Rmu_sc0014620.1_g000006

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0014620.1
OG0000417
Physical Location & Seq
Forward (+)
29362 .. 31234
1873 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0014620.1_g000006.1.cds

Sequence Viewer

Length: 1377 bp
atggtagcgtgggctgcagtgggttgcagggcgcgctggaggctggtgctgcaggcgatctgggttcgggtcggtgctgcaggcgatctgggtcgagattgggtcggcgctgtggaggcctggtgccggacggatgtgcagggggctgcagtgcttgcggcttgcggcttgcggcttctgctgctgctcggtggcctgggctgctgctgctgcagaaaaggaagcaagggagtcagagaatgcgaggaatgcaaggaatgcaaattatgcaaaaaaagcaagagaggcaaggaaggcaatgaagaagaatttcaactcatggaacgagtgaaagagagctatttaaatgatgtgcttaaaggcatgatgattccaaccgaaacgttgatggcaaaggttattgatctttcagatcaaaagaatgaaggcactattgggtttgagcaacgtgcccgtggcttctatgcagagccactacttgatattccctcagaagaattcatcaagatgatgatagttgacggttgcttcctcgttcaactatttcggaagtgtaatgatccgacactcagggatatcgaagatctggtattcaacatggattgcatgttccatttcctatgtcatgaccttttgctcctagaaaatcaactaccttggtttgttcttgagagtttatacagccttatccttggaaatggctgcagtcatcaaccctccctcgcttttgtcaacctcgaagccttcatcacattaccatcactaaagcgtagttgcaattcctataaacaacatcttagttcatgtcacggtaacaatgttgatgatgttttgcacgtacttgatctggtaagatcttcgattgttattccatcaaaggtcaaagcccggaaagaaaaaaagttcacgaggctatgtttgacccagagatacatgaaatgcatacggcgacggctctctcaaaggccgggatcaaattcaaaggtgaacctcattgcttttgagcagtgctacaatggttattcaaacgaaattacatcttatgccattttaatggataaccttatctcttccaaggaagacatggaattactttgcaaggcaaaagtaataggtaactggctaagcgaggaagatggttgcaagttcttcaacaacctttacaagggcatcccgcacaacaagttctactatgtccatctctgcaagcaagtcaacgagcattacagaatcagatggcatacatatctggcttcgttgaagattgaaaagttctctaacccctggaaagttattgctttcttcgtagctattgtccttctgggtcttagcttatggacctccacgaataacattcggaccttcatgcagaaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

458

Amino Acids

52.45

Weight (kDa)

8.74

Isoelectric Point (pI)

42.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000417)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g32770 FvH4_4g02520 FvH4_4g02520 FvH4_4g02530 FvH4_4g02550 FvH4_4g17730 FvH4_4g17730
rosa_chinensis RchiOBHm_Chr1g0318801 RchiOBHm_Chr4g0390011 RchiOBHm_Chr4g0390031 RchiOBHm_Chr4g0390041 RchiOBHm_Chr4g0390061 RchiOBHm_Chr4g0390091 RchiOBHm_Chr4g0390101 RchiOBHm_Chr4g0390141 RchiOBHm_Chr4g0390181 RchiOBHm_Chr4g0390191 RchiOBHm_Chr4g0390201 RchiOBHm_Chr4g0390231 RchiOBHm_Chr4g0390241 RchiOBHm_Chr4g0390251 RchiOBHm_Chr4g0390661 RchiOBHm_Chr4g0390711 RchiOBHm_Chr4g0390741 RchiOBHm_Chr4g0390771 RchiOBHm_Chr4g0390801 RchiOBHm_Chr5g0058271
