Rh4DG025900

UPF0481 protein At3g47200-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
Physical Location & Seq
Reverse (-)
4721226 .. 4726097
4872 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG025900.1

Sequence Viewer

Length: 1185 bp
ATGTCCGCAAATCATAGAAGTGGTAGAGATCATACAGTTATCGATATTCTCGATGACCACGAGAAAAGCAAGAAATGCAAGAAATGCATCTTCAGAGTTCCTAACGTGCTCTGGAGACAAAATCCAGCAGCATATACACCTGACGTTGTTTCAATCGGACCTTTCCATAGTTATCGAGGCAAGGAGGAAGGTAAAGGAGGCAAAGAAGGCAATGGCGAAAAATATTTCCAACTCATGGAACGAGTGAAAGCTAGCTATTTGAAAGAAATTCTCACGGAATACCCTAATCAAGCCTTCCTCTCTACTCTCATCCTTGAAGCCTTCAGCATGCTACCATCATTGAAGCAAAGTTGCTCATCTTATAATAAGCATCTCCGCAGAAACAAGTGTTTTTGCGATGCTGATTATCTGCACATACTTGATCTGATAAGAAATTCCATAGTAATTCCATCAGGGACCAAAGCGGCTGGAAAAGAATCTATGTCCAACCCTGAAGAACATGAAGTTGACTCTGGGAACAAACACGAGAGAAACAATAAAGTTGTTCATGAAGCTACCATTGACCCAGATTCACATCAAATTCGTACTGCAACCGCTCTCTCAAAGGCAGATATTAAATTCGAAAGCGTAGAAAAGGAGAGTATAATGGACATCCATTTCGAAACGGGCGGGTGTTTCAGGAATGGGATTCTTAAGATTCCACTGCTAAACGTTGGAATGTCATCGGAAACATTATTCAGGAACCTCATTGCAATCGAGCAATGCTACCATGGTTATTCAAACGAGGTTACATCTTATGCCATCTTTATGGATAACCTCATCTCTTCAAAGGAAGATATGGAATTACTTTGCAAGCAAAAAGTAATAGGTAACTTGATGAGTGATGAAGATGGTTGTAAGTTCTTCAGCAACCTTTACAAGGACATCCCGCACAACAAATTCTCGCACAACAAATTCTACTATAGTGCTCTTTGCAAGCAGGCCCAGTTGAGAGAGGTGACATTGCAGGAGGAAAATGCTGCATATGAAAAGGCTATATCAAACTGTGAAAGTAAAATACAGGAGAAGATTGAGGAAGCGGAGTTACTTAGGAGGAAGTTAGAGGAATTGGAGGACACTGAAAAGAATTTGAGAGATGAGCTGGAAAATGCACAAACAGCATTGGATACCAGTCGATCTCGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

394

Amino Acids

45.04

Weight (kDa)

6.1

Isoelectric Point (pI)

