RchiOBHm_Chr4g0390181

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000417
Physical Location & Seq
Reverse (-)
5488348 .. 5488886
539 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36324

Sequence Viewer

Length: 486 bp
ATGGACATTCGATTCAGAGTGGGTGGGTGGTTCAGGAATGGGATTCTAGAGATTCCACAGCTAAACGTTGGAATGTCATCGGAAACATTATTCAGGAACCTTATTGCAATTGAGCAATGCTTCCATGGTTATTCAAACGTGATAACATCTTATGCCATCTTTATGGATAACCTCATCTCTTCAAAGGAAGATATGGAATTACTTTGCAAGAAACAAGTAATTGGTAACTGGATGAGTGATGAAGATGGTTGTGAGTTCTTCAGCAATCTTTACAAGGACATCCCACACAACAAGTTCTACTATTATGGTCTGTGCAAGCAAGTAAATGCTCGTTACAGATCGAGATGGTATACATGGTTGGCTTTACTCAAGAGTGAAAAATTTTCTAACCCCTGGAGAATTTTGGCTTTCGGGATAGGTATTATCGTTTTGATTCTCACCGCGTGGAGTCAGACAAACAACATTCGGGTTAACATGCATAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

161

Amino Acids

18.97

Weight (kDa)

8.9

Isoelectric Point (pI)

