Rroxscaffold_5G00336180

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000417
Physical Location & Seq
Reverse (-)
3931470 .. 3932959
1490 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00336180.1

Sequence Viewer

Length: 1356 bp
ATGTCTGCAAATCGTGAAAGTGGTAGAGATCATACAGTTATTGATATTATCGATGACCGCGAGAAAAGCATGAAATGCAAGAAATGCATCTTCAGAGTTCCTAACGTGCTCCGGAGACAAAACCCAGAAGCCTATACACCTGACGTTGTTTCAATCGGACCTTTTCATCATTATCGAGAAAAGCGAGGCAAGGAGGAAGGTAAAGGAGTCAAGGAAGGCAAACAACGCATAGGCGAGGAAGATTTCCAACTTACGAAACGAGTGAAAAAGAGCTATTTGAATGAAATTCTCACAGGTATGAAGATAACTTTGGAAGAGTTGACCGCAGAAGTTACTGAGCTCTCAGATCAGAAGAATGAAGGTGGCTTTGAGGAACGAGTCCGCAATTTTTATGCAGAACCATTTGATCATATTTCTTCCAAAGACTTCATCGAGATGATGATAGTTCACGGTTGCTTCCTAATTCAACTGTTTCGGAAGTGTAACTATCCAGAACTTAGGGCCTTTGATGATCCGGTGTTCAACATGGACTCCTTCAGCATATTACCATCACTGAAGCAAAGTTGCTCATTTTATAATAAGCATCTCCGCAAAAGCAAGTGTCATTGTGATGCTGATTATCTGCATATACTTGATCTGGTAAGAGCTTCCATAGTTATTCCATTAAAGACCATCGATGGGAGAGCAGCTAGAAAAGAATCTATGTGCAGCCAAGCTGAAGAGCATCAAGTGCATGAAAGGACCATTCACAAGGCAGAGAGTAAAACTGTTCAGGAAGCTATCTTTGACCCAGATCTACATCATATATGTACCGCAACCGCTCTCTCAAAGGCAGACATTAAATTCAGAATGGTAAAAAAGGAGAGCATAATGGATATCCGATTCGAGAAGGGTGGGTGGTTCTGCAATGGGATTCTTGAGATTCCACAACTAAACGTTGGAATGTCATCAGAAACATTATTCAGGAACCTCATTGCAATTGAGCAATGCTACCATGGTTATTCAAACGAGATAACATCTTATGCCATCTTTATGGATAACCTCATCTCTTCAAAGGAAGATATGGAATTACTCTGCAAGCAAAAAGTAATTGGTAACTCGATGAGTGATGAAGATGGTTGTAAGTTTTTCAGCAACCTTTACAAAGAAATCCCGCTCAACAAGTTCTACTATGTTGAGCTGTGCGAAAAAGTAAACGATCGTTACAGATCGAGATGGTTTACATGGTTGGCTTTACTCAAGAGTGAAAAATTTTCTAGTCCCTGGAGAATTTTAGCTTTTCAGATAGGTATTATCATTTTGATTCTCACCGCGTGGAGTCAGACACTCAGCATTCGGGTTAACATGCAAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

451

Amino Acids

52.49

Weight (kDa)

7.86

Isoelectric Point (pI)

51.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 30 - 177 3.3e-25 Plant protein of unknown function
DUF247 PF03140 197 - 436 3.8e-49 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000417)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g32770 FvH4_4g02520 FvH4_4g02520 FvH4_4g02530 FvH4_4g02550 FvH4_4g17730 FvH4_4g17730