rosa_laevigata RLG00000008685 RLG00000009910 RLG00000009930 RLG00000009932 RLG00000009933 RLG00000009934 RLG00000009935 RLG00000009937 RLG00000009938 RLG00000009940 RLG00000035208 RLG00000035209
rosa_multiflora Rmu_co8281525.1_g000001 Rmu_co8464925.1_g000001 Rmu_sc0000171.1_g000023 Rmu_sc0000171.1_g000027 Rmu_sc0000367.1_g000061 Rmu_sc0000679.1_g000027 Rmu_sc0001380.1_g000026 Rmu_sc0001380.1_g000030 Rmu_sc0001471.1_g000010 Rmu_sc0003643.1_g000007 Rmu_sc0004336.1_g000002 Rmu_sc0004336.1_g000011 Rmu_sc0004336.1_g000012 Rmu_sc0005003.1_g000007 Rmu_sc0005003.1_g000012 Rmu_sc0005003.1_g000016 Rmu_sc0005003.1_g000022 Rmu_sc0008322.1_g000002 Rmu_sc0011197.1_g000004 Rmu_sc0014620.1_g000006 Rmu_sc0014620.1_g000017 Rmu_sc0018617.1_g000002
rosa_roxburghii Rroxscaffold_1G00022270 Rroxscaffold_5G00336180 Rroxscaffold_5G00336220 Rroxscaffold_5G00336240 Rroxscaffold_5G00336250 Rroxscaffold_5G00336290 Rroxscaffold_5G00336310 Rroxscaffold_5G00336350 Rroxscaffold_5G00336370 Rroxscaffold_5G00336670 Rroxscaffold_5G00336700 Rroxscaffold_5G00336710
rosa_rugosa Rorug01G0020300 Rorug03G0327700 Rorug03G0327800 Rorug03G0328000 Rorug03G0328100 Rorug03G0328300 Rorug03G0328600 Rorug03G0328600 Rorug03G0331700 Rorug03G0331800 Rorug05G0312900
rosa_samantha Rh4DG024700 Rh4DG024900 Rh4DG025000 Rh4DG025200 Rh4DG025500 Rh4DG025900 Rh4DG026200 Rh4DG030200 Rh5DG407000
rosa_wichuraiana Rw4G002360 Rw4G002410 Rw4G002420 Rw4G002450 Rw4G002480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 123
AccII CGCG 1 cut(s) 34
AciI CCGC 4 cut(s) 158, 165, 172, 1175
AclI AACGTT 1 cut(s) 383
AclWI GGATC 2 cut(s) 554, 979
AcsI RAATTY 3 cut(s) 308, 497, 976
AfaI GTAC 1 cut(s) 840
AfiI CCNNNNNNNGG 2 cut(s) 126, 1165
AgsI TTSAA 8 cut(s) 314, 539, 595, 981, 1026, 1153, 1261, 1268
AjnI CCWGG 3 cut(s) 119, 195, 1283
AjuI GAANNNNNNNTTGG 2 cut(s) 417, 449
AloI GAACNNNNNNTCC 2 cut(s) 593, 625
AluBI AGCT 3 cut(s) 339, 1310, 1332
AluI AGCT 3 cut(s) 339, 1310, 1332
AlwI GGATC 2 cut(s) 554, 979
