4g0390241 RchiOBHm_Chr4g0390251 RchiOBHm_Chr4g0390661 RchiOBHm_Chr4g0390711 RchiOBHm_Chr4g0390741 RchiOBHm_Chr4g0390771 RchiOBHm_Chr4g0390801 RchiOBHm_Chr5g0058271
rosa_laevigata RLG00000008685 RLG00000009910 RLG00000009930 RLG00000009932 RLG00000009933 RLG00000009934 RLG00000009935 RLG00000009937 RLG00000009938 RLG00000009940 RLG00000035208 RLG00000035209
rosa_multiflora Rmu_co8281525.1_g000001 Rmu_co8464925.1_g000001 Rmu_sc0000171.1_g000023 Rmu_sc0000171.1_g000027 Rmu_sc0000367.1_g000061 Rmu_sc0000679.1_g000027 Rmu_sc0001380.1_g000026 Rmu_sc0001380.1_g000030 Rmu_sc0001471.1_g000010 Rmu_sc0003643.1_g000007 Rmu_sc0004336.1_g000002 Rmu_sc0004336.1_g000011 Rmu_sc0004336.1_g000012 Rmu_sc0005003.1_g000007 Rmu_sc0005003.1_g000012 Rmu_sc0005003.1_g000016 Rmu_sc0005003.1_g000022 Rmu_sc0008322.1_g000002 Rmu_sc0011197.1_g000004 Rmu_sc0014620.1_g000006 Rmu_sc0014620.1_g000017 Rmu_sc0018617.1_g000002
rosa_roxburghii Rroxscaffold_1G00022270 Rroxscaffold_5G00336180 Rroxscaffold_5G00336220 Rroxscaffold_5G00336240 Rroxscaffold_5G00336250 Rroxscaffold_5G00336290 Rroxscaffold_5G00336310 Rroxscaffold_5G00336350 Rroxscaffold_5G00336370 Rroxscaffold_5G00336670 Rroxscaffold_5G00336700 Rroxscaffold_5G00336710
rosa_rugosa Rorug01G0020300 Rorug03G0327700 Rorug03G0327800 Rorug03G0328000 Rorug03G0328100 Rorug03G0328300 Rorug03G0328600 Rorug03G0328600 Rorug03G0331700 Rorug03G0331800 Rorug05G0312900
rosa_samantha Rh4DG024700 Rh4DG024900 Rh4DG025000 Rh4DG025200 Rh4DG025500 Rh4DG025900 Rh4DG026200 Rh4DG030200 Rh5DG407000
rosa_wichuraiana Rw4G002360 Rw4G002410 Rw4G002420 Rw4G002450 Rw4G002480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 235
AccII CGCG 1 cut(s) 364
AciI CCGC 1 cut(s) 6
AclWI GGATC 1 cut(s) 467
AcsI RAATTY 2 cut(s) 267, 347
AcuI CTGAAG 4 cut(s) 76, 330, 426, 482
AfiI CCNNNNNNNGG 1 cut(s) 235
AgsI TTSAA 4 cut(s) 262, 295, 452, 508
AluBI AGCT 3 cut(s) 251, 255, 322
AluI AGCT 3 cut(s) 251, 255, 322
Alw21I GWGCWC 1 cut(s) 111
Alw26I GTCTC 1 cut(s) 109
AlwI GGATC 1 cut(s) 467
Ama87I CYCGRG 1 cut(s) 59
AoxI GGCC 1 cut(s) 486
ApeKI GCWGC 1 cut(s) 128
ApoI RAATTY 2 cut(s) 267, 347
AspLEI GCGC 1 cut(s) 364
AspS9I GGNCC 2 cut(s) 158, 486
AsuNHI GCTAGC 1 cut(s) 251
AvaI CYCGRG 1 cut(s) 59
AvaII GGWCC 1 cut(s) 158
Bbv12I GWGCWC 1 cut(s) 111
BbvI GCAGC 1 cut(s) 140
BclI TGATCA 2 cut(s) 352, 391
BcoDI GTCTC 1 cut(s) 109
BfaI CTAG 2 cut(s) 252, 554
BisI GCNGC 1 cut(s) 129
BlsI GCNGC 1 cut(s) 130
Bme18I GGWCC 1 cut(s) 158
BmeT110I CYCGRG 1 cut(s) 59
BmgT120I GGNCC 2 cut(s) 158, 486
BmrI ACTGGG 1 cut(s) 494
BmsI GCATC 2 cut(s) 96, 158
BmtI GCTAGC 1 cut(s) 255
BmuI ACTGGG 1 cut(s) 494
