RLG00000035209

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000417
Physical Location & Seq
Forward (+)
62889015 .. 62889420
406 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035209

Sequence Viewer

Length: 312 bp
ATGGATAACCTCATCTCTTCCCAAGAAGATATGGAATTACTTTGTAAGACAAAAGTAATAGGTAACTGGCTGAGCGATGAAGAGGGTTGCAATTTCTTCAACAACCTTTACAAAGGCATCCCGCGCACAAAGTTCTACTATGGTCCTCTCTGCAAGAAAGTGAAGAAACGTTACGAAATGAATTGCTATGGAACAGCACAAATAGCCTCCGATCCTTCAGGAAGCAAAACCATGGTTTTTGACATCTTCTTCCAAGTTGAATTTCAGCCAATTGTGGCTTTTCTCCTCGTGAACATCGCCTTTGGTTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

104

Amino Acids

11.85

Weight (kDa)

6.19

Isoelectric Point (pI)

24.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 1 - 61 3.2e-11 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000417)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g32770 FvH4_4g02520 FvH4_4g02520 FvH4_4g02530 FvH4_4g02550 FvH4_4g17730 FvH4_4g17730
rosa_chinensis RchiOBHm_Chr1g0318801 RchiOBHm_Chr4g0390011 RchiOBHm_Chr4g0390031 RchiOBHm_Chr4g0390041 RchiOBHm_Chr4g0390061 RchiOBHm_Chr4g0390091 RchiOBHm_Chr4g0390101 RchiOBHm_Chr4g0390141 RchiOBHm_Chr4g0390181 RchiOBHm_Chr4g0390191 RchiOBHm_Chr4g0390201 RchiOBHm_Chr4g0390231 RchiOBHm_Chr4g0390241 RchiOBHm_Chr4g0390251 RchiOBHm_Chr4g0390661 RchiOBHm_Chr4g0390711 RchiOBHm_Chr4g0390741 RchiOBHm_Chr4g0390771 RchiOBHm_Chr4g0390801 RchiOBHm_Chr5g0058271
rosa_laevigata RLG00000008685 RLG00000009910 RLG00000009930 RLG00000009932 RLG00000009933 RLG00000009934 RLG00000009935 RLG00000009937 RLG00000009938 RLG00000009940 RLG00000035208 RLG00000035209
rosa_multiflora Rmu_co8281525.1_g000001 Rmu_co8464925.1_g000001 Rmu_sc0000171.1_g000023 Rmu_sc0000171.1_g000027 Rmu_sc0000367.1_g000061 Rmu_sc0000679.1_g000027 Rmu_sc0001380.1_g000026 Rmu_sc0001380.1_g000030 Rmu_sc0001471.1_g000010 Rmu_sc0003643.1_g000007 Rmu_sc0004336.1_g000002 Rmu_sc0004336.1_g000011 Rmu_sc0004336.1_g000012 Rmu_sc0005003.1_g000007 Rmu_sc0005003.1_g000012 Rmu_sc0005003.1_g000016 Rmu_sc0005003.1_g000022 Rmu_sc0008322.1_g000002 Rmu_sc0011197.1_g000004 Rmu_sc0014620.1_g000006 Rmu_sc0014620.1_g000017 Rmu_sc0018617.1_g000002
rosa_roxburghii Rroxscaffold_1G00022270 Rroxscaffold_5G00336180 Rroxscaffold_5G00336220 Rroxscaffold_5G00336240 Rroxscaffold_5G00336250 Rroxscaffold_5G00336290 Rroxscaffold_5G00336310 Rroxscaffold_5G00336350 Rroxscaffold_5G00336370 Rroxscaffold_5G00336670 Rroxscaffold_5G00336700 Rroxscaffold_5G00336710
rosa_rugosa Rorug01G0020300 Rorug03G0327700 Rorug03G0327800 Rorug03G0328000 Rorug03G0328100 Rorug03G0328300 Rorug03G0328600 Rorug03G0328600 Rorug03G0331700 Rorug03G0331800 Rorug05G0312900
rosa_samantha Rh4DG024700 Rh4DG024900 Rh4DG025000 Rh4DG025200 Rh4DG025500 Rh4DG025900 Rh4DG026200 Rh4DG030200 Rh5DG407000
rosa_wichuraiana Rw4G002360 Rw4G002410 Rw4G002420 Rw4G002450 Rw4G002480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 124
AciI CCGC 1 cut(s) 122
AclI AACGTT 1 cut(s) 169
AclWI GGATC 1 cut(s) 206
AcsI RAATTY 1 cut(s) 260
AcuI CTGAAG 1 cut(s) 201
AgsI TTSAA 2 cut(s) 100, 260
AjuI GAANNNNNNNTTGG 2 cut(s) 246, 278
AlwI GGATC 1 cut(s) 206
ApoI RAATTY 1 cut(s) 260
AspLEI GCGC 1 cut(s) 126
