Rroxscaffold_5G00336710

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000417
Physical Location & Seq
Reverse (-)
4540986 .. 4548304
7319 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00336710.1

Sequence Viewer

Length: 438 bp
ATGTCTACAAATCATGGGAGTAATGATCATACAGTTATCAATATTGGCAAGAAATGCATCTTCGAGTTCCTAACGTGCTCTACGGACAAAATCCGAAGCATATACACCGACATTGTTTCAATCGGACCTTTTCATCATTATCCGGAAGAGCGAGCCAAGGAGGAAGGTAAAGGAGGCAAAAAACGCAATCGCGAAAAATATTTCCAACTCATGGAAGAAGGTCTTCTACACCCTAGCCACCTAAGCTTGGTGTTTCAATTATGGGGACGGGTGTTGGCCTCCCTCCTAGCGGAGGCTTTCTCTCCCACACCGTTGTATGCTCGCAGCCTTCCAACTTTGGTTTTCTCGACGATCATCCATCAACAACAATTGTTTGGTGCTATCACTGCAGATGCCCCATGCCGAGCAATCTCGTCTCGGCGAGCACAATTAGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

145

Amino Acids

16.3

Weight (kDa)

9.1

Isoelectric Point (pI)

49.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000417)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g32770 FvH4_4g02520 FvH4_4g02520 FvH4_4g02530 FvH4_4g02550 FvH4_4g17730 FvH4_4g17730
rosa_chinensis RchiOBHm_Chr1g0318801 RchiOBHm_Chr4g0390011 RchiOBHm_Chr4g0390031 RchiOBHm_Chr4g0390041 RchiOBHm_Chr4g0390061 RchiOBHm_Chr4g0390091 RchiOBHm_Chr4g0390101 RchiOBHm_Chr4g0390141 RchiOBHm_Chr4g0390181 RchiOBHm_Chr4g0390191 RchiOBHm_Chr4g0390201 RchiOBHm_Chr4g0390231 RchiOBHm_Chr4g0390241 RchiOBHm_Chr4g0390251 RchiOBHm_Chr4g0390661 RchiOBHm_Chr4g0390711 RchiOBHm_Chr4g0390741 RchiOBHm_Chr4g0390771 RchiOBHm_Chr4g0390801 RchiOBHm_Chr5g0058271
rosa_laevigata RLG00000008685 RLG00000009910 RLG00000009930 RLG00000009932 RLG00000009933 RLG00000009934 RLG00000009935 RLG00000009937 RLG00000009938 RLG00000009940 RLG00000035208 RLG00000035209
rosa_multiflora Rmu_co8281525.1_g000001 Rmu_co8464925.1_g000001 Rmu_sc0000171.1_g000023 Rmu_sc0000171.1_g000027 Rmu_sc0000367.1_g000061 Rmu_sc0000679.1_g000027 Rmu_sc0001380.1_g000026 Rmu_sc0001380.1_g000030 Rmu_sc0001471.1_g000010 Rmu_sc0003643.1_g000007 Rmu_sc0004336.1_g000002 Rmu_sc0004336.1_g000011 Rmu_sc0004336.1_g000012 Rmu_sc0005003.1_g000007 Rmu_sc0005003.1_g000012 Rmu_sc0005003.1_g000016 Rmu_sc0005003.1_g000022 Rmu_sc0008322.1_g000002 Rmu_sc0011197.1_g000004 Rmu_sc0014620.1_g000006 Rmu_sc0014620.1_g000017 Rmu_sc0018617.1_g000002