rosa_chinensis RchiOBHm_Chr1g0318801 RchiOBHm_Chr4g0390011 RchiOBHm_Chr4g0390031 RchiOBHm_Chr4g0390041 RchiOBHm_Chr4g0390061 RchiOBHm_Chr4g0390091 RchiOBHm_Chr4g0390101 RchiOBHm_Chr4g0390141 RchiOBHm_Chr4g0390181 RchiOBHm_Chr4g0390191 RchiOBHm_Chr4g0390201 RchiOBHm_Chr4g0390231 RchiOBHm_Chr4g0390241 RchiOBHm_Chr4g0390251 RchiOBHm_Chr4g0390661 RchiOBHm_Chr4g0390711 RchiOBHm_Chr4g0390741 RchiOBHm_Chr4g0390771 RchiOBHm_Chr4g0390801 RchiOBHm_Chr5g0058271
rosa_laevigata RLG00000008685 RLG00000009910 RLG00000009930 RLG00000009932 RLG00000009933 RLG00000009934 RLG00000009935 RLG00000009937 RLG00000009938 RLG00000009940 RLG00000035208 RLG00000035209
rosa_multiflora Rmu_co8281525.1_g000001 Rmu_co8464925.1_g000001 Rmu_sc0000171.1_g000023 Rmu_sc0000171.1_g000027 Rmu_sc0000367.1_g000061 Rmu_sc0000679.1_g000027 Rmu_sc0001380.1_g000026 Rmu_sc0001380.1_g000030 Rmu_sc0001471.1_g000010 Rmu_sc0003643.1_g000007 Rmu_sc0004336.1_g000002 Rmu_sc0004336.1_g000011 Rmu_sc0004336.1_g000012 Rmu_sc0005003.1_g000007 Rmu_sc0005003.1_g000012 Rmu_sc0005003.1_g000016 Rmu_sc0005003.1_g000022 Rmu_sc0008322.1_g000002 Rmu_sc0011197.1_g000004 Rmu_sc0014620.1_g000006 Rmu_sc0014620.1_g000017 Rmu_sc0018617.1_g000002
rosa_roxburghii Rroxscaffold_1G00022270 Rroxscaffold_5G00336180 Rroxscaffold_5G00336220 Rroxscaffold_5G00336240 Rroxscaffold_5G00336250 Rroxscaffold_5G00336290 Rroxscaffold_5G00336310 Rroxscaffold_5G00336350 Rroxscaffold_5G00336370 Rroxscaffold_5G00336670 Rroxscaffold_5G00336700 Rroxscaffold_5G00336710
rosa_rugosa Rorug01G0020300 Rorug03G0327700 Rorug03G0327800 Rorug03G0328000 Rorug03G0328100 Rorug03G0328300 Rorug03G0328600 Rorug03G0328600 Rorug03G0331700 Rorug03G0331800 Rorug05G0312900
rosa_samantha Rh4DG024700 Rh4DG024900 Rh4DG025000 Rh4DG025200 Rh4DG025500 Rh4DG025900 Rh4DG026200 Rh4DG030200 Rh5DG407000
rosa_wichuraiana Rw4G002360 Rw4G002410 Rw4G002420 Rw4G002450 Rw4G002480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 576
AccBSI CCGCTC 2 cut(s) 821, 1156
AccII CGCG 2 cut(s) 60, 1313
AccIII TCCGGA 1 cut(s) 111
AciI CCGC 8 cut(s) 58, 324, 382, 589, 813, 819, 1154, 1311
AclI AACGTT 1 cut(s) 936
AclWI GGATC 1 cut(s) 506
AcsI RAATTY 4 cut(s) 285, 842, 1250, 1269
AcuI CTGAAG 4 cut(s) 76, 520, 575, 738
AdeI CACNNNGTG 1 cut(s) 1314
AfaI GTAC 1 cut(s) 811
AfiI CCNNNNNNNGG 1 cut(s) 678
AgsI TTSAA 6 cut(s) 153, 280, 467, 523, 1005, 1053