AspS9I GGNCC 1 cut(s) 143
AvaII GGWCC 1 cut(s) 143
BarI GAAGNNNNNNTAC 2 cut(s) 155, 187
BauI CACGAG 1 cut(s) 287
BlpI GCTNAGC 1 cut(s) 71
Bme18I GGWCC 1 cut(s) 143
BmgT120I GGNCC 1 cut(s) 143
BmsI GCATC 1 cut(s) 126
Bpu1102I GCTNAGC 1 cut(s) 71
BsaJI CCNNGG 1 cut(s) 231
Bse1I ACTGG 1 cut(s) 71
BseDI CCNNGG 1 cut(s) 231
BseGI GGATG 1 cut(s) 117
BseMII CTCAG 1 cut(s) 62
BseNI ACTGG 1 cut(s) 71
BseRI GAGGAG 1 cut(s) 275
Bsh1236I CGCG 1 cut(s) 124
Bsp143I GATC 1 cut(s) 211
Bsp1720I GCTNAGC 1 cut(s) 71
Bsp19I CCATGG 1 cut(s) 231
BspACI CCGC 1 cut(s) 122
BspCNI CTCAG 1 cut(s) 63
BspFNI CGCG 1 cut(s) 124
BspPI GGATC 1 cut(s) 206
BsrI ACTGG 1 cut(s) 71
BssECI CCNNGG 1 cut(s) 231
BssMI GATC 1 cut(s) 211
BssSI CACGAG 1 cut(s) 287
BssT1I CCWWGG 1 cut(s) 231
Bst2BI CACGAG 1 cut(s) 287
Bst6I CTCTTC 2 cut(s) 22, 75
BstDEI CTNAG 1 cut(s) 71
BstDSI CCRYGG 1 cut(s) 231
BstF5I GGATG 1 cut(s) 117
BstFNI CGCG 1 cut(s) 124
BstHHI GCGC 1 cut(s) 126
BstKTI GATC 1 cut(s) 214
BstMBI GATC 1 cut(s) 211
BstMWI GCNNNNNNNGC 2 cut(s) 123, 203
BstUI CGCG 1 cut(s) 124
BtgI CCRYGG 1 cut(s) 231
BtgZI GCGATG 2 cut(s) 90, 280
BtsCI GGATG 1 cut(s) 117
CfoI GCGC 1 cut(s) 126
Cfr13I GGNCC 1 cut(s) 143
CviAII CATG 1 cut(s) 232
CviJI RGCY 4 cut(s) 70, 206, 268, 278
CviKI_1 RGCY 4 cut(s) 70, 206, 268, 278
DdeI CTNAG 1 cut(s) 71
DpnI GATC 1 cut(s) 213
DpnII GATC 1 cut(s) 211
Eam1104I CTCTTC 2 cut(s) 22, 75
EarI CTCTTC 2 cut(s) 22, 75
Eco130I CCWWGG 1 cut(s) 231
Eco47I GGWCC 1 cut(s) 143
Eco57I CTGAAG 1 cut(s) 201
EcoT14I CCWWGG 1 cut(s) 231
ErhI CCWWGG 1 cut(s) 231
FaeI CATG 1 cut(s) 235
FaiI YATR 4 cut(s) 32, 141, 189, 233
FatI CATG 1 cut(s) 231
FauI CCCGC 1 cut(s) 129
FokI GGATG 1 cut(s) 104
GlaI GCGC 1 cut(s) 125
HhaI GCGC 1 cut(s) 126
Hin1II CATG 1 cut(s) 235
Hin6I GCGC 1 cut(s) 124
HinP1I GCGC 1 cut(s) 124
Hpy166II GTNNAC 1 cut(s) 292
Hpy188I TCNGA 1 cut(s) 211
Hpy188III TCNNGA 2 cut(s) 219, 289
Hpy8I GTNNAC 1 cut(s) 292
HpyAV CCTTC 1 cut(s) 225
HpyCH4IV ACGT 1 cut(s) 169
HpyCH4V TGCA 2 cut(s) 90, 153
HpyF10VI GCNNNNNNNGC 2 cut(s) 123, 203
HpyF3I CTNAG 1 cut(s) 71
HpySE526I ACGT 1 cut(s) 169
Hsp92II CATG 1 cut(s) 235
HspAI GCGC 1 cut(s) 124
Kzo9I GATC 1 cut(s) 211
LpnPI CCDG 2 cut(s) 52, 204
LweI GCATC 1 cut(s) 126
MaeII ACGT 1 cut(s) 169
MaeIII GTNAC 2 cut(s) 62, 170
MalI GATC 1 cut(s) 213
MboI GATC 1 cut(s) 211
MboII GAAGA 7 cut(s) 9, 38, 88, 92, 175, 238, 241
MfeI CAATTG 1 cut(s) 270
MluCI AATT 5 cut(s) 35, 91, 181, 260, 270
MnlI CCTC 5 cut(s) 20, 76, 156, 217, 296
MunI CAATTG 1 cut(s) 270
MvnI CGCG 1 cut(s) 124
MwoI GCNNNNNNNGC 2 cut(s) 123, 203
NcoI CCATGG 1 cut(s) 231
NdeII GATC 1 cut(s) 211
NlaIII CATG 1 cut(s) 235
Psp1406I AACGTT 1 cut(s) 169
PspPI GGNCC 1 cut(s) 143
Sau3AI GATC 1 cut(s) 211
Sau96I GGNCC 1 cut(s) 143
SetI ASST 4 cut(s) 12, 64, 108, 172
SfaNI GCATC 1 cut(s) 126
SinI GGWCC 1 cut(s) 143
Sse9I AATT 5 cut(s) 35, 91, 181, 260, 270
SsiI CCGC 1 cut(s) 122
StyI CCWWGG 1 cut(s) 231
TaiI ACGT 1 cut(s) 172
TasI AATT 5 cut(s) 35, 91, 181, 260, 270
TspDTI ATGAA 2 cut(s) 93, 194
VpaK11BI GGWCC 1 cut(s) 143
XapI RAATTY 1 cut(s) 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.