rosa_roxburghii Rroxscaffold_1G00022270 Rroxscaffold_5G00336180 Rroxscaffold_5G00336220 Rroxscaffold_5G00336240 Rroxscaffold_5G00336250 Rroxscaffold_5G00336290 Rroxscaffold_5G00336310 Rroxscaffold_5G00336350 Rroxscaffold_5G00336370 Rroxscaffold_5G00336670 Rroxscaffold_5G00336700 Rroxscaffold_5G00336710
rosa_rugosa Rorug01G0020300 Rorug03G0327700 Rorug03G0327800 Rorug03G0328000 Rorug03G0328100 Rorug03G0328300 Rorug03G0328600 Rorug03G0328600 Rorug03G0331700 Rorug03G0331800 Rorug05G0312900
rosa_samantha Rh4DG024700 Rh4DG024900 Rh4DG025000 Rh4DG025200 Rh4DG025500 Rh4DG025900 Rh4DG026200 Rh4DG030200 Rh5DG407000
rosa_wichuraiana Rw4G002360 Rw4G002410 Rw4G002420 Rw4G002450 Rw4G002480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 211
AccI GTMKAC 1 cut(s) 5
AccII CGCG 1 cut(s) 192
AccIII TCCGGA 1 cut(s) 142
AciI CCGC 1 cut(s) 290
AfiI CCNNNNNNNGG 4 cut(s) 211, 247, 289, 292
AgsI TTSAA 2 cut(s) 120, 257
AluBI AGCT 1 cut(s) 246
AluI AGCT 1 cut(s) 246
Alw21I GWGCWC 2 cut(s) 80, 427
Alw26I GTCTC 1 cut(s) 420
Aor13HI TCCGGA 1 cut(s) 142
AoxI GGCC 1 cut(s) 276
ApeKI GCWGC 1 cut(s) 324
Asp700I GAANNNNTTC 1 cut(s) 222
AspS9I GGNCC 1 cut(s) 125
AvaII GGWCC 1 cut(s) 125
BarI GAAGNNNNNNTAC 2 cut(s) 210, 242
BbsI GAAGAC 1 cut(s) 215
Bbv12I GWGCWC 2 cut(s) 80, 427
BbvI GCAGC 1 cut(s) 336
BccI CCATC 1 cut(s) 366
BclI TGATCA 1 cut(s) 25
BcoDI GTCTC 1 cut(s) 420
BfaI CTAG 2 cut(s) 234, 287
BfmI CTRYAG 1 cut(s) 387
BisI GCNGC 1 cut(s) 325
BlsI GCNGC 1 cut(s) 326
Bme18I GGWCC 1 cut(s) 125
BmgT120I GGNCC 1 cut(s) 125
BmsI GCATC 2 cut(s) 66, 382
BpiI GAAGAC 1 cut(s) 215
BplI GAGNNNNNCTC 2 cut(s) 284, 316
Bpu10I CCTNAGC 1 cut(s) 242
BsaJI CCNNGG 1 cut(s) 156
BsaWI WCCGGW 1 cut(s) 142
Bsc4I CCNNNNNNNGG 4 cut(s) 211, 247, 289, 292
BseAI TCCGGA 1 cut(s) 142
BseDI CCNNGG 1 cut(s) 156
BseGI GGATG 1 cut(s) 354
BseLI CCNNNNNNNGG 4 cut(s) 211, 247, 289, 292
BseXI GCAGC 1 cut(s) 336
Bsh1236I CGCG 1 cut(s) 192
BshFI GGCC 1 cut(s) 278
BsiHKAI GWGCWC 2 cut(s) 80, 427
BsiSI CCGG 1 cut(s) 143
BslFI GGGAC 1 cut(s) 279
BslI CCNNNNNNNGG 4 cut(s) 211, 247, 289, 292
BsmAI GTCTC 1 cut(s) 420
BsmBI CGTCTC 1 cut(s) 420
BsmFI GGGAC 1 cut(s) 279