51.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 2 - 146 1.9e-41 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000417)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g32770 FvH4_4g02520 FvH4_4g02520 FvH4_4g02530 FvH4_4g02550 FvH4_4g17730 FvH4_4g17730
rosa_chinensis RchiOBHm_Chr1g0318801 RchiOBHm_Chr4g0390011 RchiOBHm_Chr4g0390031 RchiOBHm_Chr4g0390041 RchiOBHm_Chr4g0390061 RchiOBHm_Chr4g0390091 RchiOBHm_Chr4g0390101 RchiOBHm_Chr4g0390141 RchiOBHm_Chr4g0390181 RchiOBHm_Chr4g0390191 RchiOBHm_Chr4g0390201 RchiOBHm_Chr4g0390231 RchiOBHm_Chr4g0390241 RchiOBHm_Chr4g0390251 RchiOBHm_Chr4g0390661 RchiOBHm_Chr4g0390711 RchiOBHm_Chr4g0390741 RchiOBHm_Chr4g0390771 RchiOBHm_Chr4g0390801 RchiOBHm_Chr5g0058271
rosa_laevigata RLG00000008685 RLG00000009910 RLG00000009930 RLG00000009932 RLG00000009933 RLG00000009934 RLG00000009935 RLG00000009937 RLG00000009938 RLG00000009940 RLG00000035208 RLG00000035209
rosa_multiflora Rmu_co8281525.1_g000001 Rmu_co8464925.1_g000001 Rmu_sc0000171.1_g000023 Rmu_sc0000171.1_g000027 Rmu_sc0000367.1_g000061 Rmu_sc0000679.1_g000027 Rmu_sc0001380.1_g000026 Rmu_sc0001380.1_g000030 Rmu_sc0001471.1_g000010 Rmu_sc0003643.1_g000007 Rmu_sc0004336.1_g000002 Rmu_sc0004336.1_g000011 Rmu_sc0004336.1_g000012 Rmu_sc0005003.1_g000007 Rmu_sc0005003.1_g000012 Rmu_sc0005003.1_g000016 Rmu_sc0005003.1_g000022 Rmu_sc0008322.1_g000002 Rmu_sc0011197.1_g000004 Rmu_sc0014620.1_g000006 Rmu_sc0014620.1_g000017 Rmu_sc0018617.1_g000002
rosa_roxburghii Rroxscaffold_1G00022270 Rroxscaffold_5G00336180 Rroxscaffold_5G00336220 Rroxscaffold_5G00336240 Rroxscaffold_5G00336250 Rroxscaffold_5G00336290 Rroxscaffold_5G00336310 Rroxscaffold_5G00336350 Rroxscaffold_5G00336370 Rroxscaffold_5G00336670 Rroxscaffold_5G00336700 Rroxscaffold_5G00336710
rosa_rugosa Rorug01G0020300 Rorug03G0327700 Rorug03G0327800 Rorug03G0328000 Rorug03G0328100 Rorug03G0328300 Rorug03G0328600 Rorug03G0328600 Rorug03G0331700 Rorug03G0331800 Rorug05G0312900
rosa_samantha Rh4DG024700 Rh4DG024900 Rh4DG025000 Rh4DG025200 Rh4DG025500 Rh4DG025900 Rh4DG026200 Rh4DG030200 Rh5DG407000
rosa_wichuraiana Rw4G002360 Rw4G002410 Rw4G002420 Rw4G002450 Rw4G002480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 350
AccII CGCG 1 cut(s) 443
AciI CCGC 1 cut(s) 441
AclI AACGTT 1 cut(s) 66
AcsI RAATTY 2 cut(s) 380, 399
AcuI CTGAAG 1 cut(s) 244
AdeI CACNNNGTG 1 cut(s) 444
AgsI TTSAA 2 cut(s) 135, 183
AjnI CCWGG 1 cut(s) 392
AluBI AGCT 1 cut(s) 61
AluI AGCT 1 cut(s) 61
ApoI RAATTY 2 cut(s) 380, 399
AsuHPI GGTGA 1 cut(s) 430
BccI CCATC 3 cut(s) 164, 239, 339
BciT130I CCWGG 1 cut(s) 394
BfaI CTAG 1 cut(s) 47
Bme1390I CCNGG 1 cut(s) 394
BmiI GGNNCC 1 cut(s) 98
BmrFI CCNGG 1 cut(s) 394
BpmI CTGGAG 1 cut(s) 415
BpuEI CTTGAG 1 cut(s) 353
BsaJI CCNNGG 2 cut(s) 124, 392
Bse1I ACTGG 1 cut(s) 233
Bse3DI GCAATG 1 cut(s) 122
BseBI CCWGG 1 cut(s) 394
BseDI CCNNGG 2 cut(s) 124, 392
BseGI GGATG 2 cut(s) 237, 279
BseMI GCAATG 1 cut(s) 122
BseNI ACTGG 1 cut(s) 233
Bsh1236I CGCG 1 cut(s) 443
Bsp143I GATC 1 cut(s) 338
Bsp19I CCATGG 1 cut(s) 124
BspACI CCGC 1 cut(s) 441
BspFNI CGCG 1 cut(s) 443
BspLI GGNNCC 1 cut(s) 98
BsrDI GCAATG 1 cut(s) 122
BsrI ACTGG 1 cut(s) 233
BssECI CCNNGG 2 cut(s) 124, 392
BssMI GATC 1 cut(s) 338
BssNAI GTATAC 1 cut(s) 351
BssT1I CCWWGG 1 cut(s) 124
Bst1107I GTATAC 1 cut(s) 351
