Rh4DG025200

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0000417
Physical Location & Seq
Reverse (-)
4643420 .. 4645656
2237 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG025200.1

Sequence Viewer

Length: 1476 bp
ATGTCTGCAAATTATAAGAGTGCTAAAGATCATACAGTTATCGATATTGGCAAGAAATGCAAGAAAAGCATCTTCAGAGTTCCTAACGTGCTCCGGAGACAAAACCCAGAAGCATATACACCTGAGGTTGTTTCAATGGGACCTTTTCATCATTACCGAGAAAAGCAAGGCAAGGGAGGCAACGAAGGCAAAGGCGAGGAAGATTTCCAACTGACGGAACGAGTGAAGAAGAGCTATTTGAATGAAATTCTCACAGGTATGAAGATTACTTTGGAAGAGTTGACCGCAAAAGTTACTGAGCTCTCAGATCAGAAAAATGAAGGTGGCTTTGAGGAACGAGCCCGCAATTTTTATGCAGAACCACTTGATCATATTTCTTCCAAAGACTTCATAGAGATGATGATAGTTGACGGTTGCTTCCTAATTCAACTGTTTCGGAAGTGTGATGATCCGAAACATAGGGCCTTTGATGACCCGGTGTTCAACATGGATTGTATGTTTCATTTCCTATGCCATGACATTTTGCTCCTAGAGAATCAACTACCTTGGTTTGTTATCCACAGTTTGTATGGCCTTACCCTTGATATATACTCTGGTGAAGCTTCCGGTGATGTGTACTCTGGTGAAGCTTCCCTCTCTATTATAATCCTGAAAGCGCTTAGCATACTACCATCACTGAAGCATAGTTGCTCAACCTATAAAACGCATCTCCATGAAAACGAGTGTCATTGTGATGCTGATGTTCTGCACATACTTGATCTGGTAAGAGCTTCCATAGTTATTCCATTAACTAACATAAAAGAGACAGGGCATAAAGCAGCTGGTAAAGAAGGTACATCCAACCCTCAAGAACATCAAGTGCACACTAGGAACAAAGACAAGAGAGACAATAAAGCTGTTCATGAAGACCCAGATCAACATCAAATTCGTACCGCAACCGCTCTCTCAAAGGCAAACATTAAATTCAAAAGCATCGAAAAGGATAGCATAATGGGCATCCAATTCAAAGAGGATGGGTGGTTCAGGAATGGGATTCTTGAGATTCCACAGCTAAACGTTGGAATGTCATCGGAAACATTATTCAGGAACCTTATTGCAATTGAGCAATGCTACCATGGTTATTCAAACGAGATAACATCTTATGCCATCTTTATGGATAACCTCATATCTTCAAAGGAAGATATGGAATTACTTTGCAAGGAAAAAGTAATTGGTAACTGGATGAGTGATGAAGATGGTTGTAAGTTCTTCAGCAACCTTTACAAGGACATCCCGCACAATAAGTTCTACTATGTTGAGCTGTGCGAAAAAGTGAATGATCGTTACAGGTCGAGATGGCATACATGGTTGGCTTTACTCAAGAGTGAAAAATTTTCTAATCCCTGGAGAATTTTAGCTTTCGGGATAGGTATCTTCATTTTGATTCTCACTGCGTGCAGTCAGACACTCAACATTCGGGTTAACATGCATAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

491

Amino Acids

56.46

Weight (kDa)

6.35

Isoelectric Point (pI)

46.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 24 - 476 8e-101 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000417)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g32770 FvH4_4g02520 FvH4_4g02520 FvH4_4g02530 FvH4_4g02550 FvH4_4g17730 FvH4_4g17730