49.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 30 - 96 1.4e-10 Plant protein of unknown function
DUF247 PF03140 129 - 328 3.1e-37 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000417)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g32770 FvH4_4g02520 FvH4_4g02520 FvH4_4g02530 FvH4_4g02550 FvH4_4g17730 FvH4_4g17730
rosa_chinensis RchiOBHm_Chr1g0318801 RchiOBHm_Chr4g0390011 RchiOBHm_Chr4g0390031 RchiOBHm_Chr4g0390041 RchiOBHm_Chr4g0390061 RchiOBHm_Chr4g0390091 RchiOBHm_Chr4g0390101 RchiOBHm_Chr4g0390141 RchiOBHm_Chr4g0390181 RchiOBHm_Chr4g0390191 RchiOBHm_Chr4g0390201 RchiOBHm_Chr4g0390231 RchiOBHm_Chr4g0390241 RchiOBHm_Chr4g0390251 RchiOBHm_Chr4g0390661 RchiOBHm_Chr4g0390711 RchiOBHm_Chr4g0390741 RchiOBHm_Chr4g0390771 RchiOBHm_Chr4g0390801 RchiOBHm_Chr5g0058271
rosa_laevigata RLG00000008685 RLG00000009910 RLG00000009930 RLG00000009932 RLG00000009933 RLG00000009934 RLG00000009935 RLG00000009937 RLG00000009938 RLG00000009940 RLG00000035208 RLG00000035209
rosa_multiflora Rmu_co8281525.1_g000001 Rmu_co8464925.1_g000001 Rmu_sc0000171.1_g000023 Rmu_sc0000171.1_g000027 Rmu_sc0000367.1_g000061 Rmu_sc0000679.1_g000027 Rmu_sc0001380.1_g000026 Rmu_sc0001380.1_g000030 Rmu_sc0001471.1_g000010 Rmu_sc0003643.1_g000007 Rmu_sc0004336.1_g000002 Rmu_sc0004336.1_g000011 Rmu_sc0004336.1_g000012 Rmu_sc0005003.1_g000007 Rmu_sc0005003.1_g000012 Rmu_sc0005003.1_g000016 Rmu_sc0005003.1_g000022 Rmu_sc0008322.1_g000002 Rmu_sc0011197.1_g000004 Rmu_sc0014620.1_g000006 Rmu_sc0014620.1_g000017 Rmu_sc0018617.1_g000002
rosa_roxburghii Rroxscaffold_1G00022270 Rroxscaffold_5G00336180 Rroxscaffold_5G00336220 Rroxscaffold_5G00336240 Rroxscaffold_5G00336250 Rroxscaffold_5G00336290 Rroxscaffold_5G00336310 Rroxscaffold_5G00336350 Rroxscaffold_5G00336370 Rroxscaffold_5G00336670 Rroxscaffold_5G00336700 Rroxscaffold_5G00336710
rosa_rugosa Rorug01G0020300 Rorug03G0327700 Rorug03G0327800 Rorug03G0328000 Rorug03G0328100 Rorug03G0328300 Rorug03G0328600 Rorug03G0328600 Rorug03G0331700 Rorug03G0331800 Rorug05G0312900
rosa_samantha Rh4DG024700 Rh4DG024900 Rh4DG025000 Rh4DG025200 Rh4DG025500 Rh4DG025900 Rh4DG026200 Rh4DG030200 Rh5DG407000
rosa_wichuraiana Rw4G002360 Rw4G002410 Rw4G002420 Rw4G002450 Rw4G002480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 363
AccB7I CCANNNNNTGG 1 cut(s) 235
AccBSI CCGCTC 1 cut(s) 596
AciI CCGC 7 cut(s) 6, 376, 464, 594, 669, 929, 1079
AclI AACGTT 1 cut(s) 711
AcsI RAATTY 7 cut(s) 267, 433, 579, 617, 938, 953, 1126
AcuI CTGAAG 4 cut(s) 76, 307, 513, 889
AfaI GTAC 1 cut(s) 586
AfiI CCNNNNNNNGG 2 cut(s) 235, 919