AjnI CCWGG 1 cut(s) 1262
AjuI GAANNNNNNNTTGG 2 cut(s) 293, 325
AluBI AGCT 8 cut(s) 273, 340, 647, 689, 716, 779, 1180, 1277
AluI AGCT 8 cut(s) 273, 340, 647, 689, 716, 779, 1180, 1277
Alw21I GWGCWC 2 cut(s) 111, 342
Alw26I GTCTC 1 cut(s) 109
AlwI GGATC 1 cut(s) 506
Aor13HI TCCGGA 1 cut(s) 111
AoxI GGCC 1 cut(s) 501
ApeKI GCWGC 2 cut(s) 686, 708
ApoI RAATTY 4 cut(s) 285, 842, 1250, 1269
AspS9I GGNCC 3 cut(s) 158, 501, 741
AsuHPI GGTGA 1 cut(s) 1300
AvaII GGWCC 2 cut(s) 158, 741
BanII GRGCYC 1 cut(s) 342
Bbv12I GWGCWC 2 cut(s) 111, 342
BbvI GCAGC 2 cut(s) 698, 720
BccI CCATC 6 cut(s) 556, 671, 680, 1034, 1109, 1209
BciT130I CCWGG 1 cut(s) 1264
BclI TGATCA 1 cut(s) 406
BcoDI GTCTC 1 cut(s) 109
BfaI CTAG 2 cut(s) 690, 1257
BglII AGATCT 1 cut(s) 793
BisI GCNGC 2 cut(s) 687, 709
BlsI GCNGC 2 cut(s) 688, 710
Bme1390I CCNGG 1 cut(s) 1264
Bme18I GGWCC 2 cut(s) 158, 741
BmgT120I GGNCC 3 cut(s) 158, 501, 741
BmiI GGNNCC 1 cut(s) 968
BmrFI CCNGG 1 cut(s) 1264
BmsI GCATC 4 cut(s) 96, 592, 601, 733
BpmI CTGGAG 1 cut(s) 1285
BpuEI CTTGAG 2 cut(s) 938, 1223
Bsa29I ATCGAT 2 cut(s) 51, 675
BsaBI GATNNNNATC 1 cut(s) 798
BsaJI CCNNGG 2 cut(s) 994, 1262
BsaWI WCCGGW 2 cut(s) 111, 514
BsaXI ACNNNNNCTCC 2 cut(s) 515, 545
Bsc4I CCNNNNNNNGG 1 cut(s) 678
Bse3DI GCAATG 3 cut(s) 913, 972, 992
Bse8I GATNNNNATC 1 cut(s) 798
BseAI TCCGGA 1 cut(s) 111
BseBI CCWGG 1 cut(s) 1264
BseCI ATCGAT 2 cut(s) 51, 675
BseDI CCNNGG 2 cut(s) 994, 1262
BseJI GATNNNNATC 1 cut(s) 798
BseLI CCNNNNNNNGG 1 cut(s) 678
BseMI GCAATG 3 cut(s) 913, 972, 992
BseMII CTCAG 3 cut(s) 327, 357, 1342
BseXI GCAGC 2 cut(s) 698, 720
BsgI GTGCAG 1 cut(s) 727
Bsh1236I CGCG 2 cut(s) 60, 1313
Bsh1285I CGRYCG 1 cut(s) 1201
BshFI GGCC 1 cut(s) 503
BshVI ATCGAT 2 cut(s) 51, 675
BsiEI CGRYCG 1 cut(s) 1201
BsiHKAI GWGCWC 2 cut(s) 111, 342
BsiSI CCGG 2 cut(s) 112, 515
BslFI GGGAC 1 cut(s) 1245
BslI CCNNNNNNNGG 1 cut(s) 678
BsmAI GTCTC 1 cut(s) 109
BsmFI GGGAC 1 cut(s) 1245
BsmI GAATGC 1 cut(s) 1332
BsnI GGCC 1 cut(s) 503
Bsp1286I GDGCHC 2 cut(s) 111, 342
Bsp13I TCCGGA 1 cut(s) 111
Bsp143I GATC 8 cut(s) 28, 346, 406, 511, 634, 793, 1198, 1208
Bsp19I CCATGG 1 cut(s) 994
BspACI CCGC 8 cut(s) 58, 324, 382, 589, 813, 819, 1154, 1311
