RchiOBHm_Chr4g0390091

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000417
Physical Location & Seq
Reverse (-)
5305770 .. 5306561
792 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36316

Sequence Viewer

Length: 642 bp
ATGCTACCATCATTGAAGCAAAGTTGCTCATCTTATAATAAGCATCTCCGCAGAAAAAAGTGTTTTTGTGATGCTGATTATCTGCACATACTTGATCTGGTAAGAAATTCCATAGTAATTCCATCAGGGACCAAAGCGGCTGGAAAAGAATCTATGTCCAACCCTGAAAAACATGAAGTTGACTCTGGGAACAAACACGAGAGAAACAATAAAGTTGTTCATGAAGCTACCATTGACCCAGATTCACATCAAATTCGTACGGCAACCGCTCTCTCAAAGGCAGATATTAAATTCGAAAGCGTAGAAAAGGAGAGCATAATGGACATCCATTTCAAAACGGGCGGGTGTTTCAGGAATGGGATTCTTAAGATTCCACTGCTAAACGTTGGAATGTCATCGGAAACATTATTCAGGAACCTCATTGCAATCGAGCAATGCTACCATGGTTATTCAAACGACGTTAAATCTTATGCCATCTTTATGGATAACCTCATCTCTTCAAAGGAAGATATGGAATTACTTTGCAAGCAAAAAGTAATAGGTAACTTGATGAGTGACGAAGATGGTTGTAAGTTCTTCAGCAACCTTTACAAGGACATCCCGCACAACAAATTCTCGCATAACAAATTCTACTATATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

213

Amino Acids

24.29

Weight (kDa)

8.1

Isoelectric Point (pI)