BpmI CTGGAG 1 cut(s) 133
Bsa29I ATCGAT 2 cut(s) 42, 51
BsaJI CCNNGG 1 cut(s) 569
Bsc4I CCNNNNNNNGG 1 cut(s) 235
Bse1I ACTGG 1 cut(s) 500
Bse3DI GCAATG 1 cut(s) 217
BseCI ATCGAT 2 cut(s) 42, 51
BseDI CCNNGG 1 cut(s) 569
BseLI CCNNNNNNNGG 1 cut(s) 235
BseMI GCAATG 1 cut(s) 217
BseMII CTCAG 2 cut(s) 339, 496
BseNI ACTGG 1 cut(s) 500
BseXI GCAGC 1 cut(s) 140
Bsh1236I CGCG 1 cut(s) 364
BshFI GGCC 1 cut(s) 488
BshVI ATCGAT 2 cut(s) 42, 51
BsiHKAI GWGCWC 1 cut(s) 111
BsiHKCI CYCGRG 1 cut(s) 59
BslI CCNNNNNNNGG 1 cut(s) 235
BsmAI GTCTC 1 cut(s) 109
BsnI GGCC 1 cut(s) 488
BsoBI CYCGRG 1 cut(s) 59
Bsp1286I GDGCHC 1 cut(s) 111
Bsp143I GATC 5 cut(s) 28, 328, 352, 391, 472
BspACI CCGC 1 cut(s) 6
BspANI GGCC 1 cut(s) 488
BspCNI CTCAG 2 cut(s) 338, 495
BspDI ATCGAT 2 cut(s) 42, 51
BspFNI CGCG 1 cut(s) 364
BspOI GCTAGC 1 cut(s) 255
BspPI GGATC 1 cut(s) 467
BsrDI GCAATG 1 cut(s) 217
BsrI ACTGG 1 cut(s) 500
BssECI CCNNGG 1 cut(s) 569
BssMI GATC 5 cut(s) 28, 328, 352, 391, 472
BssT1I CCWWGG 1 cut(s) 569
Bst4CI ACNGT 5 cut(s) 37, 437, 456, 518, 594
Bst6I CTCTTC 1 cut(s) 402
BstAPI GCANNNNNTGC 2 cut(s) 75, 84
BstC8I GCNNGC 2 cut(s) 253, 366
BstDEI CTNAG 2 cut(s) 325, 482
BstFNI CGCG 1 cut(s) 364
BstHHI GCGC 1 cut(s) 364
BstKTI GATC 5 cut(s) 31, 331, 355, 394, 475
BstMAI GTCTC 1 cut(s) 109
BstMBI GATC 5 cut(s) 28, 328, 352, 391, 472
BstMWI GCNNNNNNNGC 4 cut(s) 75, 84, 207, 374
BstUI CGCG 1 cut(s) 364
BstV1I GCAGC 1 cut(s) 140
Bsu15I ATCGAT 2 cut(s) 42, 51
BsuRI GGCC 1 cut(s) 488
BsuTUI ATCGAT 2 cut(s) 42, 51
BtsIMutI CAGTG 1 cut(s) 507
Cac8I GCNNGC 2 cut(s) 253, 366
CfoI GCGC 1 cut(s) 364
Cfr13I GGNCC 2 cut(s) 158, 486
ClaI ATCGAT 2 cut(s) 42, 51
CviAII CATG 5 cut(s) 235, 274, 421, 511, 539
CviJI RGCY 4 cut(s) 251, 255, 322, 488
CviKI_1 RGCY 4 cut(s) 251, 255, 322, 488
DdeI CTNAG 2 cut(s) 325, 482
DpnI GATC 5 cut(s) 30, 330, 354, 393, 474
DpnII GATC 5 cut(s) 28, 328, 352, 391, 472
Eam1104I CTCTTC 1 cut(s) 402
EarI CTCTTC 1 cut(s) 402
Eco130I CCWWGG 1 cut(s) 569
Eco47I GGWCC 1 cut(s) 158
Eco57I CTGAAG 4 cut(s) 76, 330, 426, 482
Eco88I CYCGRG 1 cut(s) 59
EcoO109I RGGNCCY 1 cut(s) 486
EcoT14I CCWWGG 1 cut(s) 569
EcoT22I ATGCAT 1 cut(s) 89
ErhI CCWWGG 1 cut(s) 569
FaeI CATG 5 cut(s) 238, 277, 424, 514, 542
FatI CATG 5 cut(s) 234, 273, 420, 510, 538
FbaI TGATCA 2 cut(s) 352, 391
Fnu4HI GCNGC 1 cut(s) 129
Fsp4HI GCNGC 1 cut(s) 129
FspBI CTAG 2 cut(s) 252, 554
GlaI GCGC 1 cut(s) 363
GluI GCNGC 1 cut(s) 129
GsuI CTGGAG 1 cut(s) 133
HaeIII GGCC 1 cut(s) 488
HhaI GCGC 1 cut(s) 364
Hin1II CATG 5 cut(s) 238, 277, 424, 514, 542
Hin6I GCGC 1 cut(s) 362
HinP1I GCGC 1 cut(s) 362