BspANI GGCC 1 cut(s) 503
BspCNI CTCAG 3 cut(s) 328, 356, 1341
BspDI ATCGAT 2 cut(s) 51, 675
BspEI TCCGGA 1 cut(s) 111
BspFNI CGCG 2 cut(s) 60, 1313
BspLI GGNNCC 1 cut(s) 968
BspPI GGATC 1 cut(s) 506
BspQI GCTCTTC 1 cut(s) 714
BsrBI CCGCTC 2 cut(s) 821, 1156
BsrDI GCAATG 3 cut(s) 913, 972, 992
BssECI CCNNGG 2 cut(s) 994, 1262
BssMI GATC 8 cut(s) 28, 346, 406, 511, 634, 793, 1198, 1208
BssT1I CCWWGG 1 cut(s) 994
Bst2UI CCWGG 1 cut(s) 1264
Bst4CI ACNGT 4 cut(s) 37, 452, 471, 769
Bst6I CTCTTC 3 cut(s) 309, 714, 1054
BstAPI GCANNNNNTGC 3 cut(s) 75, 84, 730
BstC8I GCNNGC 1 cut(s) 1079
BstDEI CTNAG 4 cut(s) 336, 343, 497, 1328
BstDSI CCRYGG 1 cut(s) 994
BstFNI CGCG 2 cut(s) 60, 1313
BstKTI GATC 8 cut(s) 31, 349, 409, 514, 637, 796, 1201, 1211
BstMAI GTCTC 1 cut(s) 109
BstMBI GATC 8 cut(s) 28, 346, 406, 511, 634, 793, 1198, 1208
BstMCI CGRYCG 1 cut(s) 1201
BstMWI GCNNNNNNNGC 5 cut(s) 66, 75, 84, 225, 730
BstNI CCWGG 1 cut(s) 1264
BstNSI RCATGY 1 cut(s) 1348
BstSCI CCNGG 1 cut(s) 1262
BstUI CGCG 2 cut(s) 60, 1313
BstV1I GCAGC 2 cut(s) 698, 720
BstX2I RGATCY 1 cut(s) 793
BstXI CCANNNNNNTGG 1 cut(s) 1033
BstYI RGATCY 1 cut(s) 793
Bsu15I ATCGAT 2 cut(s) 51, 675
BsuRI GGCC 1 cut(s) 503
BsuTUI ATCGAT 2 cut(s) 51, 675
BtgI CCRYGG 1 cut(s) 994
BtsIMutI CAGTG 1 cut(s) 551
Cac8I GCNNGC 1 cut(s) 1079
Cfr13I GGNCC 3 cut(s) 158, 501, 741
ClaI ATCGAT 2 cut(s) 51, 675
Csp6I GTAC 1 cut(s) 810
CviAII CATG 6 cut(s) 70, 526, 734, 995, 1224, 1345
CviQI GTAC 1 cut(s) 810
DdeI CTNAG 4 cut(s) 336, 343, 497, 1328
DpnI GATC 8 cut(s) 30, 348, 408, 513, 636, 795, 1200, 1210
DpnII GATC 8 cut(s) 28, 346, 406, 511, 634, 793, 1198, 1208
DraIII CACNNNGTG 1 cut(s) 1314
Eam1104I CTCTTC 3 cut(s) 309, 714, 1054
EarI CTCTTC 3 cut(s) 309, 714, 1054
Ecl136II GAGCTC 1 cut(s) 340
Eco130I CCWWGG 1 cut(s) 994
Eco24I GRGCYC 1 cut(s) 342
Eco32I GATATC 1 cut(s) 877
Eco47I GGWCC 2 cut(s) 158, 741
Eco53kI GAGCTC 1 cut(s) 340
Eco57I CTGAAG 4 cut(s) 76, 520, 575, 738
EcoICRI GAGCTC 1 cut(s) 340
EcoO109I RGGNCCY 1 cut(s) 501
EcoRII CCWGG 1 cut(s) 1262
EcoRV GATATC 1 cut(s) 877
EcoT14I CCWWGG 1 cut(s) 994
EcoT22I ATGCAT 1 cut(s) 89
EcoT38I GRGCYC 1 cut(s) 342
ErhI CCWWGG 1 cut(s) 994