BsnI GGCC 1 cut(s) 278
Bsp1286I GDGCHC 2 cut(s) 80, 427
Bsp13I TCCGGA 1 cut(s) 142
Bsp143I GATC 2 cut(s) 25, 351
Bsp68I TCGCGA 1 cut(s) 192
BspACI CCGC 1 cut(s) 290
BspANI GGCC 1 cut(s) 278
BspEI TCCGGA 1 cut(s) 142
BspFNI CGCG 1 cut(s) 192
BspMAI CTGCAG 1 cut(s) 391
BspQI GCTCTTC 1 cut(s) 141
BssECI CCNNGG 1 cut(s) 156
BssMI GATC 2 cut(s) 25, 351
BssT1I CCWWGG 1 cut(s) 156
Bst4CI ACNGT 2 cut(s) 34, 312
Bst6I CTCTTC 1 cut(s) 141
BstAPI GCANNNNNTGC 1 cut(s) 54
BstC8I GCNNGC 3 cut(s) 153, 322, 423
BstDEI CTNAG 1 cut(s) 242
BstENI CCTNNNNNAGG 1 cut(s) 290
BstF5I GGATG 1 cut(s) 354
BstFNI CGCG 1 cut(s) 192
BstKTI GATC 2 cut(s) 28, 354
BstMAI GTCTC 1 cut(s) 420
BstMBI GATC 2 cut(s) 25, 351
BstMWI GCNNNNNNNGC 5 cut(s) 54, 183, 243, 386, 431
BstSFI CTRYAG 1 cut(s) 387
BstUI CGCG 1 cut(s) 192
BstV1I GCAGC 1 cut(s) 336
BstV2I GAAGAC 1 cut(s) 215
BsuRI GGCC 1 cut(s) 278
BtsCI GGATG 1 cut(s) 354
BtsI GCAGTG 1 cut(s) 384
BtsIMutI CAGTG 1 cut(s) 384
BtuMI TCGCGA 1 cut(s) 192
Cac8I GCNNGC 3 cut(s) 153, 322, 423
Cfr13I GGNCC 1 cut(s) 125
CviAII CATG 3 cut(s) 14, 211, 399
CviJI RGCY 6 cut(s) 155, 237, 246, 278, 296, 327
CviKI_1 RGCY 6 cut(s) 155, 237, 246, 278, 296, 327
DdeI CTNAG 1 cut(s) 242
DpnI GATC 2 cut(s) 27, 353
DpnII GATC 2 cut(s) 25, 351
Eam1104I CTCTTC 1 cut(s) 141
EarI CTCTTC 1 cut(s) 141
Eco130I CCWWGG 1 cut(s) 156
Eco47I GGWCC 1 cut(s) 125
EcoNI CCTNNNNNAGG 1 cut(s) 290
EcoT14I CCWWGG 1 cut(s) 156
EcoT22I ATGCAT 1 cut(s) 59
ErhI CCWWGG 1 cut(s) 156
Esp3I CGTCTC 1 cut(s) 420
FaeI CATG 3 cut(s) 17, 214, 402
FaiI YATR 9 cut(s) 15, 30, 101, 103, 212, 262, 318, 400, 436
FalI AAGNNNNNCTT 2 cut(s) 207, 239
FaqI GGGAC 1 cut(s) 279
FatI CATG 3 cut(s) 13, 210, 398
FbaI TGATCA 1 cut(s) 25
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 1 cut(s) 325
FokI GGATG 1 cut(s) 341
Fsp4HI GCNGC 1 cut(s) 325
FspBI CTAG 2 cut(s) 234, 287
GluI GCNGC 1 cut(s) 325
HaeIII GGCC 1 cut(s) 278
HapII CCGG 1 cut(s) 143
Hin1II CATG 3 cut(s) 17, 214, 402
HindIII AAGCTT 1 cut(s) 244
HpaII CCGG 1 cut(s) 143
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 2 cut(s) 95, 125
Hpy188III TCNNGA 3 cut(s) 143, 191, 346
Hpy8I GTNNAC 1 cut(s) 6
Hpy99I CGWCG 1 cut(s) 352
