Rh5DG407000

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000417
Physical Location & Seq
Forward (+)
64304397 .. 64306236
1840 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG407000.1

Sequence Viewer

Length: 627 bp
ATGTTCAAAGACCAGACAGAAACGAGATTTGAACAAGCCTTCCTCGATCCAGATATACATGGAATGTACACTGCAACTGCTCTGTCAAAGGCGGGCATAACATGCCGAGGCAACAAAACAGAAAACATAATGGACATACAATTCGAAGAGGGCTGGCTATTCTGCAATGGAGTTCTTAAGATTCCGCAGCTGAACGTCGGAATGCTAACCGAATCATTATTCAGGAACCTCATAGCTTTTGAGCAATGCTATCATGGTATTTCAGATGAAATAACATCTTACGCTGTATTTATGGATAACCTCATCTCTTCCCAAGAAGAAATGGAATTACTTTGTAAGGCAAAAGTAATAGGTAACTGGCTGAGCGATGAAGAGGGTTGCAATTTCTTCAACAACCTTTACAAAGGCATCCCGCGCACCAAGTTCTACTATGGTCCTCTCAGCAAGAAAGTGAAGAAACGTTACGAAATGAATTGGTATACATATGTGGCTTCATTCAAGACTCAAAAGCTTTCTAATCCATGGGCAGTGCTTGCTTTTTGCACAGCTCTTATCCTTCTCGTTCTCCAGCTATGGAACAGCACAAATAGCCTCCGATCCTTCAGGAAGCAAAACCATGGTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

208

Amino Acids

24.11

Weight (kDa)

7.57

Isoelectric Point (pI)