AflII CTTAAG 1 cut(s) 692
AgsI TTSAA 6 cut(s) 153, 262, 317, 343, 780, 828
AluBI AGCT 4 cut(s) 251, 255, 554, 1141
AluI AGCT 4 cut(s) 251, 255, 554, 1141
Alw21I GWGCWC 2 cut(s) 111, 970
Alw26I GTCTC 1 cut(s) 109
AoxI GGCC 1 cut(s) 981
ApeKI GCWGC 2 cut(s) 128, 1019
ApoI RAATTY 7 cut(s) 267, 433, 579, 617, 938, 953, 1126
ArsI GACNNNNNNTTYG 2 cut(s) 641, 673
AspS9I GGNCC 3 cut(s) 158, 456, 982
AsuHPI GGTGA 1 cut(s) 1009
AsuII TTCGAA 2 cut(s) 621, 660
AsuNHI GCTAGC 1 cut(s) 251
AvaII GGWCC 2 cut(s) 158, 456
BarI GAAGNNNNNNTAC 2 cut(s) 1068, 1100
BauI CACGAG 2 cut(s) 59, 524
Bbv12I GWGCWC 2 cut(s) 111, 970
BbvI GCAGC 2 cut(s) 140, 1006
BccI CCATC 4 cut(s) 343, 457, 809, 884
BciVI GTATCC 1 cut(s) 1159
BcoDI GTCTC 1 cut(s) 109
BfaI CTAG 1 cut(s) 252
BfmI CTRYAG 1 cut(s) 961
BfrI CTTAAG 1 cut(s) 692
BfuI GTATCC 1 cut(s) 1159
BisI GCNGC 3 cut(s) 129, 465, 1020
BlsI GCNGC 3 cut(s) 130, 466, 1021
Bme18I GGWCC 2 cut(s) 158, 456
BmgT120I GGNCC 3 cut(s) 158, 456, 982
BmiI GGNNCC 2 cut(s) 457, 743
BmrI ACTGGG 1 cut(s) 979
BmsI GCATC 3 cut(s) 96, 379, 388
BmtI GCTAGC 1 cut(s) 255
BmuI ACTGGG 1 cut(s) 979
BpmI CTGGAG 1 cut(s) 133
Bpu14I TTCGAA 2 cut(s) 621, 660
Bsa29I ATCGAT 1 cut(s) 42
BsaBI GATNNNNATC 1 cut(s) 573
BsaJI CCNNGG 1 cut(s) 769
Bsc4I CCNNNNNNNGG 2 cut(s) 235, 919
Bse1I ACTGG 2 cut(s) 985, 1170
Bse3DI GCAATG 4 cut(s) 217, 747, 767, 1001
Bse8I GATNNNNATC 1 cut(s) 573
BseCI ATCGAT 1 cut(s) 42
BseDI CCNNGG 1 cut(s) 769
BseGI GGATG 3 cut(s) 309, 651, 924
BseJI GATNNNNATC 1 cut(s) 573
BseLI CCNNNNNNNGG 2 cut(s) 235, 919
BseMI GCAATG 4 cut(s) 217, 747, 767, 1001
BseNI ACTGG 2 cut(s) 985, 1170
BseXI GCAGC 2 cut(s) 140, 1006
BsgI GTGCAG 1 cut(s) 395
BshFI GGCC 1 cut(s) 983
BshVI ATCGAT 1 cut(s) 42
BsiHKAI GWGCWC 2 cut(s) 111, 970
BslFI GGGAC 1 cut(s) 469
BslI CCNNNNNNNGG 2 cut(s) 235, 919
BsmAI GTCTC 1 cut(s) 109
BsmFI GGGAC 1 cut(s) 469
BsnI GGCC 1 cut(s) 983
Bsp119I TTCGAA 2 cut(s) 621, 660
Bsp1286I GDGCHC 2 cut(s) 111, 970
Bsp143I GATC 3 cut(s) 28, 421, 1175
Bsp19I CCATGG 1 cut(s) 769
BspACI CCGC 7 cut(s) 6, 376, 464, 594, 669, 929, 1079
BspANI GGCC 1 cut(s) 983
BspDI ATCGAT 1 cut(s) 42
BspHI TCATGA 1 cut(s) 547
BspLI GGNNCC 2 cut(s) 457, 743
BspOI GCTAGC 1 cut(s) 255
BspT104I TTCGAA 2 cut(s) 621, 660
BspTI CTTAAG 1 cut(s) 692
BsrBI CCGCTC 1 cut(s) 596
BsrDI GCAATG 4 cut(s) 217, 747, 767, 1001
BsrI ACTGG 2 cut(s) 985, 1170
BssECI CCNNGG 1 cut(s) 769
BssMI GATC 3 cut(s) 28, 421, 1175
BssSI CACGAG 2 cut(s) 59, 524
BssT1I CCWWGG 1 cut(s) 769
Bst2BI CACGAG 2 cut(s) 59, 524
Bst4CI ACNGT 2 cut(s) 37, 1046
