Rroxscaffold_5G00336240

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000417
Physical Location & Seq
Reverse (-)
3990049 .. 3991589
1541 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00336240.1

Sequence Viewer

Length: 1377 bp
ATGGCTGCAAATCACAGAAGTGGTAGAGATCAAACGGCTATTGATATTGGCGATGACTGTAAAAAATGCAAGAAATGCATCTTCAGAGTTCCTAAGGTGCTCCGCAGACAAAACCCAGAAGCATATACACCTGATGTTGTTTCAGTCGGACCTTTTCATTTCCGAGGGAAGCGAGTCAAGGAGGAAGCAGGTAATGAAGACAAGAAAGACAAAGAAGGCAAGGAAGCAAAAGAAGGCAACGAAGGCAAATGCGAGGAAGATTTCCAACTCATGGAACGAGTGAAAGAGAGATATGTGAAAGAAATTCTCTCAGATATGAAGAATATAACTTTGAAAGAGTTGACCGCAGAAGTCATTAAGCTCTCAGATCAAAAGAATGAAGGCGGGTTTGAGCAACGCGCCCGCGATTTTTATGCAGAACCATTTGGTCATATTTCCTCGGAAGACTTCATAGAGATGATGATAGTTGACGGTTGCTTCCTAATTCAACTGTTCCGGAAGTGTAACGATCTGAAACTCAGGGCCTTTGATGACCCGATATTCAACATGGATTGCATGTTTCATTTCCTATGCCATGACATTTTGCTCCTAGAGAATCAACTACCTTGGTTTGTCATCCACAGTTTATACGGCCTTACCTTTGAAATATACCATGATGAAACCTCCCTCTCTATTCTCATCCTTAAAGCCTTCAGCATACTACCATCGCTGAAGCAATGTTGCTCAACCTATAATACCCATCTTAGTAAAATCAAGTGTCATTGTGATGCTGATGTTCTGCACATACTTGATTTGGTAAGAGCTTCCATTGTTATTCCATTAAGAACCATAGAAGAGAGAGCGCACAAAGCAGCTGGTAAAGAAGGTATATCCAACCCAGAAGAACATCAAATGCATACTGCAAAGGCAAATCAAAGGCAGATCAGTCCTGAAGGCAAGAGCGACAATAAAGCTGTTCGTAAAGCTAATTTTGACCCAGATCAACATCAAATGCATACCGCGACAGCTCTCTCGAAGGCAGACATTAAATTCCAACCTGTCATAAAGGAGAGCATAATGGACATCCGATTCAAGAAGGAAGATATGGAATTACTCTGCAAGGAAAAAGTAATAGGTAACTGGCTGAGTGATGAAGATGGTTGTAAGTTCTTCAGCAACCTTTACAAGGACATCCCGCACAACAAATTCTACTATAGTGCTCTCTGCAAGCAAGTGAATGATCGTTACAAACTGAGGCGGTATACATGGTTGGCTTCACTCAAGAGTGACAAATTTTCCAACCCCTGGAAAATTTTGGCTCTCGTGATAGGTATTATCGTTTTGATGCTCAGCATATGGAGTCAGACAAACAACATCCGGGCTTCCTTGCAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

458

Amino Acids

52.98

Weight (kDa)

8.06

Isoelectric Point (pI)

39.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 27 - 358 2.8e-53 Plant protein of unknown function
DUF247 PF03140 359 - 443 7e-17 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000417)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g32770 FvH4_4g02520 FvH4_4g02520 FvH4_4g02530 FvH4_4g02550 FvH4_4g17730 FvH4_4g17730