31.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 21 - 189 7.8e-46 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000417)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g32770 FvH4_4g02520 FvH4_4g02520 FvH4_4g02530 FvH4_4g02550 FvH4_4g17730 FvH4_4g17730
rosa_chinensis RchiOBHm_Chr1g0318801 RchiOBHm_Chr4g0390011 RchiOBHm_Chr4g0390031 RchiOBHm_Chr4g0390041 RchiOBHm_Chr4g0390061 RchiOBHm_Chr4g0390091 RchiOBHm_Chr4g0390101 RchiOBHm_Chr4g0390141 RchiOBHm_Chr4g0390181 RchiOBHm_Chr4g0390191 RchiOBHm_Chr4g0390201 RchiOBHm_Chr4g0390231 RchiOBHm_Chr4g0390241 RchiOBHm_Chr4g0390251 RchiOBHm_Chr4g0390661 RchiOBHm_Chr4g0390711 RchiOBHm_Chr4g0390741 RchiOBHm_Chr4g0390771 RchiOBHm_Chr4g0390801 RchiOBHm_Chr5g0058271
rosa_laevigata RLG00000008685 RLG00000009910 RLG00000009930 RLG00000009932 RLG00000009933 RLG00000009934 RLG00000009935 RLG00000009937 RLG00000009938 RLG00000009940 RLG00000035208 RLG00000035209
rosa_multiflora Rmu_co8281525.1_g000001 Rmu_co8464925.1_g000001 Rmu_sc0000171.1_g000023 Rmu_sc0000171.1_g000027 Rmu_sc0000367.1_g000061 Rmu_sc0000679.1_g000027 Rmu_sc0001380.1_g000026 Rmu_sc0001380.1_g000030 Rmu_sc0001471.1_g000010 Rmu_sc0003643.1_g000007 Rmu_sc0004336.1_g000002 Rmu_sc0004336.1_g000011 Rmu_sc0004336.1_g000012 Rmu_sc0005003.1_g000007 Rmu_sc0005003.1_g000012 Rmu_sc0005003.1_g000016 Rmu_sc0005003.1_g000022 Rmu_sc0008322.1_g000002 Rmu_sc0011197.1_g000004 Rmu_sc0014620.1_g000006 Rmu_sc0014620.1_g000017 Rmu_sc0018617.1_g000002
rosa_roxburghii Rroxscaffold_1G00022270 Rroxscaffold_5G00336180 Rroxscaffold_5G00336220 Rroxscaffold_5G00336240 Rroxscaffold_5G00336250 Rroxscaffold_5G00336290 Rroxscaffold_5G00336310 Rroxscaffold_5G00336350 Rroxscaffold_5G00336370 Rroxscaffold_5G00336670 Rroxscaffold_5G00336700 Rroxscaffold_5G00336710
rosa_rugosa Rorug01G0020300 Rorug03G0327700 Rorug03G0327800 Rorug03G0328000 Rorug03G0328100 Rorug03G0328300 Rorug03G0328600 Rorug03G0328600 Rorug03G0331700 Rorug03G0331800 Rorug05G0312900
rosa_samantha Rh4DG024700 Rh4DG024900 Rh4DG025000 Rh4DG025200 Rh4DG025500 Rh4DG025900 Rh4DG026200 Rh4DG030200 Rh5DG407000
rosa_wichuraiana Rw4G002360 Rw4G002410 Rw4G002420 Rw4G002450 Rw4G002480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 479
AccII CGCG 1 cut(s) 415
AciI CCGC 3 cut(s) 92, 185, 413
AclI AACGTT 1 cut(s) 460
AclWI GGATC 2 cut(s) 41, 591
AcuI CTGAAG 1 cut(s) 586
AfaI GTAC 1 cut(s) 68
AflII CTTAAG 1 cut(s) 176
AgsI TTSAA 4 cut(s) 7, 32, 391, 499
AloI GAACNNNNNNTCC 2 cut(s) 24, 56
AluBI AGCT 5 cut(s) 190, 236, 511, 548, 571
AluI AGCT 5 cut(s) 190, 236, 511, 548, 571
AlwI GGATC 2 cut(s) 41, 591
ApeKI GCWGC 1 cut(s) 187
ArsI GACNNNNNNTTYG 2 cut(s) 125, 157
AspLEI GCGC 1 cut(s) 417
AspS9I GGNCC 1 cut(s) 434