FaeI CATG 6 cut(s) 73, 529, 737, 998, 1227, 1348
FaqI GGGAC 1 cut(s) 1245
FatI CATG 6 cut(s) 69, 525, 733, 994, 1223, 1344
FauI CCCGC 1 cut(s) 1161
FbaI TGATCA 1 cut(s) 406
Fnu4HI GCNGC 2 cut(s) 687, 709
FriOI GRGCYC 1 cut(s) 342
Fsp4HI GCNGC 2 cut(s) 687, 709
FspBI CTAG 2 cut(s) 690, 1257
GluI GCNGC 2 cut(s) 687, 709
GsuI CTGGAG 1 cut(s) 1285
HaeIII GGCC 1 cut(s) 503
HapII CCGG 2 cut(s) 112, 515
Hin1II CATG 6 cut(s) 73, 529, 737, 998, 1227, 1348
HincII GTYRAC 2 cut(s) 321, 1342
HindII GTYRAC 2 cut(s) 321, 1342
HinfI GANTC 9 cut(s) 207, 378, 530, 698, 882, 913, 922, 1303, 1318
HpaI GTTAAC 1 cut(s) 1342
HpaII CCGG 2 cut(s) 112, 515
HphI GGTGA 1 cut(s) 1300
Hpy166II GTNNAC 5 cut(s) 321, 448, 1195, 1221, 1342
Hpy8I GTNNAC 5 cut(s) 321, 448, 1195, 1221, 1342
HpyAV CCTTC 5 cut(s) 191, 209, 353, 544, 883
HpyCH4III ACNGT 4 cut(s) 37, 452, 471, 769
HpyCH4IV ACGT 3 cut(s) 105, 144, 936
HpyF10VI GCNNNNNNNGC 5 cut(s) 66, 75, 84, 225, 730
HpyF3I CTNAG 4 cut(s) 336, 343, 497, 1328
HpySE526I ACGT 3 cut(s) 105, 144, 936
Hsp92II CATG 6 cut(s) 73, 529, 737, 998, 1227, 1348
Kpn2I TCCGGA 1 cut(s) 111
Ksp22I TGATCA 1 cut(s) 406
KspAI GTTAAC 1 cut(s) 1342
Kzo9I GATC 8 cut(s) 28, 346, 406, 511, 634, 793, 1198, 1208
LguI GCTCTTC 1 cut(s) 714
LmnI GCTCC 1 cut(s) 114
Lsp1109I GCAGC 2 cut(s) 698, 720
LweI GCATC 4 cut(s) 96, 592, 601, 733
MaeI CTAG 2 cut(s) 690, 1257
MaeII ACGT 3 cut(s) 105, 144, 936
MaeIII GTNAC 4 cut(s) 331, 482, 1094, 1202
MalI GATC 8 cut(s) 30, 348, 408, 513, 636, 795, 1200, 1210
MbiI CCGCTC 2 cut(s) 821, 1156
MboI GATC 8 cut(s) 28, 346, 406, 511, 634, 793, 1198, 1208
MfeI CAATTG 1 cut(s) 978
MflI RGATCY 1 cut(s) 793
MhlI GDGCHC 2 cut(s) 111, 342
MluCI AATT 9 cut(s) 285, 385, 462, 842, 978, 1067, 1089, 1250, 1269
MlyI GAGTC 4 cut(s) 216, 387, 524, 1327
MmeI TCCRAC 2 cut(s) 271, 919
MnlI CCTC 6 cut(s) 179, 187, 229, 364, 980, 1052
Mph1103I ATGCAT 1 cut(s) 89
MroI TCCGGA 1 cut(s) 111
MseI TTAA 3 cut(s) 665, 840, 1341
MslI CAYNNNNRTG 4 cut(s) 296, 434, 609, 1031
MspI CCGG 2 cut(s) 112, 515
MspR9I CCNGG 1 cut(s) 1264
MunI CAATTG 1 cut(s) 978
Mva1269I GAATGC 1 cut(s) 1332
MvaI CCWGG 1 cut(s) 1264
MvnI CGCG 2 cut(s) 60, 1313
MwoI GCNNNNNNNGC 5 cut(s) 66, 75, 84, 225, 730
