UPF0481 protein At3g47200-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DUF247 | PF03140 | 23 - 474 | 5.1e-97 | Plant protein of unknown function |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 750 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 292 |
| AccI | GTMKAC | 2 cut(s) | 5, 1334 |
| AccII | CGCG | 2 cut(s) | 424, 1427 |
| AciI | CCGC | 5 cut(s) | 763, 918, 1233, 1268, 1425 |
| AclI | AACGTT | 1 cut(s) | 1050 |
| AcoI | YGGCCR | 2 cut(s) | 46, 957 |
| AcsI | RAATTY | 4 cut(s) | 324, 407, 909, 947 |
| AcuI | CTGAAG | 3 cut(s) | 55, 694, 749 |
| AdeI | CACNNNGTG | 1 cut(s) | 1428 |
| AfaI | GTAC | 1 cut(s) | 916 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 169, 292, 831, 1258, 1381 |
| AjnI | CCWGG | 2 cut(s) | 163, 1376 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 335, 367 |
| AluBI | AGCT | 7 cut(s) | 312, 382, 845, 884, 1045, 1294, 1403 |
| AluI | AGCT | 7 cut(s) | 312, 382, 845, 884, 1045, 1294, 1403 |
| Alw21I | GWGCWC | 2 cut(s) | 90, 384 |
| Alw26I | GTCTC | 1 cut(s) | 88 |
| AoxI | GGCC | 3 cut(s) | 46, 540, 957 |
| ApeKI | GCWGC | 2 cut(s) | 107, 842 |
| ApoI | RAATTY | 4 cut(s) | 324, 407, 909, 947 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 873 |
| AspLEI | GCGC | 3 cut(s) | 368, 424, 426 |
| AspS9I | GGNCC | 3 cut(s) | 137, 540, 834 |
| AsuC2I | CCSGG | 1 cut(s) | 554 |
| AsuHPI | GGTGA | 1 cut(s) | 1414 |
| AvaII | GGWCC | 2 cut(s) | 137, 834 |
| BalI | TGGCCA | 2 cut(s) | 48, 959 |
| BanII | GRGCYC | 1 cut(s) | 384 |
| Bbv12I | GWGCWC | 2 cut(s) | 90, 384 |
| BbvI | GCAGC | 2 cut(s) | 119, 854 |
| BccI | CCATC | 3 cut(s) | 730, 765, 1223 |
| BciT130I | CCWGG | 2 cut(s) | 165, 1378 |
| BcnI | CCSGG | 1 cut(s) | 554 |
| BcoDI | GTCTC | 1 cut(s) | 88 |
| BfaI | CTAG | 1 cut(s) | 608 |
| BglII | AGATCT | 1 cut(s) | 898 |
| BisI | GCNGC | 2 cut(s) | 108, 843 |
| BlsI | GCNGC | 2 cut(s) | 109, 844 |
| Bme1390I | CCNGG | 3 cut(s) | 165, 554, 1378 |
| Bme18I | GGWCC | 2 cut(s) | 137, 834 |
| BmgT120I | GGNCC | 3 cut(s) | 137, 540, 834 |
| BmiI | GGNNCC | 2 cut(s) | 835, 1082 |
| BmrFI | CCNGG | 3 cut(s) | 165, 554, 1378 |
| BmsI | GCATC | 2 cut(s) | 75, 775 |
| BpmI | CTGGAG | 1 cut(s) | 112 |
| BpuEI | CTTGAG | 2 cut(s) | 1052, 1337 |
| BpuMI | CCSGG | 1 cut(s) | 554 |
| BsaAI | YACGTR | 1 cut(s) | 1338 |
| BsaJI | CCNNGG | 3 cut(s) | 163, 623, 1376 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 169, 292, 831, 1258, 1381 |
| Bse1I | ACTGG | 1 cut(s) | 1463 |
| Bse3DI | GCAATG | 3 cut(s) | 274, 1086, 1106 |