AsuII TTCGAA 1 cut(s) 144
AvaII GGWCC 1 cut(s) 434
BarI GAAGNNNNNNTAC 2 cut(s) 446, 478
BbvI GCAGC 1 cut(s) 199
BfrI CTTAAG 1 cut(s) 176
BisI GCNGC 1 cut(s) 188
BlpI GCTNAGC 1 cut(s) 362
BlsI GCNGC 1 cut(s) 189
Bme18I GGWCC 1 cut(s) 434
BmgT120I GGNCC 1 cut(s) 434
BmiI GGNNCC 1 cut(s) 227
BmsI GCATC 1 cut(s) 417
BpmI CTGGAG 1 cut(s) 551
Bpu1102I GCTNAGC 1 cut(s) 362
Bpu14I TTCGAA 1 cut(s) 144
BsaJI CCNNGG 3 cut(s) 106, 521, 616
Bse1I ACTGG 1 cut(s) 362
Bse3DI GCAATG 2 cut(s) 172, 251
BseDI CCNNGG 3 cut(s) 106, 521, 616
BseGI GGATG 1 cut(s) 408
BseMI GCAATG 2 cut(s) 172, 251
BseMII CTCAG 2 cut(s) 353, 454
BseNI ACTGG 1 cut(s) 362
BseXI GCAGC 1 cut(s) 199
Bsh1236I CGCG 1 cut(s) 415
BsmI GAATGC 1 cut(s) 207
Bsp119I TTCGAA 1 cut(s) 144
Bsp1407I TGTACA 1 cut(s) 66
Bsp143I GATC 2 cut(s) 46, 596
Bsp1720I GCTNAGC 1 cut(s) 362
Bsp19I CCATGG 2 cut(s) 521, 616
BspACI CCGC 3 cut(s) 92, 185, 413
BspCNI CTCAG 2 cut(s) 354, 453
BspFNI CGCG 1 cut(s) 415
BspLI GGNNCC 1 cut(s) 227
BspPI GGATC 2 cut(s) 41, 591
BspT104I TTCGAA 1 cut(s) 144
BspTI CTTAAG 1 cut(s) 176
BsrDI GCAATG 2 cut(s) 172, 251
BsrGI TGTACA 1 cut(s) 66
BsrI ACTGG 1 cut(s) 362
BssECI CCNNGG 3 cut(s) 106, 521, 616
BssMI GATC 2 cut(s) 46, 596
BssNAI GTATAC 1 cut(s) 480
BssT1I CCWWGG 2 cut(s) 521, 616
Bst1107I GTATAC 1 cut(s) 480
Bst6I CTCTTC 3 cut(s) 141, 313, 366
BstAFI CTTAAG 1 cut(s) 176
BstAPI GCANNNNNTGC 2 cut(s) 102, 533
BstAUI TGTACA 1 cut(s) 66
BstBI TTCGAA 1 cut(s) 144
BstC8I GCNNGC 3 cut(s) 94, 155, 534
BstDEI CTNAG 2 cut(s) 362, 440
BstDSI CCRYGG 2 cut(s) 521, 616
BstF5I GGATG 1 cut(s) 408
BstFNI CGCG 1 cut(s) 415
BstHHI GCGC 1 cut(s) 417
BstKTI GATC 2 cut(s) 49, 599
BstMBI GATC 2 cut(s) 46, 596
BstMWI GCNNNNNNNGC 4 cut(s) 102, 414, 533, 588
BstNSI RCATGY 1 cut(s) 105
BstUI CGCG 1 cut(s) 415
BstV1I GCAGC 1 cut(s) 199
BstZ17I GTATAC 1 cut(s) 480
BtgI CCRYGG 2 cut(s) 521, 616
BtgZI GCGATG 1 cut(s) 381
BtsCI GGATG 1 cut(s) 408
BtsI GCAGTG 2 cut(s) 69, 534
BtsIMutI CAGTG 2 cut(s) 69, 534
Cac8I GCNNGC 3 cut(s) 94, 155, 534
CfoI GCGC 1 cut(s) 417
Cfr13I GGNCC 1 cut(s) 434
Csp6I GTAC 1 cut(s) 67
CviAII CATG 5 cut(s) 59, 102, 254, 522, 617
CviQI GTAC 1 cut(s) 67
DdeI CTNAG 2 cut(s) 362, 440
DpnI GATC 2 cut(s) 48, 598
DpnII GATC 2 cut(s) 46, 596
Eam1104I CTCTTC 3 cut(s) 141, 313, 366
EarI CTCTTC 3 cut(s) 141, 313, 366
Eco130I CCWWGG 2 cut(s) 521, 616
Eco47I GGWCC 1 cut(s) 434
Eco57I CTGAAG 1 cut(s) 586
EcoT14I CCWWGG 2 cut(s) 521, 616
ErhI CCWWGG 2 cut(s) 521, 616
FaeI CATG 5 cut(s) 62, 105, 257, 525, 620
FatI CATG 5 cut(s) 58, 101, 253, 521, 616
FauI CCCGC 2 cut(s) 85, 420
FauNDI CATATG 1 cut(s) 484
FblI GTMKAC 1 cut(s) 479
Fnu4HI GCNGC 1 cut(s) 188
FokI GGATG 1 cut(s) 395
