RLG00000009930

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000417
Physical Location & Seq
Forward (+)
60435937 .. 60441316
5380 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009930

Sequence Viewer

Length: 1092 bp
ATGGAACGAGTGAAAAAGACGTACTTGGATGAAATTCTCAGAGGCATGAATGTAAATTTGAAAGAGCTGATGGCGAAAGTTATTGAGCATTCAGATCAAAAAAATGAAGACACTTTTGTGAAAAGCGCCCGTGATTTTTATGCGGAACCACTTGATCATATTTCCTCCAAAGACTTCATGGAGATGATGATACGTGATGGTTGCTTCCTGATTCAACTATTTCGGAAGTTATTCAACATGGATTGCATGTTTCATTTCCTATGCCATGACCTTTTGCTCCTAGAAAATCAACTACCTTGGTTTGTTCTGGAGAGTTTATATAACCTTATCCTTGGAAATTGCCAAGGTCATCACTCCTCCCTCTCTATTCTCATTCTTGATGCCTTCACCAAATTACCATCACTGAAGCATAGTTGCAAATCCTATAAAGACCATCTTCTCAAGGACCAACTTCATAGACACAATTGTCATGGTGATGCTGATGTTCTGCACATACTCGATCTGATAAGATCTTCTATAGTTGTTCCAATGGAGATCATGTTGGAAAATTTAATATTAATACATCAGATGCATACTGCGACTGCACTTTTAAAGGCAGGCATTAGATTCAGCAAAGTGGAAAGAGAAAGCATAATGGACATAGGATTTGAAGAGGGTCGGGTTCTCACCAATGGAGTTTTCAATGGAGTACTTACTATTCCGCAGCTAAACGTTGGAATGTTGTCTGAATCATTATTCAGGAACCTTATTGCTATTGAGCAATGCTACACTGGTTATCTCATCTCTTCCAAAGAAGATATGGAATTACTCTGCAAGGCGAAAGTAATAGGTAACTGGCTGAGTGATGAAGCTGGTTGCAAGTTCTTCAACAACCTTTACAAGGGTATCCCGCACAACAAGTTTTACTATGTTGATCTCTGCGAGAAATTGAACAGTGGTTATAGAATTAGAGGGTATACATGGGTGGCTTCATTCAAGACTGAAAAGTTCTCTAACCCATGGACAGTTACTGCTTTCTTCATAGGTATTCTCCTTCTGGCTCTCAGCCTGTGGACCACCACAAATACCATTCGGAGCTTCATGCAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

364

Amino Acids

42.01

Weight (kDa)

6.73

Isoelectric Point (pI)