AoxI GGCC 3 cut(s) 117, 193, 965
ApoI RAATTY 3 cut(s) 308, 497, 976
Asp700I GAANNNNTTC 1 cut(s) 309
AspLEI GCGC 3 cut(s) 34, 36, 110
AspS9I GGNCC 2 cut(s) 1338, 1359
AsuC2I CCSGG 2 cut(s) 889, 969
AsuHPI GGTGA 1 cut(s) 997
AvaII GGWCC 2 cut(s) 1338, 1359
BaeGI GKGCMC 1 cut(s) 454
BanI GGYRCC 1 cut(s) 123
BauI CACGAG 1 cut(s) 907
BbsI GAAGAC 1 cut(s) 1086
BccI CCATC 6 cut(s) 382, 766, 880, 1130, 1206, 1230
BceAI ACGGC 2 cut(s) 962, 968
BciT130I CCWGG 3 cut(s) 121, 197, 1285
BcnI CCSGG 2 cut(s) 889, 969
BfaI CTAG 1 cut(s) 641
BfmI CTRYAG 6 cut(s) 15, 50, 78, 147, 211, 703
BfoI RGCGCY 1 cut(s) 111
BglII AGATCT 2 cut(s) 583, 854
BlpI GCTNAGC 1 cut(s) 1124
Bme1390I CCNGG 5 cut(s) 121, 197, 889, 969, 1285
Bme18I GGWCC 2 cut(s) 1338, 1359
BmgT120I GGNCC 2 cut(s) 1338, 1359
BmiI GGNNCC 1 cut(s) 125
BmrFI CCNGG 5 cut(s) 121, 197, 889, 969, 1285
BmsI GCATC 1 cut(s) 1179
BpiI GAAGAC 1 cut(s) 1086
BpmI CTGGAG 1 cut(s) 58
Bpu1102I GCTNAGC 1 cut(s) 1124
BpuEI CTTGAG 1 cut(s) 689
BpuMI CCSGG 2 cut(s) 889, 969
BsaAI YACGTR 1 cut(s) 838
BsaJI CCNNGG 6 cut(s) 196, 454, 656, 691, 1074, 1283
BsaXI ACNNNNNCTCC 2 cut(s) 107, 137
Bsc4I CCNNNNNNNGG 2 cut(s) 126, 1165
Bse1I ACTGG 1 cut(s) 1124
Bse3DI GCAATG 2 cut(s) 304, 993
BseBI CCWGG 3 cut(s) 121, 197, 1285
BseDI CCNNGG 6 cut(s) 196, 454, 656, 691, 1074, 1283
BseGI GGATG 2 cut(s) 139, 1170
BseLI CCNNNNNNNGG 2 cut(s) 126, 1165
BseMI GCAATG 2 cut(s) 304, 993
BseMII CTCAG 2 cut(s) 504, 583
BseNI ACTGG 1 cut(s) 1124
BsePI GCGCGC 1 cut(s) 32
BseSI GKGCMC 1 cut(s) 454
BsgI GTGCAG 1 cut(s) 158
Bsh1236I CGCG 1 cut(s) 34
BshFI GGCC 3 cut(s) 119, 195, 967
BshNI GGYRCC 1 cut(s) 123
BsiSI CCGG 3 cut(s) 127, 889, 968
BslI CCNNNNNNNGG 2 cut(s) 126, 1165
BsmI GAATGC 3 cut(s) 245, 254, 263
BsnI GGCC 3 cut(s) 119, 195, 967
Bsp1286I GDGCHC 1 cut(s) 454
Bsp143I GATC 9 cut(s) 57, 85, 403, 412, 559, 583, 844, 854, 971
Bsp1720I GCTNAGC 1 cut(s) 1124
BspACI CCGC 4 cut(s) 158, 165, 172, 1175
BspANI GGCC 3 cut(s) 119, 195, 967
BspCNI CTCAG 2 cut(s) 503, 582
BspFNI CGCG 1 cut(s) 34
BspHI TCATGA 1 cut(s) 625
BspLI GGNNCC 1 cut(s) 125
BspMAI CTGCAG 6 cut(s) 19, 54, 82, 151, 215, 707
BspPI GGATC 2 cut(s) 554, 979
BspT107I GGYRCC 1 cut(s) 123
