Rmu_sc0005003.1_g000016

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005003.1
OG0000417
Physical Location & Seq
Forward (+)
60388 .. 60741
354 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005003.1_g000016.1.cds

Sequence Viewer

Length: 354 bp
atgaaggcaagagcgacaataaaactgttcaatcgtaaagctaattttgacccagatcaacatcaaatgcataccgcgacagctctctcaaaagcaaacattaaattccaacctgtcataaaggaaaccataatggacatccgattcaaagaaggtcggtgttgcaggaatgggattcttgtgattccacaaataaacgttggaatgtcatcggaaacattattccggaaccttattgcaatcaagcaatgctaccatggttattcgaatgaaattacatcttatgtcatcttgatggataaccttgtctcttccaaggaagatatggaattactatgcaaggaaaagcaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

117

Amino Acids

13.47

Weight (kDa)

9.14

Isoelectric Point (pI)

34.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000417)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g32770 FvH4_4g02520 FvH4_4g02520 FvH4_4g02530 FvH4_4g02550 FvH4_4g17730 FvH4_4g17730
rosa_chinensis RchiOBHm_Chr1g0318801 RchiOBHm_Chr4g0390011 RchiOBHm_Chr4g0390031 RchiOBHm_Chr4g0390041 RchiOBHm_Chr4g0390061 RchiOBHm_Chr4g0390091 RchiOBHm_Chr4g0390101 RchiOBHm_Chr4g0390141 RchiOBHm_Chr4g0390181 RchiOBHm_Chr4g0390191 RchiOBHm_Chr4g0390201 RchiOBHm_Chr4g0390231 RchiOBHm_Chr4g0390241 RchiOBHm_Chr4g0390251 RchiOBHm_Chr4g0390661 RchiOBHm_Chr4g0390711 RchiOBHm_Chr4g0390741 RchiOBHm_Chr4g0390771 RchiOBHm_Chr4g0390801 RchiOBHm_Chr5g0058271
rosa_laevigata RLG00000008685 RLG00000009910 RLG00000009930 RLG00000009932 RLG00000009933 RLG00000009934 RLG00000009935 RLG00000009937 RLG00000009938 RLG00000009940 RLG00000035208 RLG00000035209
rosa_multiflora Rmu_co8281525.1_g000001 Rmu_co8464925.1_g000001 Rmu_sc0000171.1_g000023 Rmu_sc0000171.1_g000027 Rmu_sc0000367.1_g000061 Rmu_sc0000679.1_g000027 Rmu_sc0001380.1_g000026 Rmu_sc0001380.1_g000030 Rmu_sc0001471.1_g000010 Rmu_sc0003643.1_g000007 Rmu_sc0004336.1_g000002 Rmu_sc0004336.1_g000011 Rmu_sc0004336.1_g000012 Rmu_sc0005003.1_g000007 Rmu_sc0005003.1_g000012 Rmu_sc0005003.1_g000016 Rmu_sc0005003.1_g000022 Rmu_sc0008322.1_g000002 Rmu_sc0011197.1_g000004 Rmu_sc0014620.1_g000006 Rmu_sc0014620.1_g000017 Rmu_sc0018617.1_g000002
rosa_roxburghii Rroxscaffold_1G00022270 Rroxscaffold_5G00336180 Rroxscaffold_5G00336220 Rroxscaffold_5G00336240 Rroxscaffold_5G00336250 Rroxscaffold_5G00336290 Rroxscaffold_5G00336310 Rroxscaffold_5G00336350 Rroxscaffold_5G00336370 Rroxscaffold_5G00336670 Rroxscaffold_5G00336700 Rroxscaffold_5G00336710
rosa_rugosa Rorug01G0020300 Rorug03G0327700 Rorug03G0327800 Rorug03G0328000 Rorug03G0328100 Rorug03G0328300 Rorug03G0328600 Rorug03G0328600 Rorug03G0331700 Rorug03G0331800 Rorug05G0312900
rosa_samantha Rh4DG024700 Rh4DG024900 Rh4DG025000 Rh4DG025200 Rh4DG025500 Rh4DG025900 Rh4DG026200 Rh4DG030200 Rh5DG407000
rosa_wichuraiana Rw4G002360 Rw4G002410 Rw4G002420 Rw4G002450 Rw4G002480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 77
AccIII TCCGGA 1 cut(s) 225
AciI CCGC 1 cut(s) 75
AclI AACGTT 1 cut(s) 198
AcsI RAATTY 1 cut(s) 104
AgsI TTSAA 2 cut(s) 31, 148
AluBI AGCT 2 cut(s) 41, 83
AluI AGCT 2 cut(s) 41, 83
Alw26I GTCTC 1 cut(s) 313
Aor13HI TCCGGA 1 cut(s) 225
ApoI RAATTY 1 cut(s) 104
AsuII TTCGAA 1 cut(s) 266