rosa_chinensis RchiOBHm_Chr1g0318801 RchiOBHm_Chr4g0390011 RchiOBHm_Chr4g0390031 RchiOBHm_Chr4g0390041 RchiOBHm_Chr4g0390061 RchiOBHm_Chr4g0390091 RchiOBHm_Chr4g0390101 RchiOBHm_Chr4g0390141 RchiOBHm_Chr4g0390181 RchiOBHm_Chr4g0390191 RchiOBHm_Chr4g0390201 RchiOBHm_Chr4g0390231 RchiOBHm_Chr4g0390241 RchiOBHm_Chr4g0390251 RchiOBHm_Chr4g0390661 RchiOBHm_Chr4g0390711 RchiOBHm_Chr4g0390741 RchiOBHm_Chr4g0390771 RchiOBHm_Chr4g0390801 RchiOBHm_Chr5g0058271
rosa_laevigata RLG00000008685 RLG00000009910 RLG00000009930 RLG00000009932 RLG00000009933 RLG00000009934 RLG00000009935 RLG00000009937 RLG00000009938 RLG00000009940 RLG00000035208 RLG00000035209
rosa_multiflora Rmu_co8281525.1_g000001 Rmu_co8464925.1_g000001 Rmu_sc0000171.1_g000023 Rmu_sc0000171.1_g000027 Rmu_sc0000367.1_g000061 Rmu_sc0000679.1_g000027 Rmu_sc0001380.1_g000026 Rmu_sc0001380.1_g000030 Rmu_sc0001471.1_g000010 Rmu_sc0003643.1_g000007 Rmu_sc0004336.1_g000002 Rmu_sc0004336.1_g000011 Rmu_sc0004336.1_g000012 Rmu_sc0005003.1_g000007 Rmu_sc0005003.1_g000012 Rmu_sc0005003.1_g000016 Rmu_sc0005003.1_g000022 Rmu_sc0008322.1_g000002 Rmu_sc0011197.1_g000004 Rmu_sc0014620.1_g000006 Rmu_sc0014620.1_g000017 Rmu_sc0018617.1_g000002
rosa_roxburghii Rroxscaffold_1G00022270 Rroxscaffold_5G00336180 Rroxscaffold_5G00336220 Rroxscaffold_5G00336240 Rroxscaffold_5G00336250 Rroxscaffold_5G00336290 Rroxscaffold_5G00336310 Rroxscaffold_5G00336350 Rroxscaffold_5G00336370 Rroxscaffold_5G00336670 Rroxscaffold_5G00336700 Rroxscaffold_5G00336710
rosa_rugosa Rorug01G0020300 Rorug03G0327700 Rorug03G0327800 Rorug03G0328000 Rorug03G0328100 Rorug03G0328300 Rorug03G0328600 Rorug03G0328600 Rorug03G0331700 Rorug03G0331800 Rorug05G0312900
rosa_samantha Rh4DG024700 Rh4DG024900 Rh4DG025000 Rh4DG025200 Rh4DG025500 Rh4DG025900 Rh4DG026200 Rh4DG030200 Rh5DG407000
rosa_wichuraiana Rw4G002360 Rw4G002410 Rw4G002420 Rw4G002450 Rw4G002480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 179
AccB7I CCANNNNNTGG 2 cut(s) 271, 1284
AccI GTMKAC 1 cut(s) 1241
AccII CGCG 3 cut(s) 399, 405, 1001
AccIII TCCGGA 1 cut(s) 495
AciI CCGC 7 cut(s) 103, 345, 384, 403, 999, 1175, 1237