| BseBI | CCWGG | 2 cut(s) | 165, 1378 |
| BseDI | CCNNGG | 3 cut(s) | 163, 623, 1376 |
| BseGI | GGATG | 3 cut(s) | 990, 1234, 1263 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 169, 292, 831, 1258, 1381 |
| BseMI | GCAATG | 3 cut(s) | 274, 1086, 1106 |
| BseMII | CTCAG | 2 cut(s) | 399, 550 |
| BseNI | ACTGG | 1 cut(s) | 1463 |
| BsePI | GCGCGC | 1 cut(s) | 422 |
| BseXI | GCAGC | 2 cut(s) | 119, 854 |
| BsgI | GTGCAG | 1 cut(s) | 782 |
| Bsh1236I | CGCG | 2 cut(s) | 424, 1427 |
| BshFI | GGCC | 3 cut(s) | 48, 542, 959 |
| BsiHKAI | GWGCWC | 2 cut(s) | 90, 384 |
| BsiSI | CCGG | 1 cut(s) | 554 |
| BslFI | GGGAC | 2 cut(s) | 309, 847 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 169, 292, 831, 1258, 1381 |
| BsmAI | GTCTC | 1 cut(s) | 88 |
| BsmFI | GGGAC | 2 cut(s) | 309, 847 |
| BsmI | GAATGC | 1 cut(s) | 1315 |
| BsnI | GGCC | 3 cut(s) | 48, 542, 959 |
| Bsp1286I | GDGCHC | 2 cut(s) | 90, 384 |
| Bsp143I | GATC | 4 cut(s) | 25, 388, 808, 898 |
| BspACI | CCGC | 5 cut(s) | 763, 918, 1233, 1268, 1425 |
| BspANI | GGCC | 3 cut(s) | 48, 542, 959 |
| BspCNI | CTCAG | 2 cut(s) | 398, 549 |
| BspFNI | CGCG | 2 cut(s) | 424, 1427 |
| BspHI | TCATGA | 1 cut(s) | 877 |
| BspLI | GGNNCC | 2 cut(s) | 835, 1082 |
| BsrDI | GCAATG | 3 cut(s) | 274, 1086, 1106 |
| BsrI | ACTGG | 1 cut(s) | 1463 |
| BssECI | CCNNGG | 3 cut(s) | 163, 623, 1376 |
| BssHII | GCGCGC | 1 cut(s) | 422 |
| BssMI | GATC | 4 cut(s) | 25, 388, 808, 898 |
| BssNAI | GTATAC | 1 cut(s) | 1335 |
| BssT1I | CCWWGG | 1 cut(s) | 623 |
| Bst1107I | GTATAC | 1 cut(s) | 1335 |
| Bst2UI | CCWGG | 2 cut(s) | 165, 1378 |
| Bst4CI | ACNGT | 4 cut(s) | 491, 510, 572, 641 |
| Bst6I | CTCTTC | 2 cut(s) | 351, 1168 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 63 |
| BstBAI | YACGTR | 1 cut(s) | 1338 |
| BstC8I | GCNNGC | 3 cut(s) | 334, 338, 424 |
| BstDEI | CTNAG | 2 cut(s) | 385, 536 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1256 |
| BstF5I | GGATG | 3 cut(s) | 990, 1234, 1263 |
| BstFNI | CGCG | 2 cut(s) | 424, 1427 |
| BstHHI | GCGC | 3 cut(s) | 368, 424, 426 |
| BstKTI | GATC | 4 cut(s) | 28, 391, 811, 901 |
| BstMAI | GTCTC | 1 cut(s) | 88 |
| BstMBI | GATC | 4 cut(s) | 25, 388, 808, 898 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 54, 63, 264, 421, 978, 1409 |
| BstNI | CCWGG | 2 cut(s) | 165, 1378 |
| BstNSI | RCATGY | 1 cut(s) | 340 |
| BstSCI | CCNGG | 3 cut(s) | 163, 552, 1376 |
| BstUI | CGCG | 2 cut(s) | 424, 1427 |
| BstV1I | GCAGC | 2 cut(s) | 119, 854 |