rosa_chinensis RchiOBHm_Chr1g0318801 RchiOBHm_Chr4g0390011 RchiOBHm_Chr4g0390031 RchiOBHm_Chr4g0390041 RchiOBHm_Chr4g0390061 RchiOBHm_Chr4g0390091 RchiOBHm_Chr4g0390101 RchiOBHm_Chr4g0390141 RchiOBHm_Chr4g0390181 RchiOBHm_Chr4g0390191 RchiOBHm_Chr4g0390201 RchiOBHm_Chr4g0390231 RchiOBHm_Chr4g0390241 RchiOBHm_Chr4g0390251 RchiOBHm_Chr4g0390661 RchiOBHm_Chr4g0390711 RchiOBHm_Chr4g0390741 RchiOBHm_Chr4g0390771 RchiOBHm_Chr4g0390801 RchiOBHm_Chr5g0058271
rosa_laevigata RLG00000008685 RLG00000009910 RLG00000009930 RLG00000009932 RLG00000009933 RLG00000009934 RLG00000009935 RLG00000009937 RLG00000009938 RLG00000009940 RLG00000035208 RLG00000035209
rosa_multiflora Rmu_co8281525.1_g000001 Rmu_co8464925.1_g000001 Rmu_sc0000171.1_g000023 Rmu_sc0000171.1_g000027 Rmu_sc0000367.1_g000061 Rmu_sc0000679.1_g000027 Rmu_sc0001380.1_g000026 Rmu_sc0001380.1_g000030 Rmu_sc0001471.1_g000010 Rmu_sc0003643.1_g000007 Rmu_sc0004336.1_g000002 Rmu_sc0004336.1_g000011 Rmu_sc0004336.1_g000012 Rmu_sc0005003.1_g000007 Rmu_sc0005003.1_g000012 Rmu_sc0005003.1_g000016 Rmu_sc0005003.1_g000022 Rmu_sc0008322.1_g000002 Rmu_sc0011197.1_g000004 Rmu_sc0014620.1_g000006 Rmu_sc0014620.1_g000017 Rmu_sc0018617.1_g000002
rosa_roxburghii Rroxscaffold_1G00022270 Rroxscaffold_5G00336180 Rroxscaffold_5G00336220 Rroxscaffold_5G00336240 Rroxscaffold_5G00336250 Rroxscaffold_5G00336290 Rroxscaffold_5G00336310 Rroxscaffold_5G00336350 Rroxscaffold_5G00336370 Rroxscaffold_5G00336670 Rroxscaffold_5G00336700 Rroxscaffold_5G00336710
rosa_rugosa Rorug01G0020300 Rorug03G0327700 Rorug03G0327800 Rorug03G0328000 Rorug03G0328100 Rorug03G0328300 Rorug03G0328600 Rorug03G0328600 Rorug03G0331700 Rorug03G0331800 Rorug05G0312900
rosa_samantha Rh4DG024700 Rh4DG024900 Rh4DG025000 Rh4DG025200 Rh4DG025500 Rh4DG025900 Rh4DG026200 Rh4DG030200 Rh5DG407000
rosa_wichuraiana Rw4G002360 Rw4G002410 Rw4G002420 Rw4G002450 Rw4G002480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 15, 644
AccBSI CCGCTC 1 cut(s) 941
AccIII TCCGGA 1 cut(s) 93
AciI CCGC 5 cut(s) 285, 343, 933, 939, 1274
AclI AACGTT 1 cut(s) 1056
AclWI GGATC 1 cut(s) 443
AcsI RAATTY 5 cut(s) 246, 924, 962, 1370, 1389
AcuI CTGAAG 3 cut(s) 58, 698, 1234
AdeI CACNNNGTG 1 cut(s) 1434
AfaI GTAC 3 cut(s) 617, 835, 931
AfeI AGCGCT 1 cut(s) 657
AfiI CCNNNNNNNGG 2 cut(s) 214, 1264
AgsI TTSAA 8 cut(s) 135, 241, 428, 484, 967, 1006, 1125, 1173
AjnI CCWGG 1 cut(s) 1382
AjuI GAANNNNNNNTTGG 4 cut(s) 254, 286, 1194, 1226
AloI GAACNNNNNNTCC 2 cut(s) 1004, 1036
Alw21I GWGCWC 3 cut(s) 93, 303, 864
Alw26I GTCTC 3 cut(s) 91, 797, 879