AcsI RAATTY 5 cut(s) 303, 1028, 1184, 1271, 1290
AcuI CTGAAG 5 cut(s) 67, 676, 731, 951, 1135
AfiI CCNNNNNNNGG 3 cut(s) 271, 1165, 1284
AgsI TTSAA 5 cut(s) 334, 488, 544, 644, 1072
AjnI CCWGG 1 cut(s) 1283
AleI CACNNNNGTG 1 cut(s) 18
AluBI AGCT 6 cut(s) 361, 803, 854, 953, 965, 1007
AluI AGCT 6 cut(s) 361, 803, 854, 953, 965, 1007
Alw21I GWGCWC 2 cut(s) 102, 1201
Aor13HI TCCGGA 1 cut(s) 495
AoxI GGCC 2 cut(s) 522, 631
ApeKI GCWGC 2 cut(s) 5, 851
ApoI RAATTY 5 cut(s) 303, 1028, 1184, 1271, 1290
AspLEI GCGC 2 cut(s) 401, 844
AspS9I GGNCC 2 cut(s) 149, 522
AsuC2I CCSGG 1 cut(s) 1358
AvaII GGWCC 1 cut(s) 149
AxyI CCTNAGG 1 cut(s) 93
BauI CACGAG 1 cut(s) 1301
BbsI GAAGAC 2 cut(s) 204, 450
Bbv12I GWGCWC 2 cut(s) 102, 1201
BbvI GCAGC 1 cut(s) 863
BccI CCATC 3 cut(s) 712, 747, 1130
BceAI ACGGC 2 cut(s) 51, 646
BcgI CGANNNNNNTGC 2 cut(s) 395, 429
BciT130I CCWGG 1 cut(s) 1285
BcnI CCSGG 1 cut(s) 1358
BfaI CTAG 1 cut(s) 590
BfmI CTRYAG 1 cut(s) 1192
BfuAI ACCTGC 1 cut(s) 179
BisI GCNGC 2 cut(s) 6, 852
BlpI GCTNAGC 1 cut(s) 1328
BlsI GCNGC 2 cut(s) 7, 853
Bme1390I CCNGG 2 cut(s) 1285, 1358
Bme18I GGWCC 1 cut(s) 149
BmgT120I GGNCC 2 cut(s) 149, 522
BmrFI CCNGG 2 cut(s) 1285, 1358
BmsI GCATC 3 cut(s) 87, 757, 1314
BpiI GAAGAC 2 cut(s) 204, 450
Bpu1102I GCTNAGC 1 cut(s) 1328
BpuEI CTTGAG 1 cut(s) 1244
BpuMI CCSGG 1 cut(s) 1358
BsaBI GATNNNNATC 1 cut(s) 984
BsaJI CCNNGG 4 cut(s) 163, 438, 605, 1283
BsaWI WCCGGW 1 cut(s) 495
Bsc4I CCNNNNNNNGG 3 cut(s) 271, 1165, 1284
Bse1I ACTGG 1 cut(s) 1124
Bse21I CCTNAGG 1 cut(s) 93
Bse3DI GCAATG 1 cut(s) 722
Bse8I GATNNNNATC 1 cut(s) 984
BseAI TCCGGA 1 cut(s) 495
BseBI CCWGG 1 cut(s) 1285
BseDI CCNNGG 4 cut(s) 163, 438, 605, 1283
BseGI GGATG 5 cut(s) 615, 678, 1062, 1170, 1353
BseJI GATNNNNATC 1 cut(s) 984
BseLI CCNNNNNNNGG 3 cut(s) 271, 1165, 1284
BseMI GCAATG 1 cut(s) 722
BseMII CTCAG 6 cut(s) 324, 378, 532, 1115, 1223, 1342
BseNI ACTGG 1 cut(s) 1124
BseXI GCAGC 1 cut(s) 863
BsgI GTGCAG 1 cut(s) 764
Bsh1236I CGCG 3 cut(s) 399, 405, 1001
BshFI GGCC 2 cut(s) 524, 633
BsiHKAI GWGCWC 2 cut(s) 102, 1201