BsrDI GCAATG 2 cut(s) 304, 993
BsrI ACTGG 1 cut(s) 1124
BssECI CCNNGG 6 cut(s) 196, 454, 656, 691, 1074, 1283
BssHII GCGCGC 1 cut(s) 32
BssMI GATC 9 cut(s) 57, 85, 403, 412, 559, 583, 844, 854, 971
BssSI CACGAG 1 cut(s) 907
BssT1I CCWWGG 3 cut(s) 656, 691, 1074
Bst2BI CACGAG 1 cut(s) 907
Bst2UI CCWGG 3 cut(s) 121, 197, 1285
Bst4CI ACNGT 2 cut(s) 524, 812
Bst6I CTCTTC 1 cut(s) 1075
BstAPI GCANNNNNTGC 3 cut(s) 155, 258, 267
BstBAI YACGTR 1 cut(s) 838
BstC8I GCNNGC 7 cut(s) 34, 54, 82, 156, 163, 170, 1208
BstDEI CTNAG 5 cut(s) 490, 569, 797, 1124, 1328
BstDSI CCRYGG 1 cut(s) 454
BstENI CCTNNNNNAGG 1 cut(s) 1163
BstF5I GGATG 2 cut(s) 139, 1170
BstFNI CGCG 1 cut(s) 34
BstH2I RGCGCY 1 cut(s) 111
BstHHI GCGC 3 cut(s) 34, 36, 110
BstKTI GATC 9 cut(s) 60, 88, 406, 415, 562, 586, 847, 857, 974
BstMBI GATC 9 cut(s) 57, 85, 403, 412, 559, 583, 844, 854, 971
BstNI CCWGG 3 cut(s) 121, 197, 1285
BstNSI RCATGY 1 cut(s) 610
BstSCI CCNGG 5 cut(s) 119, 195, 887, 967, 1283
BstSFI CTRYAG 6 cut(s) 15, 50, 78, 147, 211, 703
BstSLI GKGCMC 1 cut(s) 454
BstUI CGCG 1 cut(s) 34
BstV2I GAAGAC 1 cut(s) 1086
BstX2I RGATCY 2 cut(s) 583, 854
BstXI CCANNNNNNTGG 1 cut(s) 1054
BstYI RGATCY 2 cut(s) 583, 854
BsuRI GGCC 3 cut(s) 119, 195, 967
BtgI CCRYGG 1 cut(s) 454
BtsCI GGATG 2 cut(s) 139, 1170
BtsI GCAGTG 3 cut(s) 24, 156, 1013
BtsIMutI CAGTG 3 cut(s) 24, 156, 1013
Cac8I GCNNGC 7 cut(s) 34, 54, 82, 156, 163, 170, 1208
CciI TCATGA 1 cut(s) 625
CfoI GCGC 3 cut(s) 34, 36, 110
Cfr13I GGNCC 2 cut(s) 1338, 1359
Csp6I GTAC 1 cut(s) 839
CviAII CATG 9 cut(s) 319, 364, 598, 607, 626, 804, 934, 1084, 1366
CviQI GTAC 1 cut(s) 839
DdeI CTNAG 5 cut(s) 490, 569, 797, 1124, 1328
DpnI GATC 9 cut(s) 59, 87, 405, 414, 561, 585, 846, 856, 973
DpnII GATC 9 cut(s) 57, 85, 403, 412, 559, 583, 844, 854, 971
DraI TTTAAA 1 cut(s) 345
Eam1104I CTCTTC 1 cut(s) 1075
EarI CTCTTC 1 cut(s) 1075
Eco130I CCWWGG 3 cut(s) 656, 691, 1074
Eco147I AGGCCT 1 cut(s) 119
Eco32I GATATC 1 cut(s) 577
Eco47I GGWCC 2 cut(s) 1338, 1359
EcoNI CCTNNNNNAGG 1 cut(s) 1163
EcoRI GAATTC 1 cut(s) 497
EcoRII CCWGG 3 cut(s) 119, 195, 1283
EcoRV GATATC 1 cut(s) 577
EcoT14I CCWWGG 3 cut(s) 656, 691, 1074
EcoT22I ATGCAT 1 cut(s) 944
ErhI CCWWGG 3 cut(s) 656, 691, 1074