50.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 21 - 210 8.1e-35 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000417)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g32770 FvH4_4g02520 FvH4_4g02520 FvH4_4g02530 FvH4_4g02550 FvH4_4g17730 FvH4_4g17730
rosa_chinensis RchiOBHm_Chr1g0318801 RchiOBHm_Chr4g0390011 RchiOBHm_Chr4g0390031 RchiOBHm_Chr4g0390041 RchiOBHm_Chr4g0390061 RchiOBHm_Chr4g0390091 RchiOBHm_Chr4g0390101 RchiOBHm_Chr4g0390141 RchiOBHm_Chr4g0390181 RchiOBHm_Chr4g0390191 RchiOBHm_Chr4g0390201 RchiOBHm_Chr4g0390231 RchiOBHm_Chr4g0390241 RchiOBHm_Chr4g0390251 RchiOBHm_Chr4g0390661 RchiOBHm_Chr4g0390711 RchiOBHm_Chr4g0390741 RchiOBHm_Chr4g0390771 RchiOBHm_Chr4g0390801 RchiOBHm_Chr5g0058271
rosa_laevigata RLG00000008685 RLG00000009910 RLG00000009930 RLG00000009932 RLG00000009933 RLG00000009934 RLG00000009935 RLG00000009937 RLG00000009938 RLG00000009940 RLG00000035208 RLG00000035209
rosa_multiflora Rmu_co8281525.1_g000001 Rmu_co8464925.1_g000001 Rmu_sc0000171.1_g000023 Rmu_sc0000171.1_g000027 Rmu_sc0000367.1_g000061 Rmu_sc0000679.1_g000027 Rmu_sc0001380.1_g000026 Rmu_sc0001380.1_g000030 Rmu_sc0001471.1_g000010 Rmu_sc0003643.1_g000007 Rmu_sc0004336.1_g000002 Rmu_sc0004336.1_g000011 Rmu_sc0004336.1_g000012 Rmu_sc0005003.1_g000007 Rmu_sc0005003.1_g000012 Rmu_sc0005003.1_g000016 Rmu_sc0005003.1_g000022 Rmu_sc0008322.1_g000002 Rmu_sc0011197.1_g000004 Rmu_sc0014620.1_g000006 Rmu_sc0014620.1_g000017 Rmu_sc0018617.1_g000002
rosa_roxburghii Rroxscaffold_1G00022270 Rroxscaffold_5G00336180 Rroxscaffold_5G00336220 Rroxscaffold_5G00336240 Rroxscaffold_5G00336250 Rroxscaffold_5G00336290 Rroxscaffold_5G00336310 Rroxscaffold_5G00336350 Rroxscaffold_5G00336370 Rroxscaffold_5G00336670 Rroxscaffold_5G00336700 Rroxscaffold_5G00336710
rosa_rugosa Rorug01G0020300 Rorug03G0327700 Rorug03G0327800 Rorug03G0328000 Rorug03G0328100 Rorug03G0328300 Rorug03G0328600 Rorug03G0328600 Rorug03G0331700 Rorug03G0331800 Rorug05G0312900
rosa_samantha Rh4DG024700 Rh4DG024900 Rh4DG025000 Rh4DG025200 Rh4DG025500 Rh4DG025900 Rh4DG026200 Rh4DG030200 Rh5DG407000
rosa_wichuraiana Rw4G002360 Rw4G002410 Rw4G002420 Rw4G002450 Rw4G002480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 36
AccBSI CCGCTC 1 cut(s) 269
AciI CCGC 5 cut(s) 49, 137, 267, 342, 602
AclI AACGTT 1 cut(s) 384
AcsI RAATTY 5 cut(s) 106, 252, 290, 611, 626
AcuI CTGAAG 1 cut(s) 562
AfaI GTAC 1 cut(s) 259
AfiI CCNNNNNNNGG 1 cut(s) 592
AflII CTTAAG 1 cut(s) 365
AgsI TTSAA 4 cut(s) 16, 334, 453, 501
AluBI AGCT 1 cut(s) 227
AluI AGCT 1 cut(s) 227
ApoI RAATTY 5 cut(s) 106, 252, 290, 611, 626
AspS9I GGNCC 1 cut(s) 129
AsuII TTCGAA 1 cut(s) 294
AvaII GGWCC 1 cut(s) 129
BauI CACGAG 1 cut(s) 197
BccI CCATC 4 cut(s) 16, 130, 482, 557
BceAI ACGGC 1 cut(s) 276
BfrI CTTAAG 1 cut(s) 365
BisI GCNGC 1 cut(s) 138
BlsI GCNGC 1 cut(s) 139
Bme18I GGWCC 1 cut(s) 129
BmgT120I GGNCC 1 cut(s) 129
BmiI GGNNCC 2 cut(s) 130, 416
BmsI GCATC 2 cut(s) 52, 61
Bpu14I TTCGAA 1 cut(s) 294
BsaBI GATNNNNATC 1 cut(s) 246
BsaJI CCNNGG 1 cut(s) 442
Bsc4I CCNNNNNNNGG 1 cut(s) 592
Bse3DI GCAATG 2 cut(s) 420, 440
Bse8I GATNNNNATC 1 cut(s) 246
BseDI CCNNGG 1 cut(s) 442
BseGI GGATG 2 cut(s) 324, 597
BseJI GATNNNNATC 1 cut(s) 246
BseLI CCNNNNNNNGG 1 cut(s) 592
BseMI GCAATG 2 cut(s) 420, 440
BsgI GTGCAG 1 cut(s) 68
BsiWI CGTACG 1 cut(s) 257
BslFI GGGAC 1 cut(s) 142
BslI CCNNNNNNNGG 1 cut(s) 592
BsmFI GGGAC 1 cut(s) 142
Bsp119I TTCGAA 1 cut(s) 294
Bsp143I GATC 1 cut(s) 94
Bsp19I CCATGG 1 cut(s) 442
BspACI CCGC 5 cut(s) 49, 137, 267, 342, 602
BspHI TCATGA 1 cut(s) 220
BspLI GGNNCC 2 cut(s) 130, 416
BspT104I TTCGAA 1 cut(s) 294
BspTI CTTAAG 1 cut(s) 365
BsrBI CCGCTC 1 cut(s) 269
BsrDI GCAATG 2 cut(s) 420, 440
BssECI CCNNGG 1 cut(s) 442