Alw44I GTGCAC 1 cut(s) 860
AlwI GGATC 1 cut(s) 443
Aor13HI TCCGGA 1 cut(s) 93
Aor51HI AGCGCT 1 cut(s) 657
AoxI GGCC 2 cut(s) 462, 571
ApaLI GTGCAC 1 cut(s) 860
ApeKI GCWGC 1 cut(s) 818
ApoI RAATTY 5 cut(s) 246, 924, 962, 1370, 1389
AspLEI GCGC 1 cut(s) 658
AspS9I GGNCC 2 cut(s) 140, 462
AsuC2I CCSGG 1 cut(s) 476
AsuHPI GGTGA 3 cut(s) 608, 620, 635
AvaII GGWCC 1 cut(s) 140
AxyI CCTNAGG 1 cut(s) 123
BaeGI GKGCMC 1 cut(s) 864
BanII GRGCYC 2 cut(s) 303, 343
BbsI GAAGAC 1 cut(s) 912
Bbv12I GWGCWC 3 cut(s) 93, 303, 864
BbvI GCAGC 1 cut(s) 830
BccI CCATC 5 cut(s) 679, 1007, 1154, 1229, 1329
BciT130I CCWGG 1 cut(s) 1384
BclI TGATCA 1 cut(s) 367
BcnI CCSGG 1 cut(s) 476
BcoDI GTCTC 3 cut(s) 91, 797, 879
BfaI CTAG 2 cut(s) 530, 867
BfoI RGCGCY 1 cut(s) 659
BisI GCNGC 1 cut(s) 819
BlpI GCTNAGC 1 cut(s) 659
BlsI GCNGC 1 cut(s) 820
Bme1390I CCNGG 2 cut(s) 476, 1384
Bme18I GGWCC 1 cut(s) 140
BmgT120I GGNCC 2 cut(s) 140, 462
BmiI GGNNCC 2 cut(s) 141, 1088
BmrFI CCNGG 2 cut(s) 476, 1384
BmsI GCATC 5 cut(s) 78, 715, 724, 981, 1005
BpiI GAAGAC 1 cut(s) 912
BpmI CTGGAG 1 cut(s) 1405
Bpu1102I GCTNAGC 1 cut(s) 659
BpuEI CTTGAG 3 cut(s) 831, 1058, 1343
BpuMI CCSGG 1 cut(s) 476
Bsa29I ATCGAT 1 cut(s) 42
BsaBI GATNNNNATC 2 cut(s) 918, 1409
BsaJI CCNNGG 3 cut(s) 545, 1114, 1382
BsaWI WCCGGW 2 cut(s) 93, 605
Bsc4I CCNNNNNNNGG 2 cut(s) 214, 1264
Bse1I ACTGG 1 cut(s) 1223
Bse21I CCTNAGG 1 cut(s) 123
Bse3DI GCAATG 1 cut(s) 1112
Bse8I GATNNNNATC 2 cut(s) 918, 1409
BseAI TCCGGA 1 cut(s) 93
BseBI CCWGG 1 cut(s) 1384
BseCI ATCGAT 1 cut(s) 42
BseDI CCNNGG 3 cut(s) 545, 1114, 1382
BseGI GGATG 5 cut(s) 836, 996, 1018, 1227, 1269
BseJI GATNNNNATC 2 cut(s) 918, 1409
BseLI CCNNNNNNNGG 2 cut(s) 214, 1264
BseMI GCAATG 1 cut(s) 1112
BseMII CTCAG 3 cut(s) 114, 288, 318
BseNI ACTGG 1 cut(s) 1223
BseSI GKGCMC 1 cut(s) 864
BseXI GCAGC 1 cut(s) 830
BsgI GTGCAG 2 cut(s) 731, 1456
BshFI GGCC 2 cut(s) 464, 573
BshVI ATCGAT 1 cut(s) 42
BsiHKAI GWGCWC 3 cut(s) 93, 303, 864
BsiSI CCGG 3 cut(s) 94, 476, 606
BslFI GGGAC 1 cut(s) 153
BslI CCNNNNNNNGG 2 cut(s) 214, 1264
BsmAI GTCTC 3 cut(s) 91, 797, 879
BsmFI GGGAC 1 cut(s) 153
BsnI GGCC 2 cut(s) 464, 573
Bsp1286I GDGCHC 4 cut(s) 93, 303, 343, 864
Bsp13I TCCGGA 1 cut(s) 93
Bsp143I GATC 7 cut(s) 28, 307, 367, 448, 757, 913, 1318
Bsp1720I GCTNAGC 1 cut(s) 659
Bsp19I CCATGG 1 cut(s) 1114