NcoI CCATGG 1 cut(s) 994
NdeII GATC 8 cut(s) 28, 346, 406, 511, 634, 793, 1198, 1208
NlaIII CATG 6 cut(s) 73, 529, 737, 998, 1227, 1348
NlaIV GGNNCC 1 cut(s) 968
NsiI ATGCAT 1 cut(s) 89
NspI RCATGY 1 cut(s) 1348
PciSI GCTCTTC 1 cut(s) 714
PcsI WCGNNNNNNNCGW 2 cut(s) 57, 181
PctI GAATGC 1 cut(s) 1332
PfeI GAWTC 5 cut(s) 698, 882, 913, 922, 1303
PkrI GCNGC 2 cut(s) 688, 710
Ple19I CGATCG 1 cut(s) 1201
PleI GAGTC 4 cut(s) 215, 386, 524, 1326
PpsI GAGTC 4 cut(s) 215, 386, 524, 1326
PsiI TTATAA 1 cut(s) 576
Psp124BI GAGCTC 1 cut(s) 342
Psp1406I AACGTT 1 cut(s) 936
Psp6I CCWGG 1 cut(s) 1262
PspGI CCWGG 1 cut(s) 1262
PspN4I GGNNCC 1 cut(s) 968
PspPI GGNCC 3 cut(s) 158, 501, 741
PsuI RGATCY 1 cut(s) 793
PvuI CGATCG 1 cut(s) 1201
RsaI GTAC 1 cut(s) 811
RsaNI GTAC 1 cut(s) 810
RseI CAYNNNNRTG 4 cut(s) 296, 434, 609, 1031
SacI GAGCTC 1 cut(s) 342
SapI GCTCTTC 1 cut(s) 714
SaqAI TTAA 3 cut(s) 665, 840, 1341
SatI GCNGC 2 cut(s) 687, 709
Sau3AI GATC 8 cut(s) 28, 346, 406, 511, 634, 793, 1198, 1208
Sau96I GGNCC 3 cut(s) 158, 501, 741
SchI GAGTC 4 cut(s) 216, 387, 524, 1327
ScrFI CCNGG 1 cut(s) 1264
SduI GDGCHC 2 cut(s) 111, 342
SfaNI GCATC 4 cut(s) 96, 592, 601, 733
SinI GGWCC 2 cut(s) 158, 741
SmiMI CAYNNNNRTG 4 cut(s) 296, 434, 609, 1031
SmlI CTYRAG 2 cut(s) 917, 1238
SmoI CTYRAG 2 cut(s) 917, 1238
Sse9I AATT 9 cut(s) 285, 385, 462, 842, 978, 1067, 1089, 1250, 1269
SsiI CCGC 8 cut(s) 58, 324, 382, 589, 813, 819, 1154, 1311
SspMI CTAG 2 cut(s) 690, 1257
SstI GAGCTC 1 cut(s) 342
StyD4I CCNGG 1 cut(s) 1262
StyI CCWWGG 1 cut(s) 994
TaaI ACNGT 4 cut(s) 37, 452, 471, 769
TaiI ACGT 3 cut(s) 108, 147, 939
TaqI TCGA 7 cut(s) 51, 175, 432, 675, 885, 1100, 1211
TasI AATT 9 cut(s) 285, 385, 462, 842, 978, 1067, 1089, 1250, 1269
TfiI GAWTC 5 cut(s) 698, 882, 913, 922, 1303
Tru1I TTAA 3 cut(s) 665, 840, 1341
Tru9I TTAA 3 cut(s) 665, 840, 1341
TscAI CASTG 1 cut(s) 558
TseI GCWGC 2 cut(s) 686, 708
TspDTI ATGAA 8 cut(s) 86, 155, 297, 314, 372, 418, 750, 1125
TspRI CASTG 1 cut(s) 558
VpaK11BI GGWCC 2 cut(s) 158, 741
XapI RAATTY 4 cut(s) 285, 842, 1250, 1269
XceI RCATGY 1 cut(s) 1348
XspI CTAG 2 cut(s) 690, 1257
Zsp2I ATGCAT 1 cut(s) 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.