| BstX2I | RGATCY | 1 cut(s) | 898 |
| BstYI | RGATCY | 1 cut(s) | 898 |
| BstZ17I | GTATAC | 1 cut(s) | 1335 |
| BsuRI | GGCC | 3 cut(s) | 48, 542, 959 |
| BtsCI | GGATG | 3 cut(s) | 990, 1234, 1263 |
| BtsIMutI | CAGTG | 1 cut(s) | 725 |
| Cac8I | GCNNGC | 3 cut(s) | 334, 338, 424 |
| CciI | TCATGA | 1 cut(s) | 877 |
| CfoI | GCGC | 3 cut(s) | 368, 424, 426 |
| Cfr13I | GGNCC | 3 cut(s) | 137, 540, 834 |
| Csp6I | GTAC | 1 cut(s) | 915 |
| CviAII | CATG | 8 cut(s) | 169, 292, 337, 565, 593, 878, 1109, 1329 |
| CviQI | GTAC | 1 cut(s) | 915 |
| DdeI | CTNAG | 2 cut(s) | 385, 536 |
| DpnI | GATC | 4 cut(s) | 27, 390, 810, 900 |
| DpnII | GATC | 4 cut(s) | 25, 388, 808, 898 |
| DraI | TTTAAA | 1 cut(s) | 1000 |
| DraIII | CACNNNGTG | 1 cut(s) | 1428 |
| EaeI | YGGCCR | 2 cut(s) | 46, 957 |
| Eam1104I | CTCTTC | 2 cut(s) | 351, 1168 |
| EarI | CTCTTC | 2 cut(s) | 351, 1168 |
| Ecl136II | GAGCTC | 1 cut(s) | 382 |
| Eco130I | CCWWGG | 1 cut(s) | 623 |
| Eco24I | GRGCYC | 1 cut(s) | 384 |
| Eco47I | GGWCC | 2 cut(s) | 137, 834 |
| Eco53kI | GAGCTC | 1 cut(s) | 382 |
| Eco57I | CTGAAG | 3 cut(s) | 55, 694, 749 |
| EcoICRI | GAGCTC | 1 cut(s) | 382 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1256 |
| EcoO109I | RGGNCCY | 1 cut(s) | 540 |
| EcoRII | CCWGG | 2 cut(s) | 163, 1376 |
| EcoT14I | CCWWGG | 1 cut(s) | 623 |
| EcoT22I | ATGCAT | 1 cut(s) | 68 |
| EcoT38I | GRGCYC | 1 cut(s) | 384 |
| ErhI | CCWWGG | 1 cut(s) | 623 |
| FaeI | CATG | 8 cut(s) | 172, 295, 340, 568, 596, 881, 1112, 1332 |
| FaqI | GGGAC | 2 cut(s) | 309, 847 |
| FatI | CATG | 8 cut(s) | 168, 291, 336, 564, 592, 877, 1108, 1328 |
| FauI | CCCGC | 1 cut(s) | 1275 |
| FblI | GTMKAC | 2 cut(s) | 5, 1334 |
| Fnu4HI | GCNGC | 2 cut(s) | 108, 843 |
| FokI | GGATG | 3 cut(s) | 977, 1241, 1250 |
| FriOI | GRGCYC | 1 cut(s) | 384 |
| Fsp4HI | GCNGC | 2 cut(s) | 108, 843 |
| FspBI | CTAG | 1 cut(s) | 608 |
| GlaI | GCGC | 3 cut(s) | 367, 423, 425 |
| GluI | GCNGC | 2 cut(s) | 108, 843 |
| GsuI | CTGGAG | 1 cut(s) | 112 |
| HaeIII | GGCC | 3 cut(s) | 48, 542, 959 |
| HapII | CCGG | 1 cut(s) | 554 |
| HhaI | GCGC | 3 cut(s) | 368, 424, 426 |
| Hin1II | CATG | 8 cut(s) | 172, 295, 340, 568, 596, 881, 1112, 1332 |
| Hin6I | GCGC | 3 cut(s) | 366, 422, 424 |
| HinP1I | GCGC | 3 cut(s) | 366, 422, 424 |
| HincII | GTYRAC | 1 cut(s) | 487 |
| HindII | GTYRAC | 1 cut(s) | 487 |
| HinfI | GANTC | 5 cut(s) | 768, 1027, 1036, 1417, 1432 |
| HpaII | CCGG | 1 cut(s) | 554 |