30.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 1 - 348 4.4e-66 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000417)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g32770 FvH4_4g02520 FvH4_4g02520 FvH4_4g02530 FvH4_4g02550 FvH4_4g17730 FvH4_4g17730
rosa_chinensis RchiOBHm_Chr1g0318801 RchiOBHm_Chr4g0390011 RchiOBHm_Chr4g0390031 RchiOBHm_Chr4g0390041 RchiOBHm_Chr4g0390061 RchiOBHm_Chr4g0390091 RchiOBHm_Chr4g0390101 RchiOBHm_Chr4g0390141 RchiOBHm_Chr4g0390181 RchiOBHm_Chr4g0390191 RchiOBHm_Chr4g0390201 RchiOBHm_Chr4g0390231 RchiOBHm_Chr4g0390241 RchiOBHm_Chr4g0390251 RchiOBHm_Chr4g0390661 RchiOBHm_Chr4g0390711 RchiOBHm_Chr4g0390741 RchiOBHm_Chr4g0390771 RchiOBHm_Chr4g0390801 RchiOBHm_Chr5g0058271
rosa_laevigata RLG00000008685 RLG00000009910 RLG00000009930 RLG00000009932 RLG00000009933 RLG00000009934 RLG00000009935 RLG00000009937 RLG00000009938 RLG00000009940 RLG00000035208 RLG00000035209
rosa_multiflora Rmu_co8281525.1_g000001 Rmu_co8464925.1_g000001 Rmu_sc0000171.1_g000023 Rmu_sc0000171.1_g000027 Rmu_sc0000367.1_g000061 Rmu_sc0000679.1_g000027 Rmu_sc0001380.1_g000026 Rmu_sc0001380.1_g000030 Rmu_sc0001471.1_g000010 Rmu_sc0003643.1_g000007 Rmu_sc0004336.1_g000002 Rmu_sc0004336.1_g000011 Rmu_sc0004336.1_g000012 Rmu_sc0005003.1_g000007 Rmu_sc0005003.1_g000012 Rmu_sc0005003.1_g000016 Rmu_sc0005003.1_g000022 Rmu_sc0008322.1_g000002 Rmu_sc0011197.1_g000004 Rmu_sc0014620.1_g000006 Rmu_sc0014620.1_g000017 Rmu_sc0018617.1_g000002
rosa_roxburghii Rroxscaffold_1G00022270 Rroxscaffold_5G00336180 Rroxscaffold_5G00336220 Rroxscaffold_5G00336240 Rroxscaffold_5G00336250 Rroxscaffold_5G00336290 Rroxscaffold_5G00336310 Rroxscaffold_5G00336350 Rroxscaffold_5G00336370 Rroxscaffold_5G00336670 Rroxscaffold_5G00336700 Rroxscaffold_5G00336710
rosa_rugosa Rorug01G0020300 Rorug03G0327700 Rorug03G0327800 Rorug03G0328000 Rorug03G0328100 Rorug03G0328300 Rorug03G0328600 Rorug03G0328600 Rorug03G0331700 Rorug03G0331800 Rorug05G0312900
rosa_samantha Rh4DG024700 Rh4DG024900 Rh4DG025000 Rh4DG025200 Rh4DG025500 Rh4DG025900 Rh4DG026200 Rh4DG030200 Rh5DG407000
rosa_wichuraiana Rw4G002360 Rw4G002410 Rw4G002420 Rw4G002450 Rw4G002480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 465
AccI GTMKAC 1 cut(s) 956
AciI CCGC 3 cut(s) 143, 701, 890
AclI AACGTT 1 cut(s) 711
AcsI RAATTY 3 cut(s) 33, 55, 547
AcuI CTGAAG 1 cut(s) 425
AfaI GTAC 2 cut(s) 23, 690