BssMI GATC 1 cut(s) 94
BssSI CACGAG 1 cut(s) 197
BssT1I CCWWGG 1 cut(s) 442
Bst2BI CACGAG 1 cut(s) 197
Bst6I CTCTTC 1 cut(s) 502
BstAFI CTTAAG 1 cut(s) 365
BstBI TTCGAA 1 cut(s) 294
BstC8I GCNNGC 1 cut(s) 527
BstDSI CCRYGG 1 cut(s) 442
BstENI CCTNNNNNAGG 1 cut(s) 590
BstF5I GGATG 2 cut(s) 324, 597
BstKTI GATC 1 cut(s) 97
BstMBI GATC 1 cut(s) 94
BstXI CCANNNNNNTGG 1 cut(s) 481
BtgI CCRYGG 1 cut(s) 442
BtsCI GGATG 2 cut(s) 324, 597
BtsI GCAGTG 1 cut(s) 374
BtsIMutI CAGTG 1 cut(s) 374
Cac8I GCNNGC 1 cut(s) 527
CciI TCATGA 1 cut(s) 220
Cfr13I GGNCC 1 cut(s) 129
Csp6I GTAC 1 cut(s) 258
CviAII CATG 3 cut(s) 173, 221, 443
CviJI RGCY 2 cut(s) 140, 227
CviKI_1 RGCY 2 cut(s) 140, 227
CviQI GTAC 1 cut(s) 258
DpnI GATC 1 cut(s) 96
DpnII GATC 1 cut(s) 94
Eam1104I CTCTTC 1 cut(s) 502
EarI CTCTTC 1 cut(s) 502
Eco130I CCWWGG 1 cut(s) 442
Eco47I GGWCC 1 cut(s) 129
Eco57I CTGAAG 1 cut(s) 562
EcoNI CCTNNNNNAGG 1 cut(s) 590
EcoT14I CCWWGG 1 cut(s) 442
ErhI CCWWGG 1 cut(s) 442
FaeI CATG 3 cut(s) 176, 224, 446
FaqI GGGAC 1 cut(s) 142
FatI CATG 3 cut(s) 172, 220, 442
FauI CCCGC 2 cut(s) 335, 609
Fnu4HI GCNGC 1 cut(s) 138
FokI GGATG 2 cut(s) 311, 584
Fsp4HI GCNGC 1 cut(s) 138
GluI GCNGC 1 cut(s) 138
Hin1II CATG 3 cut(s) 176, 224, 446
HincII GTYRAC 1 cut(s) 181
HindII GTYRAC 1 cut(s) 181
HinfI GANTC 5 cut(s) 149, 182, 242, 361, 370
Hpy166II GTNNAC 1 cut(s) 181
Hpy188I TCNGA 1 cut(s) 400
Hpy188III TCNNGA 3 cut(s) 221, 352, 412
Hpy8I GTNNAC 1 cut(s) 181
Hpy99I CGWCG 1 cut(s) 461
HpyCH4IV ACGT 2 cut(s) 384, 459
HpyCH4V TGCA 3 cut(s) 85, 425, 525
HpySE526I ACGT 2 cut(s) 384, 459
Hsp92II CATG 3 cut(s) 176, 224, 446
Kzo9I GATC 1 cut(s) 94
LpnPI CCDG 8 cut(s) 83, 111, 126, 171, 177, 252, 337, 397
LweI GCATC 2 cut(s) 52, 61
MaeII ACGT 2 cut(s) 384, 459
MaeIII GTNAC 2 cut(s) 542, 554
MalI GATC 1 cut(s) 96
MbiI CCGCTC 1 cut(s) 269
MboI GATC 1 cut(s) 94
MboII GAAGA 4 cut(s) 489, 518, 568, 572
MluCI AATT 7 cut(s) 106, 117, 252, 290, 515, 611, 626
MlyI GAGTC 1 cut(s) 176
MmeI TCCRAC 2 cut(s) 183, 367
MnlI CCTC 2 cut(s) 428, 500
MseI TTAA 3 cut(s) 288, 366, 462
MslI CAYNNNNRTG 1 cut(s) 479
MspCI CTTAAG 1 cut(s) 365
NcoI CCATGG 1 cut(s) 442
NdeII GATC 1 cut(s) 94
NlaIII CATG 3 cut(s) 176, 224, 446
NlaIV GGNNCC 2 cut(s) 130, 416
NmuCI GTSAC 1 cut(s) 554
NspV TTCGAA 1 cut(s) 294
PagI TCATGA 1 cut(s) 220
PfeI GAWTC 4 cut(s) 149, 242, 361, 370
Pfl23II CGTACG 1 cut(s) 257
PkrI GCNGC 1 cut(s) 139
PleI GAGTC 1 cut(s) 176
PpsI GAGTC 1 cut(s) 176
PsiI TTATAA 1 cut(s) 36
Psp1406I AACGTT 1 cut(s) 384
PspLI CGTACG 1 cut(s) 257
PspN4I GGNNCC 2 cut(s) 130, 416
PspPI GGNCC 1 cut(s) 129
RsaI GTAC 1 cut(s) 259
RsaNI GTAC 1 cut(s) 258
RseI CAYNNNNRTG 1 cut(s) 479
SaqAI TTAA 3 cut(s) 288, 366, 462
SatI GCNGC 1 cut(s) 138
Sau3AI GATC 1 cut(s) 94
Sau96I GGNCC 1 cut(s) 129
SchI GAGTC 1 cut(s) 176
SetI ASST 7 cut(s) 229, 387, 420, 462, 492, 544, 588
SfaNI GCATC 2 cut(s) 52, 61
SfuI TTCGAA 1 cut(s) 294
SinI GGWCC 1 cut(s) 129
SmiMI CAYNNNNRTG 1 cut(s) 479
SmlI CTYRAG 1 cut(s) 365
SmoI CTYRAG 1 cut(s) 365
Sse9I AATT 7 cut(s) 106, 117, 252, 290, 515, 611, 626
SsiI CCGC 5 cut(s) 49, 137, 267, 342, 602
StyI CCWWGG 1 cut(s) 442
TaiI ACGT 2 cut(s) 387, 462
TaqI TCGA 2 cut(s) 294, 429
TasI AATT 7 cut(s) 106, 117, 252, 290, 515, 611, 626
TauI GCSGC 1 cut(s) 140
TfiI GAWTC 4 cut(s) 149, 242, 361, 370
Tru1I TTAA 3 cut(s) 288, 366, 462
Tru9I TTAA 3 cut(s) 288, 366, 462
TscAI CASTG 1 cut(s) 381
TseFI GTSAC 1 cut(s) 554
Tsp45I GTSAC 1 cut(s) 554
TspDTI ATGAA 3 cut(s) 189, 209, 237
TspRI CASTG 1 cut(s) 381
Vha464I CTTAAG 1 cut(s) 365
VpaK11BI GGWCC 1 cut(s) 129
XagI CCTNNNNNAGG 1 cut(s) 590
XapI RAATTY 5 cut(s) 106, 252, 290, 611, 626
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.