| HphI | GGTGA | 1 cut(s) | 1414 |
| Hpy166II | GTNNAC | 3 cut(s) | 6, 487, 1335 |
| Hpy188III | TCNNGA | 7 cut(s) | 91, 155, 472, 878, 1018, 1031, 1078 |
| Hpy8I | GTNNAC | 3 cut(s) | 6, 487, 1335 |
| Hpy99I | CGWCG | 2 cut(s) | 200, 224 |
| HpyAV | CCTTC | 8 cut(s) | 170, 194, 218, 239, 257, 395, 718, 1375 |
| HpyCH4III | ACNGT | 4 cut(s) | 491, 510, 572, 641 |
| HpyCH4IV | ACGT | 4 cut(s) | 84, 123, 1050, 1337 |
| HpyCH4V | TGCA | 8 cut(s) | 57, 66, 340, 437, 799, 1091, 1191, 1299 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 54, 63, 264, 421, 978, 1409 |
| HpyF3I | CTNAG | 2 cut(s) | 385, 536 |
| HpySE526I | ACGT | 4 cut(s) | 84, 123, 1050, 1337 |
| Hsp92II | CATG | 8 cut(s) | 172, 295, 340, 568, 596, 881, 1112, 1332 |
| HspAI | GCGC | 3 cut(s) | 366, 422, 424 |
| Kzo9I | GATC | 4 cut(s) | 25, 388, 808, 898 |
| LmnI | GCTCC | 1 cut(s) | 609 |
| Lsp1109I | GCAGC | 2 cut(s) | 119, 854 |
| LweI | GCATC | 2 cut(s) | 75, 775 |
| MaeI | CTAG | 1 cut(s) | 608 |
| MaeII | ACGT | 4 cut(s) | 84, 123, 1050, 1337 |
| MaeIII | GTNAC | 3 cut(s) | 521, 1208, 1316 |
| MalI | GATC | 4 cut(s) | 27, 390, 810, 900 |
| MboI | GATC | 4 cut(s) | 25, 388, 808, 898 |
| MboII | GAAGA | 4 cut(s) | 61, 368, 1155, 1184 |
| MfeI | CAATTG | 2 cut(s) | 772, 1092 |
| MflI | RGATCY | 1 cut(s) | 898 |
| MhlI | GDGCHC | 2 cut(s) | 90, 384 |
| MlsI | TGGCCA | 2 cut(s) | 48, 959 |
| MluNI | TGGCCA | 2 cut(s) | 48, 959 |
| MlyI | GAGTC | 2 cut(s) | 1411, 1441 |
| MmeI | TCCRAC | 2 cut(s) | 310, 1033 |
| Mox20I | TGGCCA | 2 cut(s) | 48, 959 |
| Mph1103I | ATGCAT | 1 cut(s) | 68 |
| MroXI | GAANNNNTTC | 1 cut(s) | 873 |
| MscI | TGGCCA | 2 cut(s) | 48, 959 |
| MseI | TTAA | 4 cut(s) | 702, 945, 999, 1455 |
| MslI | CAYNNNNRTG | 1 cut(s) | 473 |
| Msp20I | TGGCCA | 2 cut(s) | 48, 959 |
| MspA1I | CMGCKG | 1 cut(s) | 845 |
| MspI | CCGG | 1 cut(s) | 554 |
| MspR9I | CCNGG | 3 cut(s) | 165, 554, 1378 |
| MunI | CAATTG | 2 cut(s) | 772, 1092 |
| Mva1269I | GAATGC | 1 cut(s) | 1315 |
| MvaI | CCWGG | 2 cut(s) | 165, 1378 |
| MvnI | CGCG | 2 cut(s) | 424, 1427 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 54, 63, 264, 421, 978, 1409 |
| NciI | CCSGG | 1 cut(s) | 554 |
| NdeII | GATC | 4 cut(s) | 25, 388, 808, 898 |
| NlaIII | CATG | 8 cut(s) | 172, 295, 340, 568, 596, 881, 1112, 1332 |
| NlaIV | GGNNCC | 2 cut(s) | 835, 1082 |
| NsiI | ATGCAT | 1 cut(s) | 68 |
| NspI | RCATGY | 1 cut(s) | 340 |
| PaeI | GCATGC | 1 cut(s) | 340 |
| PagI | TCATGA | 1 cut(s) | 877 |
| PauI | GCGCGC | 1 cut(s) | 422 |