FaeI CATG 9 cut(s) 322, 367, 601, 610, 629, 807, 937, 1087, 1369
FatI CATG 9 cut(s) 318, 363, 597, 606, 625, 803, 933, 1083, 1365
FauI CCCGC 1 cut(s) 1182
FokI GGATG 2 cut(s) 146, 1157
FspBI CTAG 1 cut(s) 641
GlaI GCGC 3 cut(s) 33, 35, 109
GsuI CTGGAG 1 cut(s) 58
HaeII RGCGCY 1 cut(s) 111
HaeIII GGCC 3 cut(s) 119, 195, 967
HapII CCGG 3 cut(s) 127, 889, 968
HhaI GCGC 3 cut(s) 34, 36, 110
Hin1II CATG 9 cut(s) 322, 367, 601, 610, 629, 807, 937, 1087, 1369
Hin6I GCGC 3 cut(s) 32, 34, 108
HinP1I GCGC 3 cut(s) 32, 34, 108
HincII GTYRAC 3 cut(s) 520, 733, 1216
HindII GTYRAC 3 cut(s) 520, 733, 1216
HinfI GANTC 3 cut(s) 231, 370, 1230
HpaII CCGG 3 cut(s) 127, 889, 968
HphI GGTGA 1 cut(s) 997
Hpy166II GTNNAC 5 cut(s) 520, 733, 906, 988, 1216
Hpy188I TCNGA 7 cut(s) 236, 412, 493, 549, 564, 1235, 1359
Hpy188III TCNNGA 5 cut(s) 95, 505, 626, 668, 907
Hpy8I GTNNAC 5 cut(s) 520, 733, 906, 988, 1216
Hpy99I CGWCG 1 cut(s) 954
HpyAV CCTTC 5 cut(s) 287, 419, 754, 1328, 1372
HpyCH4III ACNGT 2 cut(s) 524, 812
HpyCH4IV ACGT 3 cut(s) 383, 448, 837
HpyF3I CTNAG 5 cut(s) 490, 569, 797, 1124, 1328
HpySE526I ACGT 3 cut(s) 383, 448, 837
Hsp92II CATG 9 cut(s) 322, 367, 601, 610, 629, 807, 937, 1087, 1369
HspAI GCGC 3 cut(s) 32, 34, 108
Kzo9I GATC 9 cut(s) 57, 85, 403, 412, 559, 583, 844, 854, 971
LmnI GCTCC 1 cut(s) 642
LweI GCATC 1 cut(s) 1179
MaeI CTAG 1 cut(s) 641
MaeII ACGT 3 cut(s) 383, 448, 837
MaeIII GTNAC 3 cut(s) 806, 812, 1115
MalI GATC 9 cut(s) 59, 87, 405, 414, 561, 585, 846, 856, 973
MboI GATC 9 cut(s) 57, 85, 403, 412, 559, 583, 844, 854, 971
MflI RGATCY 2 cut(s) 583, 854
MhlI GDGCHC 1 cut(s) 454
MluCI AATT 7 cut(s) 263, 308, 497, 778, 976, 1032, 1088
MlyI GAGTC 1 cut(s) 240
MmeI TCCRAC 2 cut(s) 398, 587
Mph1103I ATGCAT 1 cut(s) 944
MroXI GAANNNNTTC 1 cut(s) 309
MseI TTAA 3 cut(s) 344, 357, 1052
MslI CAYNNNNRTG 2 cut(s) 506, 1052
MspI CCGG 3 cut(s) 127, 889, 968
MspR9I CCNGG 5 cut(s) 121, 197, 889, 969, 1285
Mva1269I GAATGC 3 cut(s) 245, 254, 263
MvaI CCWGG 3 cut(s) 121, 197, 1285
MvnI CGCG 1 cut(s) 34
NciI CCSGG 2 cut(s) 889, 969
NdeII GATC 9 cut(s) 57, 85, 403, 412, 559, 583, 844, 854, 971
NlaIII CATG 9 cut(s) 322, 367, 601, 610, 629, 807, 937, 1087, 1369