BccI CCATC 1 cut(s) 289
BcoDI GTCTC 1 cut(s) 313
BmiI GGNNCC 1 cut(s) 230
Bpu14I TTCGAA 1 cut(s) 266
BsaBI GATNNNNATC 1 cut(s) 60
BsaJI CCNNGG 2 cut(s) 256, 315
BsaWI WCCGGW 1 cut(s) 225
Bse3DI GCAATG 1 cut(s) 254
Bse8I GATNNNNATC 1 cut(s) 60
BseAI TCCGGA 1 cut(s) 225
BseDI CCNNGG 2 cut(s) 256, 315
BseGI GGATG 1 cut(s) 138
BseJI GATNNNNATC 1 cut(s) 60
BseMI GCAATG 1 cut(s) 254
Bsh1236I CGCG 1 cut(s) 77
BsiSI CCGG 1 cut(s) 226
BsmAI GTCTC 1 cut(s) 313
Bsp119I TTCGAA 1 cut(s) 266
Bsp13I TCCGGA 1 cut(s) 225
Bsp143I GATC 1 cut(s) 55
Bsp19I CCATGG 1 cut(s) 256
BspACI CCGC 1 cut(s) 75
BspEI TCCGGA 1 cut(s) 225
BspFNI CGCG 1 cut(s) 77
BspLI GGNNCC 1 cut(s) 230
BspT104I TTCGAA 1 cut(s) 266
BsrDI GCAATG 1 cut(s) 254
BssECI CCNNGG 2 cut(s) 256, 315
BssMI GATC 1 cut(s) 55
BssT1I CCWWGG 2 cut(s) 256, 315
Bst4CI ACNGT 1 cut(s) 27
Bst6I CTCTTC 1 cut(s) 316
BstBI TTCGAA 1 cut(s) 266
BstDSI CCRYGG 1 cut(s) 256
BstF5I GGATG 1 cut(s) 138
BstFNI CGCG 1 cut(s) 77
BstKTI GATC 1 cut(s) 58
BstMAI GTCTC 1 cut(s) 313
BstMBI GATC 1 cut(s) 55
BstUI CGCG 1 cut(s) 77
BtgI CCRYGG 1 cut(s) 256
BtsCI GGATG 1 cut(s) 138
CviAII CATG 1 cut(s) 257
CviJI RGCY 2 cut(s) 41, 83
CviKI_1 RGCY 2 cut(s) 41, 83
DpnI GATC 1 cut(s) 57
DpnII GATC 1 cut(s) 55
Eam1104I CTCTTC 1 cut(s) 316
EarI CTCTTC 1 cut(s) 316
Eco130I CCWWGG 2 cut(s) 256, 315
EcoT14I CCWWGG 2 cut(s) 256, 315
EcoT22I ATGCAT 1 cut(s) 72
ErhI CCWWGG 2 cut(s) 256, 315
FaeI CATG 1 cut(s) 260
FaiI YATR 7 cut(s) 72, 119, 131, 258, 285, 326, 337
FatI CATG 1 cut(s) 256
FokI GGATG 1 cut(s) 125
HapII CCGG 1 cut(s) 226
Hin1II CATG 1 cut(s) 260
HinfI GANTC 3 cut(s) 144, 175, 184
HpaII CCGG 1 cut(s) 226
Hpy188I TCNGA 2 cut(s) 143, 214
Hpy188III TCNNGA 2 cut(s) 226, 292
HpyAV CCTTC 1 cut(s) 146
HpyCH4III ACNGT 1 cut(s) 27
HpyCH4IV ACGT 1 cut(s) 198
HpyCH4V TGCA 4 cut(s) 70, 165, 239, 339
HpySE526I ACGT 1 cut(s) 198
Hsp92II CATG 1 cut(s) 260
Kpn2I TCCGGA 1 cut(s) 225
Kzo9I GATC 1 cut(s) 55
LpnPI CCDG 4 cut(s) 66, 126, 151, 239
MaeII ACGT 1 cut(s) 198
MalI GATC 1 cut(s) 57
MboI GATC 1 cut(s) 55
MboII GAAGA 2 cut(s) 303, 332
MluCI AATT 4 cut(s) 43, 104, 273, 329
MmeI TCCRAC 2 cut(s) 133, 181
Mph1103I ATGCAT 1 cut(s) 72
MroI TCCGGA 1 cut(s) 225
MseI TTAA 1 cut(s) 102
MslI CAYNNNNRTG 1 cut(s) 293
MspI CCGG 1 cut(s) 226
MvnI CGCG 1 cut(s) 77
NcoI CCATGG 1 cut(s) 256
NdeII GATC 1 cut(s) 55
NlaIII CATG 1 cut(s) 260
NlaIV GGNNCC 1 cut(s) 230
NsiI ATGCAT 1 cut(s) 72
NspV TTCGAA 1 cut(s) 266
PfeI GAWTC 3 cut(s) 144, 175, 184
Psp1406I AACGTT 1 cut(s) 198
PspN4I GGNNCC 1 cut(s) 230
RseI CAYNNNNRTG 1 cut(s) 293
SaqAI TTAA 1 cut(s) 102
Sau3AI GATC 1 cut(s) 55
SetI ASST 7 cut(s) 43, 85, 115, 157, 201, 234, 306
SfuI TTCGAA 1 cut(s) 266
SmiMI CAYNNNNRTG 1 cut(s) 293
Sse9I AATT 4 cut(s) 43, 104, 273, 329
SsiI CCGC 1 cut(s) 75
StyI CCWWGG 2 cut(s) 256, 315
TaaI ACNGT 1 cut(s) 27
TaiI ACGT 1 cut(s) 201
TaqI TCGA 1 cut(s) 266
TasI AATT 4 cut(s) 43, 104, 273, 329
TfiI GAWTC 3 cut(s) 144, 175, 184
Tru1I TTAA 1 cut(s) 102
Tru9I TTAA 1 cut(s) 102
TspDTI ATGAA 2 cut(s) 17, 285
XapI RAATTY 1 cut(s) 104
XcmI CCANNNNNNNNNTGG 1 cut(s) 322
Zsp2I ATGCAT 1 cut(s) 72
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.