HincII GTYRAC 2 cut(s) 303, 433
HindII GTYRAC 2 cut(s) 303, 433
Hpy166II GTNNAC 2 cut(s) 303, 433
Hpy188I TCNGA 6 cut(s) 95, 158, 328, 406, 462, 477
Hpy188III TCNNGA 2 cut(s) 61, 112
Hpy8I GTNNAC 2 cut(s) 303, 433
HpyAV CCTTC 3 cut(s) 182, 200, 335
HpyCH4III ACNGT 5 cut(s) 37, 437, 456, 518, 594
HpyCH4IV ACGT 2 cut(s) 105, 144
HpyCH4V TGCA 4 cut(s) 78, 87, 149, 377
HpyF10VI GCNNNNNNNGC 4 cut(s) 75, 84, 207, 374
HpyF3I CTNAG 2 cut(s) 325, 482
HpySE526I ACGT 2 cut(s) 105, 144
Hsp92II CATG 5 cut(s) 238, 277, 424, 514, 542
HspAI GCGC 1 cut(s) 362
Ksp22I TGATCA 2 cut(s) 352, 391
Kzo9I GATC 5 cut(s) 28, 328, 352, 391, 472
LmnI GCTCC 1 cut(s) 555
LpnPI CCDG 5 cut(s) 97, 138, 153, 469, 513
Lsp1109I GCAGC 1 cut(s) 140
LweI GCATC 2 cut(s) 96, 158
MaeI CTAG 2 cut(s) 252, 554
MaeII ACGT 2 cut(s) 105, 144
MaeIII GTNAC 1 cut(s) 467
MalI GATC 5 cut(s) 30, 330, 354, 393, 474
MboI GATC 5 cut(s) 28, 328, 352, 391, 472
MboII GAAGA 3 cut(s) 82, 295, 419
MhlI GDGCHC 1 cut(s) 111
MluCI AATT 5 cut(s) 267, 347, 447, 563, 580
MmeI TCCRAC 1 cut(s) 253
MnlI CCTC 5 cut(s) 68, 170, 178, 191, 412
Mph1103I ATGCAT 1 cut(s) 89
MseI TTAA 2 cut(s) 318, 579
MslI CAYNNNNRTG 3 cut(s) 18, 278, 419
MvnI CGCG 1 cut(s) 364
MwoI GCNNNNNNNGC 4 cut(s) 75, 84, 207, 374
NdeII GATC 5 cut(s) 28, 328, 352, 391, 472
NheI GCTAGC 1 cut(s) 251
NlaIII CATG 5 cut(s) 238, 277, 424, 514, 542
NsiI ATGCAT 1 cut(s) 89
PaeR7I CTCGAG 1 cut(s) 59
PcsI WCGNNNNNNNCGW 2 cut(s) 48, 57
PflMI CCANNNNNTGG 1 cut(s) 235
PkrI GCNGC 1 cut(s) 130
PspPI GGNCC 2 cut(s) 158, 486
RseI CAYNNNNRTG 3 cut(s) 18, 278, 419
SaqAI TTAA 2 cut(s) 318, 579
SatI GCNGC 1 cut(s) 129
Sau3AI GATC 5 cut(s) 28, 328, 352, 391, 472
Sau96I GGNCC 2 cut(s) 158, 486
SduI GDGCHC 1 cut(s) 111
SfaNI GCATC 2 cut(s) 96, 158
Sfr274I CTCGAG 1 cut(s) 59
SinI GGWCC 1 cut(s) 158
SlaI CTCGAG 1 cut(s) 59
SmiMI CAYNNNNRTG 3 cut(s) 18, 278, 419
SmlI CTYRAG 1 cut(s) 59
SmoI CTYRAG 1 cut(s) 59
Sse9I AATT 5 cut(s) 267, 347, 447, 563, 580
SsiI CCGC 1 cut(s) 6
SspI AATATT 1 cut(s) 224
SspMI CTAG 2 cut(s) 252, 554
StyI CCWWGG 1 cut(s) 569
TaaI ACNGT 5 cut(s) 37, 437, 456, 518, 594
TaiI ACGT 2 cut(s) 108, 147
TaqI TCGA 4 cut(s) 42, 51, 60, 175
TasI AATT 5 cut(s) 267, 347, 447, 563, 580
Tru1I TTAA 2 cut(s) 318, 579
Tru9I TTAA 2 cut(s) 318, 579
TscAI CASTG 1 cut(s) 507
TseI GCWGC 1 cut(s) 128
TspDTI ATGAA 5 cut(s) 155, 296, 354, 403, 515
TspRI CASTG 1 cut(s) 507
Van91I CCANNNNNTGG 1 cut(s) 235
VpaK11BI GGWCC 1 cut(s) 158
XapI RAATTY 2 cut(s) 267, 347
XhoI CTCGAG 1 cut(s) 59
XspI CTAG 2 cut(s) 252, 554
Zsp2I ATGCAT 1 cut(s) 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.