AfiI CCNNNNNNNGG 1 cut(s) 880
AgsI TTSAA 8 cut(s) 61, 215, 235, 650, 682, 868, 931, 976
AjuI GAANNNNNNNTTGG 2 cut(s) 662, 694
AleI CACNNNNGTG 1 cut(s) 116
AluBI AGCT 4 cut(s) 67, 706, 851, 1077
AluI AGCT 4 cut(s) 67, 706, 851, 1077
AlwNI CAGNNNCTG 1 cut(s) 1010
ApeKI GCWGC 1 cut(s) 703
ApoI RAATTY 3 cut(s) 33, 55, 547
ArsI GACNNNNNNTTYG 2 cut(s) 629, 661
AseI ATTAAT 1 cut(s) 557
Asp700I GAANNNNTTC 1 cut(s) 230
AspLEI GCGC 1 cut(s) 128
AspS9I GGNCC 2 cut(s) 445, 1053
AsuHPI GGTGA 3 cut(s) 379, 485, 658
AvaII GGWCC 2 cut(s) 445, 1053
BaeI ACNNNNGTAYC 2 cut(s) 868, 901
BbsI GAAGAC 1 cut(s) 114
BbvI GCAGC 1 cut(s) 715
BccI CCATC 4 cut(s) 64, 191, 406, 441
BciVI GTATCC 1 cut(s) 896
BclI TGATCA 1 cut(s) 154
BfaI CTAG 1 cut(s) 281
BfmI CTRYAG 1 cut(s) 516
BfoI RGCGCY 1 cut(s) 129
BfuI GTATCC 1 cut(s) 896
BglII AGATCT 1 cut(s) 509
BisI GCNGC 1 cut(s) 704
BlsI GCNGC 1 cut(s) 705
BmcAI AGTACT 1 cut(s) 690
Bme18I GGWCC 2 cut(s) 445, 1053
BmgT120I GGNCC 2 cut(s) 445, 1053
BmiI GGNNCC 2 cut(s) 147, 743
BmsI GCATC 3 cut(s) 370, 466, 558
BpiI GAAGAC 1 cut(s) 114
BpmI CTGGAG 1 cut(s) 329
BpuEI CTTGAG 1 cut(s) 425
BsaAI YACGTR 1 cut(s) 194
BsaJI CCNNGG 4 cut(s) 296, 331, 343, 998
BsaXI ACNNNNNCTCC 2 cut(s) 524, 554
Bsc4I CCNNNNNNNGG 1 cut(s) 880
Bse1I ACTGG 2 cut(s) 775, 839
Bse3DI GCAATG 1 cut(s) 767
BseDI CCNNGG 4 cut(s) 296, 331, 343, 998
BseGI GGATG 1 cut(s) 34
BseLI CCNNNNNNNGG 1 cut(s) 880
BseMI GCAATG 1 cut(s) 767
BseMII CTCAG 3 cut(s) 52, 830, 1057
BseNI ACTGG 2 cut(s) 775, 839
BseRI GAGGAG 1 cut(s) 346
BseXI GCAGC 1 cut(s) 715
BsgI GTGCAG 2 cut(s) 473, 567
BslI CCNNNNNNNGG 1 cut(s) 880
BsmI GAATGC 1 cut(s) 88
Bsp143I GATC 6 cut(s) 94, 154, 499, 509, 534, 913
Bsp19I CCATGG 1 cut(s) 998
BspACI CCGC 3 cut(s) 143, 701, 890
BspCNI CTCAG 3 cut(s) 51, 831, 1056
BspLI GGNNCC 2 cut(s) 147, 743
BsrDI GCAATG 1 cut(s) 767
BsrI ACTGG 2 cut(s) 775, 839
BssECI CCNNGG 4 cut(s) 296, 331, 343, 998
BssMI GATC 6 cut(s) 94, 154, 499, 509, 534, 913
BssNAI GTATAC 1 cut(s) 957
BssT1I CCWWGG 4 cut(s) 296, 331, 343, 998
Bst1107I GTATAC 1 cut(s) 957
Bst4CI ACNGT 2 cut(s) 935, 1006
Bst6I CTCTTC 2 cut(s) 645, 790
BstBAI YACGTR 1 cut(s) 194
BstC8I GCNNGC 1 cut(s) 598
BstDEI CTNAG 3 cut(s) 38, 839, 1043
BstDSI CCRYGG 1 cut(s) 998
BstENI CCTNNNNNAGG 1 cut(s) 878
BstF5I GGATG 1 cut(s) 34
BstH2I RGCGCY 1 cut(s) 129
BstHHI GCGC 1 cut(s) 128
BstKTI GATC 6 cut(s) 97, 157, 502, 512, 537, 916