Bst6I CTCTTC 1 cut(s) 829
BstAFI CTTAAG 1 cut(s) 692
BstAPI GCANNNNNTGC 2 cut(s) 75, 84
BstBI TTCGAA 2 cut(s) 621, 660
BstC8I GCNNGC 5 cut(s) 253, 329, 854, 977, 981
BstDEI CTNAG 1 cut(s) 1088
BstDSI CCRYGG 1 cut(s) 769
BstENI CCTNNNNNAGG 1 cut(s) 917
BstF5I GGATG 3 cut(s) 309, 651, 924
BstKTI GATC 3 cut(s) 31, 424, 1178
BstMAI GTCTC 1 cut(s) 109
BstMBI GATC 3 cut(s) 28, 421, 1175
BstMWI GCNNNNNNNGC 4 cut(s) 75, 84, 207, 1157
BstNSI RCATGY 1 cut(s) 331
BstSFI CTRYAG 1 cut(s) 961
BstV1I GCAGC 2 cut(s) 140, 1006
BstXI CCANNNNNNTGG 1 cut(s) 808
Bsu15I ATCGAT 1 cut(s) 42
BsuI GTATCC 1 cut(s) 1159
BsuRI GGCC 1 cut(s) 983
BsuTUI ATCGAT 1 cut(s) 42
BtgI CCRYGG 1 cut(s) 769
BtgZI GCGATG 1 cut(s) 411
BtsCI GGATG 3 cut(s) 309, 651, 924
BtsI GCAGTG 1 cut(s) 701
BtsIMutI CAGTG 2 cut(s) 701, 1116
Cac8I GCNNGC 5 cut(s) 253, 329, 854, 977, 981
CciI TCATGA 1 cut(s) 547
Cfr13I GGNCC 3 cut(s) 158, 456, 982
ClaI ATCGAT 1 cut(s) 42
Csp6I GTAC 1 cut(s) 585
CviAII CATG 5 cut(s) 235, 328, 500, 548, 770
CviJI RGCY 9 cut(s) 251, 255, 293, 320, 467, 554, 983, 1034, 1141
CviKI_1 RGCY 9 cut(s) 251, 255, 293, 320, 467, 554, 983, 1034, 1141
CviQI GTAC 1 cut(s) 585
DdeI CTNAG 1 cut(s) 1088
DpnI GATC 3 cut(s) 30, 423, 1177
DpnII GATC 3 cut(s) 28, 421, 1175
Eam1104I CTCTTC 1 cut(s) 829
EarI CTCTTC 1 cut(s) 829
Eco130I CCWWGG 1 cut(s) 769
Eco47I GGWCC 2 cut(s) 158, 456
Eco57I CTGAAG 4 cut(s) 76, 307, 513, 889
EcoNI CCTNNNNNAGG 1 cut(s) 917
EcoT14I CCWWGG 1 cut(s) 769
EcoT22I ATGCAT 1 cut(s) 89
ErhI CCWWGG 1 cut(s) 769
FaeI CATG 5 cut(s) 238, 331, 503, 551, 773
FaqI GGGAC 1 cut(s) 469
FatI CATG 5 cut(s) 234, 327, 499, 547, 769
FauI CCCGC 2 cut(s) 662, 936
FauNDI CATATG 1 cut(s) 1024
Fnu4HI GCNGC 3 cut(s) 129, 465, 1020
FokI GGATG 3 cut(s) 296, 638, 911
Fsp4HI GCNGC 3 cut(s) 129, 465, 1020
FspBI CTAG 1 cut(s) 252
GluI GCNGC 3 cut(s) 129, 465, 1020
GsuI CTGGAG 1 cut(s) 133
HaeIII GGCC 1 cut(s) 983
Hin1II CATG 5 cut(s) 238, 331, 503, 551, 773
HincII GTYRAC 1 cut(s) 508
HindII GTYRAC 1 cut(s) 508
HinfI GANTC 5 cut(s) 476, 509, 569, 688, 697
HphI GGTGA 1 cut(s) 1009
Hpy166II GTNNAC 1 cut(s) 508
Hpy188I TCNGA 4 cut(s) 95, 158, 426, 727
Hpy188III TCNNGA 5 cut(s) 50, 112, 548, 679, 739
Hpy8I GTNNAC 1 cut(s) 508
HpyAV CCTTC 4 cut(s) 182, 200, 304, 331
HpyCH4III ACNGT 2 cut(s) 37, 1046
HpyCH4IV ACGT 3 cut(s) 105, 144, 711
HpyF10VI GCNNNNNNNGC 4 cut(s) 75, 84, 207, 1157
HpyF3I CTNAG 1 cut(s) 1088
HpySE526I ACGT 3 cut(s) 105, 144, 711
Hsp92II CATG 5 cut(s) 238, 331, 503, 551, 773
Kzo9I GATC 3 cut(s) 28, 421, 1175
Lsp1109I GCAGC 2 cut(s) 140, 1006