BspACI CCGC 5 cut(s) 285, 343, 933, 939, 1274
BspANI GGCC 2 cut(s) 464, 573
BspCNI CTCAG 3 cut(s) 115, 289, 317
BspDI ATCGAT 1 cut(s) 42
BspEI TCCGGA 1 cut(s) 93
BspHI TCATGA 1 cut(s) 901
BspLI GGNNCC 2 cut(s) 141, 1088
BspPI GGATC 1 cut(s) 443
BspQI GCTCTTC 1 cut(s) 224
BsrBI CCGCTC 1 cut(s) 941
BsrDI GCAATG 1 cut(s) 1112
BsrI ACTGG 1 cut(s) 1223
BssECI CCNNGG 3 cut(s) 545, 1114, 1382
BssMI GATC 7 cut(s) 28, 307, 367, 448, 757, 913, 1318
BssT1I CCWWGG 2 cut(s) 545, 1114
Bst2UI CCWGG 1 cut(s) 1384
Bst4CI ACNGT 4 cut(s) 37, 413, 432, 563
Bst6I CTCTTC 2 cut(s) 224, 270
BstAPI GCANNNNNTGC 1 cut(s) 57
BstC8I GCNNGC 2 cut(s) 343, 1435
BstDEI CTNAG 4 cut(s) 123, 297, 304, 659
BstDSI CCRYGG 1 cut(s) 1114
BstENI CCTNNNNNAGG 1 cut(s) 1262
BstF5I GGATG 5 cut(s) 836, 996, 1018, 1227, 1269
BstH2I RGCGCY 1 cut(s) 659
BstHHI GCGC 1 cut(s) 658
BstKTI GATC 7 cut(s) 31, 310, 370, 451, 760, 916, 1321
BstMAI GTCTC 3 cut(s) 91, 797, 879
BstMBI GATC 7 cut(s) 28, 307, 367, 448, 757, 913, 1318
BstMWI GCNNNNNNNGC 5 cut(s) 57, 66, 177, 186, 993
BstNI CCWGG 1 cut(s) 1384
BstNSI RCATGY 1 cut(s) 1468
BstSCI CCNGG 2 cut(s) 474, 1382
BstSLI GKGCMC 1 cut(s) 864
BstV1I GCAGC 1 cut(s) 830
BstV2I GAAGAC 1 cut(s) 912
BstXI CCANNNNNNTGG 1 cut(s) 1153
Bsu15I ATCGAT 1 cut(s) 42
Bsu36I CCTNAGG 1 cut(s) 123
BsuRI GGCC 2 cut(s) 464, 573
BsuTUI ATCGAT 1 cut(s) 42
BtgI CCRYGG 1 cut(s) 1114
BtsCI GGATG 5 cut(s) 836, 996, 1018, 1227, 1269
BtsI GCAGTG 1 cut(s) 1428
BtsIMutI CAGTG 2 cut(s) 674, 1428
Cac8I GCNNGC 2 cut(s) 343, 1435
CciI TCATGA 1 cut(s) 901
CfoI GCGC 1 cut(s) 658
Cfr13I GGNCC 2 cut(s) 140, 462
ClaI ATCGAT 1 cut(s) 42
Csp6I GTAC 3 cut(s) 616, 834, 930
CviAII CATG 7 cut(s) 487, 515, 713, 902, 1115, 1344, 1465
CviQI GTAC 3 cut(s) 616, 834, 930
DdeI CTNAG 4 cut(s) 123, 297, 304, 659
DpnI GATC 7 cut(s) 30, 309, 369, 450, 759, 915, 1320
DpnII GATC 7 cut(s) 28, 307, 367, 448, 757, 913, 1318
DraIII CACNNNGTG 1 cut(s) 1434
Eam1104I CTCTTC 2 cut(s) 224, 270
EarI CTCTTC 2 cut(s) 224, 270
Ecl136II GAGCTC 1 cut(s) 301
Eco130I CCWWGG 2 cut(s) 545, 1114
Eco24I GRGCYC 2 cut(s) 303, 343
Eco47I GGWCC 1 cut(s) 140
Eco47III AGCGCT 1 cut(s) 657
Eco53kI GAGCTC 1 cut(s) 301
Eco57I CTGAAG 3 cut(s) 58, 698, 1234
Eco81I CCTNAGG 1 cut(s) 123
EcoICRI GAGCTC 1 cut(s) 301
EcoNI CCTNNNNNAGG 1 cut(s) 1262
EcoO109I RGGNCCY 2 cut(s) 140, 462