BstMBI GATC 6 cut(s) 94, 154, 499, 509, 534, 913
BstNSI RCATGY 1 cut(s) 250
BstSFI CTRYAG 1 cut(s) 516
BstV1I GCAGC 1 cut(s) 715
BstV2I GAAGAC 1 cut(s) 114
BstX2I RGATCY 1 cut(s) 509
BstYI RGATCY 1 cut(s) 509
BstZ17I GTATAC 1 cut(s) 957
BsuI GTATCC 1 cut(s) 896
BtgI CCRYGG 1 cut(s) 998
BtsCI GGATG 1 cut(s) 34
BtsIMutI CAGTG 3 cut(s) 401, 768, 940
Cac8I GCNNGC 1 cut(s) 598
CaiI CAGNNNCTG 1 cut(s) 1010
CfoI GCGC 1 cut(s) 128
Cfr13I GGNCC 2 cut(s) 445, 1053
Csp6I GTAC 2 cut(s) 22, 689
CviJI RGCY 8 cut(s) 67, 706, 838, 851, 968, 1040, 1047, 1077
CviKI_1 RGCY 8 cut(s) 67, 706, 838, 851, 968, 1040, 1047, 1077
CviQI GTAC 2 cut(s) 22, 689
DdeI CTNAG 3 cut(s) 38, 839, 1043
DpnI GATC 6 cut(s) 96, 156, 501, 511, 536, 915
DpnII GATC 6 cut(s) 94, 154, 499, 509, 534, 913
DraI TTTAAA 1 cut(s) 591
DrdI GACNNNNNNGTC 1 cut(s) 465
DseDI GACNNNNNNGTC 1 cut(s) 465
Eam1104I CTCTTC 2 cut(s) 645, 790
EarI CTCTTC 2 cut(s) 645, 790
Eco130I CCWWGG 4 cut(s) 296, 331, 343, 998
Eco47I GGWCC 2 cut(s) 445, 1053
Eco57I CTGAAG 1 cut(s) 425
EcoNI CCTNNNNNAGG 1 cut(s) 878
EcoT14I CCWWGG 4 cut(s) 296, 331, 343, 998
EcoT22I ATGCAT 1 cut(s) 573
ErhI CCWWGG 4 cut(s) 296, 331, 343, 998
FalI AAGNNNNNCTT 4 cut(s) 8, 40, 420, 452
FauI CCCGC 1 cut(s) 897
FbaI TGATCA 1 cut(s) 154
FblI GTMKAC 1 cut(s) 956
Fnu4HI GCNGC 1 cut(s) 704
FokI GGATG 1 cut(s) 41
Fsp4HI GCNGC 1 cut(s) 704
FspBI CTAG 1 cut(s) 281
GlaI GCGC 1 cut(s) 127
GluI GCNGC 1 cut(s) 704
GsuI CTGGAG 1 cut(s) 329
HaeII RGCGCY 1 cut(s) 129
HhaI GCGC 1 cut(s) 128
Hin6I GCGC 1 cut(s) 126
HinP1I GCGC 1 cut(s) 126
HinfI GANTC 3 cut(s) 211, 606, 728
HphI GGTGA 3 cut(s) 379, 485, 658
Hpy166II GTNNAC 2 cut(s) 957, 1053
Hpy188I TCNGA 7 cut(s) 41, 94, 225, 504, 567, 727, 1074
Hpy188III TCNNGA 5 cut(s) 208, 308, 377, 739, 976
Hpy8I GTNNAC 2 cut(s) 957, 1053
HpyAV CCTTC 2 cut(s) 394, 1043
HpyCH4III ACNGT 2 cut(s) 935, 1006
HpyCH4IV ACGT 3 cut(s) 20, 193, 711
HpyCH4V TGCA 8 cut(s) 246, 417, 490, 571, 584, 813, 858, 1084
HpyF3I CTNAG 3 cut(s) 38, 839, 1043
HpySE526I ACGT 3 cut(s) 20, 193, 711
HspAI GCGC 1 cut(s) 126
Ksp22I TGATCA 1 cut(s) 154
Kzo9I GATC 6 cut(s) 94, 154, 499, 509, 534, 913
LmnI GCTCC 2 cut(s) 282, 1074
LpnPI CCDG 9 cut(s) 221, 293, 582, 724, 756, 820, 837, 1022, 1061
Lsp1109I GCAGC 1 cut(s) 715
LweI GCATC 3 cut(s) 370, 466, 558
MaeI CTAG 1 cut(s) 281
MaeII ACGT 3 cut(s) 20, 193, 711
MaeIII GTNAC 2 cut(s) 830, 1006