Fsp4HI GCNGC 1 cut(s) 188
GlaI GCGC 1 cut(s) 416
GluI GCNGC 1 cut(s) 188
GsuI CTGGAG 1 cut(s) 551
HhaI GCGC 1 cut(s) 417
Hin1II CATG 5 cut(s) 62, 105, 257, 525, 620
Hin6I GCGC 1 cut(s) 415
HinP1I GCGC 1 cut(s) 415
HindIII AAGCTT 1 cut(s) 509
HinfI GANTC 3 cut(s) 181, 212, 502
Hpy166II GTNNAC 2 cut(s) 69, 480
Hpy188I TCNGA 3 cut(s) 200, 265, 596
Hpy188III TCNNGA 4 cut(s) 50, 223, 499, 604
Hpy8I GTNNAC 2 cut(s) 69, 480
Hpy99I CGWCG 1 cut(s) 200
HpyAV CCTTC 3 cut(s) 49, 566, 610
HpyCH4IV ACGT 2 cut(s) 195, 460
HpyCH4V TGCA 4 cut(s) 74, 165, 381, 543
HpyF10VI GCNNNNNNNGC 4 cut(s) 102, 414, 533, 588
HpyF3I CTNAG 2 cut(s) 362, 440
HpySE526I ACGT 2 cut(s) 195, 460
Hsp92II CATG 5 cut(s) 62, 105, 257, 525, 620
HspAI GCGC 1 cut(s) 415
Kzo9I GATC 2 cut(s) 46, 596
LpnPI CCDG 7 cut(s) 26, 63, 139, 208, 343, 581, 589
Lsp1109I GCAGC 1 cut(s) 199
LweI GCATC 1 cut(s) 417
MaeII ACGT 2 cut(s) 195, 460
MaeIII GTNAC 2 cut(s) 353, 461
MalI GATC 2 cut(s) 48, 598
MboI GATC 2 cut(s) 46, 596
MboII GAAGA 6 cut(s) 158, 300, 329, 379, 383, 466
MluCI AATT 4 cut(s) 140, 326, 382, 472
MlyI GAGTC 1 cut(s) 496
MmeI TCCRAC 1 cut(s) 178
MnlI CCTC 8 cut(s) 53, 101, 142, 239, 311, 367, 447, 602
MseI TTAA 1 cut(s) 177
MspA1I CMGCKG 1 cut(s) 190
MspCI CTTAAG 1 cut(s) 176
Mva1269I GAATGC 1 cut(s) 207
MvnI CGCG 1 cut(s) 415
MwoI GCNNNNNNNGC 4 cut(s) 102, 414, 533, 588
NcoI CCATGG 2 cut(s) 521, 616
NdeI CATATG 1 cut(s) 484
NdeII GATC 2 cut(s) 46, 596
NlaIII CATG 5 cut(s) 62, 105, 257, 525, 620
NlaIV GGNNCC 1 cut(s) 227
NmeAIII GCCGAG 1 cut(s) 131
NspI RCATGY 1 cut(s) 105
NspV TTCGAA 1 cut(s) 144
PctI GAATGC 1 cut(s) 207
PfeI GAWTC 2 cut(s) 181, 212
PkrI GCNGC 1 cut(s) 189
PleI GAGTC 1 cut(s) 496
PpsI GAGTC 1 cut(s) 496
Psp1406I AACGTT 1 cut(s) 460
PspN4I GGNNCC 1 cut(s) 227
PspPI GGNCC 1 cut(s) 434
PvuII CAGCTG 1 cut(s) 190
RsaI GTAC 1 cut(s) 68
RsaNI GTAC 1 cut(s) 67
SaqAI TTAA 1 cut(s) 177
SatI GCNGC 1 cut(s) 188
Sau3AI GATC 2 cut(s) 46, 596
Sau96I GGNCC 1 cut(s) 434
SchI GAGTC 1 cut(s) 496
SfaNI GCATC 1 cut(s) 417
SfuI TTCGAA 1 cut(s) 144
SinI GGWCC 1 cut(s) 434
SmlI CTYRAG 1 cut(s) 176
SmoI CTYRAG 1 cut(s) 176
Sse9I AATT 4 cut(s) 140, 326, 382, 472
SsiI CCGC 3 cut(s) 92, 185, 413
StyI CCWWGG 2 cut(s) 521, 616
TaiI ACGT 2 cut(s) 198, 463
TaqI TCGA 2 cut(s) 45, 144
TasI AATT 4 cut(s) 140, 326, 382, 472
TatI WGTACW 1 cut(s) 66
TfiI GAWTC 2 cut(s) 181, 212
Tru1I TTAA 1 cut(s) 177
Tru9I TTAA 1 cut(s) 177
TscAI CASTG 2 cut(s) 76, 534
TseI GCWGC 1 cut(s) 187
TspDTI ATGAA 4 cut(s) 282, 384, 483, 485
TspRI CASTG 2 cut(s) 76, 534
Vha464I CTTAAG 1 cut(s) 176
VpaK11BI GGWCC 1 cut(s) 434
XceI RCATGY 1 cut(s) 105
XmiI GTMKAC 1 cut(s) 479
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.