NlaIV GGNNCC 1 cut(s) 125
NmuCI GTSAC 1 cut(s) 806
NsiI ATGCAT 1 cut(s) 944
NspI RCATGY 1 cut(s) 610
PagI TCATGA 1 cut(s) 625
PauI GCGCGC 1 cut(s) 32
PceI AGGCCT 1 cut(s) 119
PctI GAATGC 3 cut(s) 245, 254, 263
PdmI GAANNNNTTC 1 cut(s) 309
PfeI GAWTC 2 cut(s) 370, 1230
PleI GAGTC 1 cut(s) 239
PpsI GAGTC 1 cut(s) 239
Ppu21I YACGTR 1 cut(s) 838
Psp1406I AACGTT 1 cut(s) 383
Psp6I CCWGG 3 cut(s) 119, 195, 1283
PspGI CCWGG 3 cut(s) 119, 195, 1283
PspN4I GGNNCC 1 cut(s) 125
PspPI GGNCC 2 cut(s) 1338, 1359
PstI CTGCAG 6 cut(s) 19, 54, 82, 151, 215, 707
PsuI RGATCY 2 cut(s) 583, 854
PteI GCGCGC 1 cut(s) 32
RsaI GTAC 1 cut(s) 840
RsaNI GTAC 1 cut(s) 839
RseI CAYNNNNRTG 2 cut(s) 506, 1052
SaqAI TTAA 3 cut(s) 344, 357, 1052
Sau3AI GATC 9 cut(s) 57, 85, 403, 412, 559, 583, 844, 854, 971
Sau96I GGNCC 2 cut(s) 1338, 1359
SchI GAGTC 1 cut(s) 240
ScrFI CCNGG 5 cut(s) 121, 197, 889, 969, 1285
SduI GDGCHC 1 cut(s) 454
SfaNI GCATC 1 cut(s) 1179
SfcI CTRYAG 6 cut(s) 15, 50, 78, 147, 211, 703
SinI GGWCC 2 cut(s) 1338, 1359
SmiI ATTTAAAT 1 cut(s) 345
SmiMI CAYNNNNRTG 2 cut(s) 506, 1052
SmlI CTYRAG 1 cut(s) 668
SmoI CTYRAG 1 cut(s) 668
Sse9I AATT 7 cut(s) 263, 308, 497, 778, 976, 1032, 1088
SseBI AGGCCT 1 cut(s) 119
SsiI CCGC 4 cut(s) 158, 165, 172, 1175
SspMI CTAG 1 cut(s) 641
StuI AGGCCT 1 cut(s) 119
StyD4I CCNGG 5 cut(s) 119, 195, 887, 967, 1283
StyI CCWWGG 3 cut(s) 656, 691, 1074
SwaI ATTTAAAT 1 cut(s) 345
TaaI ACNGT 2 cut(s) 524, 812
TaiI ACGT 3 cut(s) 386, 451, 840
TaqI TCGA 4 cut(s) 94, 579, 738, 860
TasI AATT 7 cut(s) 263, 308, 497, 778, 976, 1032, 1088
TauI GCSGC 3 cut(s) 161, 168, 175
TfiI GAWTC 2 cut(s) 370, 1230
Tru1I TTAA 3 cut(s) 344, 357, 1052
Tru9I TTAA 3 cut(s) 344, 357, 1052
TscAI CASTG 3 cut(s) 24, 156, 1013
TseFI GTSAC 1 cut(s) 806
Tsp45I GTSAC 1 cut(s) 806
TspDTI ATGAA 7 cut(s) 315, 438, 490, 736, 792, 950, 1354
TspGWI ACGGA 1 cut(s) 146
TspRI CASTG 3 cut(s) 24, 156, 1013
VpaK11BI GGWCC 2 cut(s) 1338, 1359
XagI CCTNNNNNAGG 1 cut(s) 1163
XapI RAATTY 3 cut(s) 308, 497, 976
XceI RCATGY 1 cut(s) 610
XcmI CCANNNNNNNNNTGG 1 cut(s) 1081
XmnI GAANNNNTTC 1 cut(s) 309
XspI CTAG 1 cut(s) 641
Zsp2I ATGCAT 1 cut(s) 944
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.