LweI GCATC 3 cut(s) 96, 379, 388
MaeI CTAG 1 cut(s) 252
MaeII ACGT 3 cut(s) 105, 144, 711
MaeIII GTNAC 4 cut(s) 787, 869, 997, 1083
MalI GATC 3 cut(s) 30, 423, 1177
MbiI CCGCTC 1 cut(s) 596
MboI GATC 3 cut(s) 28, 421, 1175
MboII GAAGA 7 cut(s) 82, 506, 816, 845, 895, 899, 1078
MhlI GDGCHC 2 cut(s) 111, 970
MlyI GAGTC 1 cut(s) 503
MmeI TCCRAC 3 cut(s) 253, 510, 694
Mph1103I ATGCAT 1 cut(s) 89
MseI TTAA 2 cut(s) 615, 693
MslI CAYNNNNRTG 2 cut(s) 18, 806
MspCI CTTAAG 1 cut(s) 692
MwoI GCNNNNNNNGC 4 cut(s) 75, 84, 207, 1157
NcoI CCATGG 1 cut(s) 769
NdeI CATATG 1 cut(s) 1024
NdeII GATC 3 cut(s) 28, 421, 1175
NheI GCTAGC 1 cut(s) 251
NlaIII CATG 5 cut(s) 238, 331, 503, 551, 773
NlaIV GGNNCC 2 cut(s) 457, 743
NmuCI GTSAC 1 cut(s) 997
NsiI ATGCAT 1 cut(s) 89
NspI RCATGY 1 cut(s) 331
NspV TTCGAA 2 cut(s) 621, 660
PaeI GCATGC 1 cut(s) 331
PagI TCATGA 1 cut(s) 547
PcsI WCGNNNNNNNCGW 2 cut(s) 48, 57
PfeI GAWTC 4 cut(s) 476, 569, 688, 697
PflMI CCANNNNNTGG 1 cut(s) 235
PkrI GCNGC 3 cut(s) 130, 466, 1021
PleI GAGTC 1 cut(s) 503
PpsI GAGTC 1 cut(s) 503
PsiI TTATAA 1 cut(s) 363
Psp1406I AACGTT 1 cut(s) 711
PspN4I GGNNCC 2 cut(s) 457, 743
PspPI GGNCC 3 cut(s) 158, 456, 982
RsaI GTAC 1 cut(s) 586
RsaNI GTAC 1 cut(s) 585
RseI CAYNNNNRTG 2 cut(s) 18, 806
SaqAI TTAA 2 cut(s) 615, 693
SatI GCNGC 3 cut(s) 129, 465, 1020
Sau3AI GATC 3 cut(s) 28, 421, 1175
Sau96I GGNCC 3 cut(s) 158, 456, 982
SchI GAGTC 1 cut(s) 503
SduI GDGCHC 2 cut(s) 111, 970
SfaNI GCATC 3 cut(s) 96, 379, 388
SfcI CTRYAG 1 cut(s) 961
SfuI TTCGAA 2 cut(s) 621, 660
SinI GGWCC 2 cut(s) 158, 456
SmiMI CAYNNNNRTG 2 cut(s) 18, 806
SmlI CTYRAG 1 cut(s) 692
SmoI CTYRAG 1 cut(s) 692
SphI GCATGC 1 cut(s) 331
SsiI CCGC 7 cut(s) 6, 376, 464, 594, 669, 929, 1079
SspI AATATT 1 cut(s) 224
SspMI CTAG 1 cut(s) 252
StyI CCWWGG 1 cut(s) 769
TaaI ACNGT 2 cut(s) 37, 1046
TaiI ACGT 3 cut(s) 108, 147, 714
TaqI TCGA 7 cut(s) 42, 51, 175, 621, 660, 756, 1174
TauI GCSGC 1 cut(s) 467
TfiI GAWTC 4 cut(s) 476, 569, 688, 697
Tru1I TTAA 2 cut(s) 615, 693
Tru9I TTAA 2 cut(s) 615, 693
TscAI CASTG 2 cut(s) 708, 1123
TseFI GTSAC 1 cut(s) 997
TseI GCWGC 2 cut(s) 128, 1019
Tsp45I GTSAC 1 cut(s) 997
TspDTI ATGAA 5 cut(s) 516, 536, 564, 900, 1041
TspGWI ACGGA 1 cut(s) 290
TspRI CASTG 2 cut(s) 708, 1123
Van91I CCANNNNNTGG 1 cut(s) 235
Vha464I CTTAAG 1 cut(s) 692
VpaK11BI GGWCC 2 cut(s) 158, 456
XagI CCTNNNNNAGG 1 cut(s) 917
XapI RAATTY 7 cut(s) 267, 433, 579, 617, 938, 953, 1126
XceI RCATGY 1 cut(s) 331
XspI CTAG 1 cut(s) 252
Zsp2I ATGCAT 1 cut(s) 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.