BsiSI CCGG 2 cut(s) 496, 1357
BslI CCNNNNNNNGG 3 cut(s) 271, 1165, 1284
BsnI GGCC 2 cut(s) 524, 633
Bsp1286I GDGCHC 2 cut(s) 102, 1201
Bsp13I TCCGGA 1 cut(s) 495
Bsp143I GATC 6 cut(s) 28, 367, 508, 921, 979, 1219
Bsp1720I GCTNAGC 1 cut(s) 1328
BspACI CCGC 7 cut(s) 103, 345, 384, 403, 999, 1175, 1237
BspANI GGCC 2 cut(s) 524, 633
BspCNI CTCAG 6 cut(s) 323, 377, 531, 1116, 1224, 1341
BspEI TCCGGA 1 cut(s) 495
BspFNI CGCG 3 cut(s) 399, 405, 1001
BspMI ACCTGC 1 cut(s) 179
BsrDI GCAATG 1 cut(s) 722
BsrI ACTGG 1 cut(s) 1124
BssECI CCNNGG 4 cut(s) 163, 438, 605, 1283
BssMI GATC 6 cut(s) 28, 367, 508, 921, 979, 1219
BssNAI GTATAC 1 cut(s) 1242
BssSI CACGAG 1 cut(s) 1301
BssT1I CCWWGG 1 cut(s) 605
Bst1107I GTATAC 1 cut(s) 1242
Bst2BI CACGAG 1 cut(s) 1301
Bst2UI CCWGG 1 cut(s) 1285
Bst4CI ACNGT 4 cut(s) 59, 473, 492, 623
Bst6I CTCTTC 1 cut(s) 828
BstAPI GCANNNNNTGC 1 cut(s) 75
BstC8I GCNNGC 2 cut(s) 403, 1208
BstDEI CTNAG 8 cut(s) 93, 310, 364, 518, 743, 1124, 1232, 1328
BstENI CCTNNNNNAGG 1 cut(s) 1163
BstF5I GGATG 5 cut(s) 615, 678, 1062, 1170, 1353
BstFNI CGCG 3 cut(s) 399, 405, 1001
BstHHI GCGC 2 cut(s) 401, 844
BstKTI GATC 6 cut(s) 31, 370, 511, 924, 982, 1222
BstMBI GATC 6 cut(s) 28, 367, 508, 921, 979, 1219
BstMWI GCNNNNNNNGC 3 cut(s) 75, 243, 848
BstNI CCWGG 1 cut(s) 1285
BstNSI RCATGY 1 cut(s) 559
BstSCI CCNGG 2 cut(s) 1283, 1356
BstSFI CTRYAG 1 cut(s) 1192
BstUI CGCG 3 cut(s) 399, 405, 1001
BstV1I GCAGC 1 cut(s) 863
BstV2I GAAGAC 2 cut(s) 204, 450
BstZ17I GTATAC 1 cut(s) 1242
Bsu36I CCTNAGG 1 cut(s) 93
BsuRI GGCC 2 cut(s) 524, 633
BtgZI GCGATG 2 cut(s) 66, 690
BtsCI GGATG 5 cut(s) 615, 678, 1062, 1170, 1353
BveI ACCTGC 1 cut(s) 179
Cac8I GCNNGC 2 cut(s) 403, 1208
CfoI GCGC 2 cut(s) 401, 844
Cfr13I GGNCC 2 cut(s) 149, 522
CviAII CATG 6 cut(s) 271, 547, 556, 575, 653, 1245
DdeI CTNAG 8 cut(s) 93, 310, 364, 518, 743, 1124, 1232, 1328
DpnI GATC 6 cut(s) 30, 369, 510, 923, 981, 1221
DpnII GATC 6 cut(s) 28, 367, 508, 921, 979, 1219
Eam1104I CTCTTC 1 cut(s) 828
EarI CTCTTC 1 cut(s) 828
Eco130I CCWWGG 1 cut(s) 605
Eco47I GGWCC 1 cut(s) 149
Eco57I CTGAAG 5 cut(s) 67, 676, 731, 951, 1135