MalI GATC 6 cut(s) 96, 156, 501, 511, 536, 915
MboI GATC 6 cut(s) 94, 154, 499, 509, 534, 913
MboII GAAGA 8 cut(s) 119, 428, 504, 662, 777, 806, 856, 1009
MfeI CAATTG 1 cut(s) 463
MflI RGATCY 1 cut(s) 509
MluCI AATT 9 cut(s) 33, 55, 337, 392, 463, 547, 803, 926, 945
MmeI TCCRAC 2 cut(s) 522, 694
MnlI CCTC 6 cut(s) 35, 175, 367, 371, 646, 944
Mph1103I ATGCAT 1 cut(s) 573
MroXI GAANNNNTTC 1 cut(s) 230
MseI TTAA 3 cut(s) 551, 557, 590
MslI CAYNNNNRTG 3 cut(s) 116, 182, 474
MunI CAATTG 1 cut(s) 463
Mva1269I GAATGC 1 cut(s) 88
NcoI CCATGG 1 cut(s) 998
NdeII GATC 6 cut(s) 94, 154, 499, 509, 534, 913
NlaIV GGNNCC 2 cut(s) 147, 743
NsiI ATGCAT 1 cut(s) 573
NspI RCATGY 1 cut(s) 250
OliI CACNNNNGTG 1 cut(s) 116
PctI GAATGC 1 cut(s) 88
PdmI GAANNNNTTC 1 cut(s) 230
PfeI GAWTC 3 cut(s) 211, 606, 728
PkrI GCNGC 1 cut(s) 705
Ppu21I YACGTR 1 cut(s) 194
PshBI ATTAAT 1 cut(s) 557
Psp1406I AACGTT 1 cut(s) 711
PspN4I GGNNCC 2 cut(s) 147, 743
PspPI GGNCC 2 cut(s) 445, 1053
PstNI CAGNNNCTG 1 cut(s) 1010
PsuI RGATCY 1 cut(s) 509
RsaI GTAC 2 cut(s) 23, 690
RsaNI GTAC 2 cut(s) 22, 689
RseI CAYNNNNRTG 3 cut(s) 116, 182, 474
SaqAI TTAA 3 cut(s) 551, 557, 590
SatI GCNGC 1 cut(s) 704
Sau3AI GATC 6 cut(s) 94, 154, 499, 509, 534, 913
Sau96I GGNCC 2 cut(s) 445, 1053
ScaI AGTACT 1 cut(s) 690
SfaNI GCATC 3 cut(s) 370, 466, 558
SfcI CTRYAG 1 cut(s) 516
SinI GGWCC 2 cut(s) 445, 1053
SmiMI CAYNNNNRTG 3 cut(s) 116, 182, 474
SmlI CTYRAG 1 cut(s) 440
SmoI CTYRAG 1 cut(s) 440
Sse9I AATT 9 cut(s) 33, 55, 337, 392, 463, 547, 803, 926, 945
SsiI CCGC 3 cut(s) 143, 701, 890
SspI AATATT 1 cut(s) 555
SspMI CTAG 1 cut(s) 281
StyI CCWWGG 4 cut(s) 296, 331, 343, 998
TaaI ACNGT 2 cut(s) 935, 1006
TaiI ACGT 3 cut(s) 23, 196, 714
TaqI TCGA 1 cut(s) 498
TasI AATT 9 cut(s) 33, 55, 337, 392, 463, 547, 803, 926, 945
TatI WGTACW 1 cut(s) 688
TfiI GAWTC 3 cut(s) 211, 606, 728
Tru1I TTAA 3 cut(s) 551, 557, 590
Tru9I TTAA 3 cut(s) 551, 557, 590
TscAI CASTG 3 cut(s) 408, 775, 940
TseI GCWGC 1 cut(s) 703
TspRI CASTG 3 cut(s) 408, 775, 940
VpaK11BI GGWCC 2 cut(s) 445, 1053
VspI ATTAAT 1 cut(s) 557
XagI CCTNNNNNAGG 1 cut(s) 878
XapI RAATTY 3 cut(s) 33, 55, 547
XceI RCATGY 1 cut(s) 250
XcmI CCANNNNNNNNNTGG 2 cut(s) 175, 796
XmiI GTMKAC 1 cut(s) 956
XmnI GAANNNNTTC 1 cut(s) 230
XspI CTAG 1 cut(s) 281
ZrmI AGTACT 1 cut(s) 690
Zsp2I ATGCAT 1 cut(s) 573
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.