| PctI | GAATGC | 1 cut(s) | 1315 |
| PdmI | GAANNNNTTC | 1 cut(s) | 873 |
| PfeI | GAWTC | 3 cut(s) | 768, 1027, 1036 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 292 |
| PkrI | GCNGC | 2 cut(s) | 109, 844 |
| PleI | GAGTC | 2 cut(s) | 1411, 1440 |
| PpsI | GAGTC | 2 cut(s) | 1411, 1440 |
| Ppu21I | YACGTR | 1 cut(s) | 1338 |
| PsiI | TTATAA | 1 cut(s) | 750 |
| Psp124BI | GAGCTC | 1 cut(s) | 384 |
| Psp1406I | AACGTT | 1 cut(s) | 1050 |
| Psp6I | CCWGG | 2 cut(s) | 163, 1376 |
| PspGI | CCWGG | 2 cut(s) | 163, 1376 |
| PspN4I | GGNNCC | 2 cut(s) | 835, 1082 |
| PspPI | GGNCC | 3 cut(s) | 137, 540, 834 |
| PsuI | RGATCY | 1 cut(s) | 898 |
| PteI | GCGCGC | 1 cut(s) | 422 |
| PvuII | CAGCTG | 1 cut(s) | 845 |
| RsaI | GTAC | 1 cut(s) | 916 |
| RsaNI | GTAC | 1 cut(s) | 915 |
| RseI | CAYNNNNRTG | 1 cut(s) | 473 |
| SacI | GAGCTC | 1 cut(s) | 384 |
| SaqAI | TTAA | 4 cut(s) | 702, 945, 999, 1455 |
| SatI | GCNGC | 2 cut(s) | 108, 843 |
| Sau3AI | GATC | 4 cut(s) | 25, 388, 808, 898 |
| Sau96I | GGNCC | 3 cut(s) | 137, 540, 834 |
| SchI | GAGTC | 2 cut(s) | 1411, 1441 |
| ScrFI | CCNGG | 3 cut(s) | 165, 554, 1378 |
| SduI | GDGCHC | 2 cut(s) | 90, 384 |
| SfaNI | GCATC | 2 cut(s) | 75, 775 |
| SinI | GGWCC | 2 cut(s) | 137, 834 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 473 |
| SmlI | CTYRAG | 2 cut(s) | 1031, 1352 |
| SmoI | CTYRAG | 2 cut(s) | 1031, 1352 |
| SphI | GCATGC | 1 cut(s) | 340 |
| SsiI | CCGC | 5 cut(s) | 763, 918, 1233, 1268, 1425 |
| SspI | AATATT | 2 cut(s) | 43, 281 |
| SspMI | CTAG | 1 cut(s) | 608 |
| SstI | GAGCTC | 1 cut(s) | 384 |
| StyD4I | CCNGG | 3 cut(s) | 163, 552, 1376 |
| StyI | CCWWGG | 1 cut(s) | 623 |
| TaaI | ACNGT | 4 cut(s) | 491, 510, 572, 641 |
| TaiI | ACGT | 4 cut(s) | 87, 126, 1053, 1340 |
| TfiI | GAWTC | 3 cut(s) | 768, 1027, 1036 |
| Tru1I | TTAA | 4 cut(s) | 702, 945, 999, 1455 |
| Tru9I | TTAA | 4 cut(s) | 702, 945, 999, 1455 |
| TscAI | CASTG | 1 cut(s) | 732 |
| TseI | GCWGC | 2 cut(s) | 107, 842 |
| TspDTI | ATGAA | 9 cut(s) | 53, 134, 336, 414, 457, 569, 866, 882, 894 |
| TspRI | CASTG | 1 cut(s) | 732 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 292 |
| VpaK11BI | GGWCC | 2 cut(s) | 137, 834 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1256 |
| XapI | RAATTY | 4 cut(s) | 324, 407, 909, 947 |
| XceI | RCATGY | 1 cut(s) | 340 |
| XmiI | GTMKAC | 2 cut(s) | 5, 1334 |
| XmnI | GAANNNNTTC | 1 cut(s) | 873 |
| XspI | CTAG | 1 cut(s) | 608 |
| Zsp2I | ATGCAT | 1 cut(s) | 68 |