Eco81I CCTNAGG 1 cut(s) 93
EcoNI CCTNNNNNAGG 1 cut(s) 1163
EcoO109I RGGNCCY 1 cut(s) 522
EcoRII CCWGG 1 cut(s) 1283
EcoT14I CCWWGG 1 cut(s) 605
EcoT22I ATGCAT 3 cut(s) 80, 897, 996
ErhI CCWWGG 1 cut(s) 605
FaeI CATG 6 cut(s) 274, 550, 559, 578, 656, 1248
FatI CATG 6 cut(s) 270, 546, 555, 574, 652, 1244
FauI CCCGC 3 cut(s) 377, 410, 1182
FauNDI CATATG 1 cut(s) 1334
FblI GTMKAC 1 cut(s) 1241
Fnu4HI GCNGC 2 cut(s) 6, 852
FokI GGATG 5 cut(s) 602, 665, 1049, 1157, 1340
Fsp4HI GCNGC 2 cut(s) 6, 852
FspBI CTAG 1 cut(s) 590
GlaI GCGC 2 cut(s) 400, 843
GluI GCNGC 2 cut(s) 6, 852
HaeIII GGCC 2 cut(s) 524, 633
HapII CCGG 2 cut(s) 496, 1357
HhaI GCGC 2 cut(s) 401, 844
Hin1II CATG 6 cut(s) 274, 550, 559, 578, 656, 1248
Hin6I GCGC 2 cut(s) 399, 842
HinP1I GCGC 2 cut(s) 399, 842
HincII GTYRAC 2 cut(s) 342, 469
HindII GTYRAC 2 cut(s) 342, 469
HinfI GANTC 4 cut(s) 174, 595, 1068, 1339
HpaII CCGG 2 cut(s) 496, 1357
Hpy166II GTNNAC 3 cut(s) 342, 469, 1242
Hpy188I TCNGA 9 cut(s) 86, 149, 164, 313, 367, 442, 513, 1067, 1344
Hpy188III TCNNGA 6 cut(s) 496, 929, 1012, 1072, 1261, 1303
Hpy8I GTNNAC 3 cut(s) 342, 469, 1242
HpyAV CCTTC 9 cut(s) 209, 227, 236, 374, 700, 857, 926, 1009, 1069
HpyCH4III ACNGT 4 cut(s) 59, 473, 492, 623
HpyF10VI GCNNNNNNNGC 3 cut(s) 75, 243, 848
HpyF3I CTNAG 8 cut(s) 93, 310, 364, 518, 743, 1124, 1232, 1328
Hsp92II CATG 6 cut(s) 274, 550, 559, 578, 656, 1248
HspAI GCGC 2 cut(s) 399, 842
Kpn2I TCCGGA 1 cut(s) 495
Kzo9I GATC 6 cut(s) 28, 367, 508, 921, 979, 1219
LmnI GCTCC 2 cut(s) 105, 591
Lsp1109I GCAGC 1 cut(s) 863
LweI GCATC 3 cut(s) 87, 757, 1314
MaeI CTAG 1 cut(s) 590
MaeIII GTNAC 4 cut(s) 503, 1115, 1223, 1265
MalI GATC 6 cut(s) 30, 369, 510, 923, 981, 1221
MboI GATC 6 cut(s) 28, 367, 508, 921, 979, 1219
MhlI GDGCHC 2 cut(s) 102, 1201
MluCI AATT 8 cut(s) 303, 483, 967, 1028, 1088, 1184, 1271, 1290
MlyI GAGTC 2 cut(s) 183, 1348
MmeI TCCRAC 5 cut(s) 127, 289, 897, 1057, 1302
MnlI CCTC 7 cut(s) 158, 175, 247, 448, 673, 677, 1227
Mph1103I ATGCAT 3 cut(s) 80, 897, 996
MroI TCCGGA 1 cut(s) 495
MseI TTAA 4 cut(s) 357, 684, 821, 1026