EcoRII CCWGG 1 cut(s) 1382
EcoT14I CCWWGG 2 cut(s) 545, 1114
EcoT22I ATGCAT 1 cut(s) 1470
EcoT38I GRGCYC 2 cut(s) 303, 343
ErhI CCWWGG 2 cut(s) 545, 1114
FaeI CATG 7 cut(s) 490, 518, 716, 905, 1118, 1347, 1468
FaqI GGGAC 1 cut(s) 153
FatI CATG 7 cut(s) 486, 514, 712, 901, 1114, 1343, 1464
FauI CCCGC 2 cut(s) 350, 1281
FbaI TGATCA 1 cut(s) 367
Fnu4HI GCNGC 1 cut(s) 819
FokI GGATG 5 cut(s) 823, 983, 1025, 1234, 1256
FriOI GRGCYC 2 cut(s) 303, 343
Fsp4HI GCNGC 1 cut(s) 819
FspBI CTAG 2 cut(s) 530, 867
GlaI GCGC 1 cut(s) 657
GluI GCNGC 1 cut(s) 819
GsuI CTGGAG 1 cut(s) 1405
HaeII RGCGCY 1 cut(s) 659
HaeIII GGCC 2 cut(s) 464, 573
HapII CCGG 3 cut(s) 94, 476, 606
HhaI GCGC 1 cut(s) 658
Hin1II CATG 7 cut(s) 490, 518, 716, 905, 1118, 1347, 1468
Hin6I GCGC 1 cut(s) 656
HinP1I GCGC 1 cut(s) 656
HincII GTYRAC 3 cut(s) 282, 409, 1462
HindII GTYRAC 3 cut(s) 282, 409, 1462
HindIII AAGCTT 2 cut(s) 600, 627
HinfI GANTC 4 cut(s) 535, 1033, 1042, 1423
HpaI GTTAAC 1 cut(s) 1462
HpaII CCGG 3 cut(s) 94, 476, 606
HphI GGTGA 3 cut(s) 608, 620, 635
Hpy166II GTNNAC 5 cut(s) 282, 409, 616, 862, 1462
Hpy188I TCNGA 7 cut(s) 77, 307, 312, 438, 453, 1072, 1443
Hpy8I GTNNAC 5 cut(s) 282, 409, 616, 862, 1462
HpyAV CCTTC 3 cut(s) 179, 314, 824
HpyCH4III ACNGT 4 cut(s) 37, 413, 432, 563
HpyCH4IV ACGT 2 cut(s) 87, 1056
HpyCH4V TGCA 9 cut(s) 8, 60, 356, 748, 862, 1097, 1197, 1437, 1468
HpyF10VI GCNNNNNNNGC 5 cut(s) 57, 66, 177, 186, 993
HpyF3I CTNAG 4 cut(s) 123, 297, 304, 659
HpySE526I ACGT 2 cut(s) 87, 1056
Hsp92II CATG 7 cut(s) 490, 518, 716, 905, 1118, 1347, 1468
HspAI GCGC 1 cut(s) 656
Kpn2I TCCGGA 1 cut(s) 93
Ksp22I TGATCA 1 cut(s) 367
KspAI GTTAAC 1 cut(s) 1462
Kzo9I GATC 7 cut(s) 28, 307, 367, 448, 757, 913, 1318
LguI GCTCTTC 1 cut(s) 224
LmnI GCTCC 2 cut(s) 96, 531
Lsp1109I GCAGC 1 cut(s) 830
LweI GCATC 5 cut(s) 78, 715, 724, 981, 1005
MaeI CTAG 2 cut(s) 530, 867
MaeII ACGT 2 cut(s) 87, 1056
MaeIII GTNAC 3 cut(s) 292, 1214, 1322
MalI GATC 7 cut(s) 30, 309, 369, 450, 759, 915, 1320
MbiI CCGCTC 1 cut(s) 941
MboI GATC 7 cut(s) 28, 307, 367, 448, 757, 913, 1318
MfeI CAATTG 1 cut(s) 1098
MhlI GDGCHC 4 cut(s) 93, 303, 343, 864
MmeI TCCRAC 3 cut(s) 232, 864, 1039
MnlI CCTC 8 cut(s) 118, 170, 190, 325, 644, 855, 1003, 1172
Mph1103I ATGCAT 1 cut(s) 1470
MroI TCCGGA 1 cut(s) 93
MseI TTAA 3 cut(s) 788, 960, 1461