Bst2UI CCWGG 1 cut(s) 394
Bst6I CTCTTC 1 cut(s) 184
BstC8I GCNNGC 1 cut(s) 317
BstDSI CCRYGG 1 cut(s) 124
BstF5I GGATG 2 cut(s) 237, 279
BstFNI CGCG 1 cut(s) 443
BstKTI GATC 1 cut(s) 341
BstMBI GATC 1 cut(s) 338
BstNI CCWGG 1 cut(s) 394
BstNSI RCATGY 1 cut(s) 478
BstSCI CCNGG 1 cut(s) 392
BstUI CGCG 1 cut(s) 443
BstXI CCANNNNNNTGG 1 cut(s) 163
BstZ17I GTATAC 1 cut(s) 351
BtgI CCRYGG 1 cut(s) 124
BtsCI GGATG 2 cut(s) 237, 279
Cac8I GCNNGC 1 cut(s) 317
CviAII CATG 3 cut(s) 125, 354, 475
CviJI RGCY 3 cut(s) 61, 362, 407
CviKI_1 RGCY 3 cut(s) 61, 362, 407
DpnI GATC 1 cut(s) 340
DpnII GATC 1 cut(s) 338
DraIII CACNNNGTG 1 cut(s) 444
Eam1104I CTCTTC 1 cut(s) 184
EarI CTCTTC 1 cut(s) 184
Eco130I CCWWGG 1 cut(s) 124
Eco57I CTGAAG 1 cut(s) 244
EcoRII CCWGG 1 cut(s) 392
EcoT14I CCWWGG 1 cut(s) 124
EcoT22I ATGCAT 1 cut(s) 480
ErhI CCWWGG 1 cut(s) 124
FaeI CATG 3 cut(s) 128, 357, 478
FaiI YATR 9 cut(s) 126, 153, 164, 194, 306, 351, 355, 476, 480
FatI CATG 3 cut(s) 124, 353, 474
FblI GTMKAC 1 cut(s) 350
FokI GGATG 2 cut(s) 244, 266
FspBI CTAG 1 cut(s) 47
GsuI CTGGAG 1 cut(s) 415
Hin1II CATG 3 cut(s) 128, 357, 478
HincII GTYRAC 1 cut(s) 472
HindII GTYRAC 1 cut(s) 472
HinfI GANTC 5 cut(s) 12, 43, 52, 433, 448
HpaI GTTAAC 1 cut(s) 472
HphI GGTGA 1 cut(s) 430
Hpy166II GTNNAC 2 cut(s) 351, 472
Hpy188I TCNGA 3 cut(s) 17, 82, 453
Hpy188III TCNNGA 6 cut(s) 34, 47, 94, 342, 370, 412
Hpy8I GTNNAC 2 cut(s) 351, 472
HpyCH4IV ACGT 2 cut(s) 66, 138
HpyCH4V TGCA 4 cut(s) 107, 207, 315, 478
HpySE526I ACGT 2 cut(s) 66, 138
Hsp92II CATG 3 cut(s) 128, 357, 478
KspAI GTTAAC 1 cut(s) 472
Kzo9I GATC 1 cut(s) 338
LpnPI CCDG 5 cut(s) 19, 79, 214, 379, 406
MaeI CTAG 1 cut(s) 47
MaeII ACGT 2 cut(s) 66, 138
MaeIII GTNAC 2 cut(s) 224, 332
MalI GATC 1 cut(s) 340
MboI GATC 1 cut(s) 338
MboII GAAGA 4 cut(s) 171, 200, 250, 254
MfeI CAATTG 1 cut(s) 108
MluCI AATT 5 cut(s) 108, 197, 219, 380, 399
MlyI GAGTC 1 cut(s) 457
MmeI TCCRAC 1 cut(s) 49
MnlI CCTC 1 cut(s) 182
Mph1103I ATGCAT 1 cut(s) 480
MseI TTAA 1 cut(s) 471
MslI CAYNNNNRTG 1 cut(s) 161
MspR9I CCNGG 1 cut(s) 394
MunI CAATTG 1 cut(s) 108
MvaI CCWGG 1 cut(s) 394
MvnI CGCG 1 cut(s) 443
NcoI CCATGG 1 cut(s) 124
NdeII GATC 1 cut(s) 338
NlaIII CATG 3 cut(s) 128, 357, 478
NlaIV GGNNCC 1 cut(s) 98
NsiI ATGCAT 1 cut(s) 480
NspI RCATGY 1 cut(s) 478
PfeI GAWTC 4 cut(s) 12, 43, 52, 433
PleI GAGTC 1 cut(s) 456
PpsI GAGTC 1 cut(s) 456
Psp1406I AACGTT 1 cut(s) 66
Psp6I CCWGG 1 cut(s) 392
PspGI CCWGG 1 cut(s) 392
PspN4I GGNNCC 1 cut(s) 98
RseI CAYNNNNRTG 1 cut(s) 161
SaqAI TTAA 1 cut(s) 471
Sau3AI GATC 1 cut(s) 338
SchI GAGTC 1 cut(s) 457
ScrFI CCNGG 1 cut(s) 394
SetI ASST 6 cut(s) 63, 69, 102, 141, 174, 421
SmiMI CAYNNNNRTG 1 cut(s) 161
SmlI CTYRAG 1 cut(s) 368
SmoI CTYRAG 1 cut(s) 368
Sse9I AATT 5 cut(s) 108, 197, 219, 380, 399
SsiI CCGC 1 cut(s) 441
SspMI CTAG 1 cut(s) 47
StyD4I CCNGG 1 cut(s) 392
StyI CCWWGG 1 cut(s) 124
TaiI ACGT 2 cut(s) 69, 141
TaqI TCGA 2 cut(s) 10, 341
TasI AATT 5 cut(s) 108, 197, 219, 380, 399
TfiI GAWTC 4 cut(s) 12, 43, 52, 433
Tru1I TTAA 1 cut(s) 471
Tru9I TTAA 1 cut(s) 471
TspDTI ATGAA 1 cut(s) 255
XapI RAATTY 2 cut(s) 380, 399
XbaI TCTAGA 1 cut(s) 46
XceI RCATGY 1 cut(s) 478
XmiI GTMKAC 1 cut(s) 350
XspI CTAG 1 cut(s) 47
Zsp2I ATGCAT 1 cut(s) 480
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.