HpyAV CCTTC 3 cut(s) 158, 212, 338
HpyCH4III ACNGT 2 cut(s) 34, 312
HpyCH4IV ACGT 1 cut(s) 74
HpyCH4V TGCA 2 cut(s) 57, 389
HpyF10VI GCNNNNNNNGC 5 cut(s) 54, 183, 243, 386, 431
HpyF3I CTNAG 1 cut(s) 242
HpySE526I ACGT 1 cut(s) 74
Hsp92II CATG 3 cut(s) 17, 214, 402
Kpn2I TCCGGA 1 cut(s) 142
Ksp22I TGATCA 1 cut(s) 25
Kzo9I GATC 2 cut(s) 25, 351
LguI GCTCTTC 1 cut(s) 141
LpnPI CCDG 1 cut(s) 156
Lsp1109I GCAGC 1 cut(s) 336
LweI GCATC 2 cut(s) 66, 382
MaeI CTAG 2 cut(s) 234, 287
MaeII ACGT 1 cut(s) 74
MalI GATC 2 cut(s) 27, 353
MboI GATC 2 cut(s) 25, 351
MboII GAAGA 4 cut(s) 52, 158, 215, 227
MfeI CAATTG 1 cut(s) 368
MhlI GDGCHC 2 cut(s) 80, 427
MluCI AATT 3 cut(s) 257, 368, 428
MmeI TCCRAC 2 cut(s) 229, 356
MnlI CCTC 5 cut(s) 154, 167, 286, 289, 293
Mph1103I ATGCAT 1 cut(s) 59
MroI TCCGGA 1 cut(s) 142
MroXI GAANNNNTTC 1 cut(s) 222
MspI CCGG 1 cut(s) 143
MunI CAATTG 1 cut(s) 368
MvnI CGCG 1 cut(s) 192
MwoI GCNNNNNNNGC 5 cut(s) 54, 183, 243, 386, 431
NdeII GATC 2 cut(s) 25, 351
NlaIII CATG 3 cut(s) 17, 214, 402
NmeAIII GCCGAG 2 cut(s) 397, 428
NruI TCGCGA 1 cut(s) 192
NsiI ATGCAT 1 cut(s) 59
PciSI GCTCTTC 1 cut(s) 141
PdmI GAANNNNTTC 1 cut(s) 222
PflMI CCANNNNNTGG 1 cut(s) 211
PkrI GCNGC 1 cut(s) 326
PspPI GGNCC 1 cut(s) 125
PstI CTGCAG 1 cut(s) 391
RruI TCGCGA 1 cut(s) 192
SapI GCTCTTC 1 cut(s) 141
SatI GCNGC 1 cut(s) 325
Sau3AI GATC 2 cut(s) 25, 351
Sau96I GGNCC 1 cut(s) 125
SduI GDGCHC 2 cut(s) 80, 427
SetI ASST 6 cut(s) 77, 130, 169, 223, 243, 248
SfaNI GCATC 2 cut(s) 66, 382
SfcI CTRYAG 1 cut(s) 387
SinI GGWCC 1 cut(s) 125
Sse9I AATT 3 cut(s) 257, 368, 428
SsiI CCGC 1 cut(s) 290
SspI AATATT 2 cut(s) 43, 200
SspMI CTAG 2 cut(s) 234, 287
StyI CCWWGG 1 cut(s) 156
TaaI ACNGT 2 cut(s) 34, 312
TaiI ACGT 1 cut(s) 77
TaqI TCGA 2 cut(s) 63, 347
TasI AATT 3 cut(s) 257, 368, 428
TscAI CASTG 1 cut(s) 391
TseI GCWGC 1 cut(s) 324
TspDTI ATGAA 1 cut(s) 122
TspGWI ACGGA 1 cut(s) 98
TspRI CASTG 1 cut(s) 391
Van91I CCANNNNNTGG 1 cut(s) 211
VpaK11BI GGWCC 1 cut(s) 125
XagI CCTNNNNNAGG 1 cut(s) 290
XmiI GTMKAC 1 cut(s) 5
XmnI GAANNNNTTC 1 cut(s) 222
XspI CTAG 2 cut(s) 234, 287
Zsp2I ATGCAT 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.