MslI CAYNNNNRTG 5 cut(s) 257, 395, 711, 732, 1151
MspA1I CMGCKG 1 cut(s) 821
MspI CCGG 3 cut(s) 94, 476, 606
MspR9I CCNGG 2 cut(s) 476, 1384
MunI CAATTG 1 cut(s) 1098
MvaI CCWGG 1 cut(s) 1384
MwoI GCNNNNNNNGC 5 cut(s) 57, 66, 177, 186, 993
NciI CCSGG 1 cut(s) 476
NcoI CCATGG 1 cut(s) 1114
NdeII GATC 7 cut(s) 28, 307, 367, 448, 757, 913, 1318
NlaIII CATG 7 cut(s) 490, 518, 716, 905, 1118, 1347, 1468
NlaIV GGNNCC 2 cut(s) 141, 1088
NsiI ATGCAT 1 cut(s) 1470
NspI RCATGY 1 cut(s) 1468
PagI TCATGA 1 cut(s) 901
PciSI GCTCTTC 1 cut(s) 224
PfeI GAWTC 4 cut(s) 535, 1033, 1042, 1423
PkrI GCNGC 1 cut(s) 820
PpuMI RGGWCCY 1 cut(s) 140
PsiI TTATAA 2 cut(s) 15, 644
Psp124BI GAGCTC 1 cut(s) 303
Psp1406I AACGTT 1 cut(s) 1056
Psp5II RGGWCCY 1 cut(s) 140
Psp6I CCWGG 1 cut(s) 1382
PspGI CCWGG 1 cut(s) 1382
PspN4I GGNNCC 2 cut(s) 141, 1088
PspPI GGNCC 2 cut(s) 140, 462
PspPPI RGGWCCY 1 cut(s) 140
PvuII CAGCTG 1 cut(s) 821
RsaI GTAC 3 cut(s) 617, 835, 931
RsaNI GTAC 3 cut(s) 616, 834, 930
RseI CAYNNNNRTG 5 cut(s) 257, 395, 711, 732, 1151
SacI GAGCTC 1 cut(s) 303
SapI GCTCTTC 1 cut(s) 224
SaqAI TTAA 3 cut(s) 788, 960, 1461
SatI GCNGC 1 cut(s) 819
Sau3AI GATC 7 cut(s) 28, 307, 367, 448, 757, 913, 1318
Sau96I GGNCC 2 cut(s) 140, 462
ScrFI CCNGG 2 cut(s) 476, 1384
SduI GDGCHC 4 cut(s) 93, 303, 343, 864
SfaNI GCATC 5 cut(s) 78, 715, 724, 981, 1005
SinI GGWCC 1 cut(s) 140
SmiMI CAYNNNNRTG 5 cut(s) 257, 395, 711, 732, 1151
SmlI CTYRAG 3 cut(s) 846, 1037, 1358
SmoI CTYRAG 3 cut(s) 846, 1037, 1358
SsiI CCGC 5 cut(s) 285, 343, 933, 939, 1274
SspMI CTAG 2 cut(s) 530, 867
SstI GAGCTC 1 cut(s) 303
StyD4I CCNGG 2 cut(s) 474, 1382
StyI CCWWGG 2 cut(s) 545, 1114
TaaI ACNGT 4 cut(s) 37, 413, 432, 563
TaiI ACGT 2 cut(s) 90, 1059
TaqI TCGA 3 cut(s) 42, 975, 1331
TatI WGTACW 1 cut(s) 615
TfiI GAWTC 4 cut(s) 535, 1033, 1042, 1423
Tru1I TTAA 3 cut(s) 788, 960, 1461
Tru9I TTAA 3 cut(s) 788, 960, 1461
TscAI CASTG 2 cut(s) 681, 1435
TseI GCWGC 1 cut(s) 818
TspGWI ACGGA 1 cut(s) 230
TspRI CASTG 2 cut(s) 681, 1435
VneI GTGCAC 1 cut(s) 860
VpaK11BI GGWCC 1 cut(s) 140
XagI CCTNNNNNAGG 1 cut(s) 1262
XapI RAATTY 5 cut(s) 246, 924, 962, 1370, 1389
XceI RCATGY 1 cut(s) 1468
XcmI CCANNNNNNNNNTGG 1 cut(s) 566
XspI CTAG 2 cut(s) 530, 867
Zsp2I ATGCAT 1 cut(s) 1470
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.