MslI CAYNNNNRTG 3 cut(s) 18, 455, 765
MspA1I CMGCKG 1 cut(s) 854
MspI CCGG 2 cut(s) 496, 1357
MspR9I CCNGG 2 cut(s) 1285, 1358
MvaI CCWGG 1 cut(s) 1285
MvnI CGCG 3 cut(s) 399, 405, 1001
MwoI GCNNNNNNNGC 3 cut(s) 75, 243, 848
NciI CCSGG 1 cut(s) 1358
NdeI CATATG 1 cut(s) 1334
NdeII GATC 6 cut(s) 28, 367, 508, 921, 979, 1219
NlaIII CATG 6 cut(s) 274, 550, 559, 578, 656, 1248
NmuCI GTSAC 1 cut(s) 1265
NsiI ATGCAT 3 cut(s) 80, 897, 996
NspI RCATGY 1 cut(s) 559
OliI CACNNNNGTG 1 cut(s) 18
PfeI GAWTC 2 cut(s) 595, 1068
PflMI CCANNNNNTGG 2 cut(s) 271, 1284
PkrI GCNGC 2 cut(s) 7, 853
PleI GAGTC 2 cut(s) 182, 1347
PpsI GAGTC 2 cut(s) 182, 1347
Psp6I CCWGG 1 cut(s) 1283
PspGI CCWGG 1 cut(s) 1283
PspPI GGNCC 2 cut(s) 149, 522
PvuII CAGCTG 1 cut(s) 854
RseI CAYNNNNRTG 3 cut(s) 18, 455, 765
SaqAI TTAA 4 cut(s) 357, 684, 821, 1026
SatI GCNGC 2 cut(s) 6, 852
Sau3AI GATC 6 cut(s) 28, 367, 508, 921, 979, 1219
Sau96I GGNCC 2 cut(s) 149, 522
SchI GAGTC 2 cut(s) 183, 1348
ScrFI CCNGG 2 cut(s) 1285, 1358
SduI GDGCHC 2 cut(s) 102, 1201
SfaNI GCATC 3 cut(s) 87, 757, 1314
SfcI CTRYAG 1 cut(s) 1192
SinI GGWCC 1 cut(s) 149
SmiMI CAYNNNNRTG 3 cut(s) 18, 455, 765
SmlI CTYRAG 1 cut(s) 1259
SmoI CTYRAG 1 cut(s) 1259
Sse9I AATT 8 cut(s) 303, 483, 967, 1028, 1088, 1184, 1271, 1290
SsiI CCGC 7 cut(s) 103, 345, 384, 403, 999, 1175, 1237
SspMI CTAG 1 cut(s) 590
StyD4I CCNGG 2 cut(s) 1283, 1356
StyI CCWWGG 1 cut(s) 605
TaaI ACNGT 4 cut(s) 59, 473, 492, 623
TaqI TCGA 1 cut(s) 1013
TasI AATT 8 cut(s) 303, 483, 967, 1028, 1088, 1184, 1271, 1290
TfiI GAWTC 2 cut(s) 595, 1068
Tru1I TTAA 4 cut(s) 357, 684, 821, 1026
Tru9I TTAA 4 cut(s) 357, 684, 821, 1026
TseFI GTSAC 1 cut(s) 1265
TseI GCWGC 2 cut(s) 5, 851
Tsp45I GTSAC 1 cut(s) 1265
TspDTI ATGAA 8 cut(s) 146, 210, 332, 393, 439, 551, 672, 1146
Van91I CCANNNNNTGG 2 cut(s) 271, 1284
VpaK11BI GGWCC 1 cut(s) 149
XagI CCTNNNNNAGG 1 cut(s) 1163
XapI RAATTY 5 cut(s) 303, 1028, 1184, 1271, 1290
XceI RCATGY 1 cut(s) 559
XmiI GTMKAC 1 cut(s) 1241
XspI CTAG 1 cut(s) 590
Zsp2I ATGCAT 3 cut(s) 80, 897, 996
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.