FvH4_4g17730

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000417
Physical Location & Seq
Forward (+)
21695178 .. 21697315
2138 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g17730.t1

Sequence Viewer

Length: 1137 bp
ATGGCTGAACATCACAGAAGTGGCAGAGATCAGACAGCGATTGATATTGGCGATGACTGTAAGAAAAGCAAGATATGCAAGAAATGCATTTTCAGAGTTCCTAAGGTGCTCCGGAGACAAAACCCAGAAGCATATACACCTGATGTTGTTTCACTCGGACCTTTTCATTATCGAGGAAAGCGAGGCAAGGAGGAAGGTAAAGAAGGCAAAGGCGAGGAAGATTTCCAACTCATGGAACGAGTGAAAGAGAGCTATTTGAATGAAATTCTCTCAGAGATGAAGAACATAACTTTGAAGGAGTTGACTGCAAAAGTCATTGAGCTCTCAGATCAAAAGGAGGAAGGCGAGTTCGAGCAACAAGCGCGCGATTTCTATTCAGAACCATTTGCTCATATTTCCTCAGAAGACTTCATCGAGATGATGGTAGTTGACGGTTGCTTCCTAATTCAACTGTTCCGGAAATGCAACTATCCCAAACTCAGGGCCTTTGATGATCCGACATTCAACATGGATTGCATGTTTCATTTTCTGTGCCACGACATATTGCTCCTAGAGAATCAACTACCTTGGTTTGTCATCCACAGTTTGTACGACCTCACCCTTGAAATATACCCTGGTCATGAAGCCTCTCTATCTATTCTCATCCTTCAAGCCTTCAGCATACTACCATCACTGAAGCATAGTTGCTCAACCTATAATACGTACCTTGGTAGAAACAAGTGTCATTGCGATACTGATGTCCTGCACATACTTGATATGGTAAGAGCTTCCATAGTAATCCCATTAAAGACCATAGAAGAAAGAGCACATAAAGAACATCAAATGCATCCTCTAACAGCAGATCAAAGACAGAGCAGTAAAGTTGTTCGTAAAGGAATATTTGACCCGGATCATCATCAAATGCATACCGCGACTGCTCTCTCAAAGGCAGACATTAAGTTCGAACCTGTCAGAAGGGAGAGCATAATGGACATCCGGTTCAAAGAAGGCGGGGTTTCGCAGGAATGGAGTTCTTATGATTCCGCAGCTAAACGTTGGAATGTCATCCGAAACAATATTCAGGAACCTCATTGCAATCGAGCAATGCTACCACGGTTATTCGAATGTAATCACATCCTATGCCATCCTGATGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

379

Amino Acids

43.94

Weight (kDa)

6.29

Isoelectric Point (pI)

59.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 30 - 331 1.7e-54 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000417)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g32770 FvH4_4g02520 FvH4_4g02520 FvH4_4g02530 FvH4_4g02550 FvH4_4g17730 FvH4_4g17730
rosa_chinensis RchiOBHm_Chr1g0318801 RchiOBHm_Chr4g0390011 RchiOBHm_Chr4g0390031 RchiOBHm_Chr4g0390041 RchiOBHm_Chr4g0390061 RchiOBHm_Chr4g0390091 RchiOBHm_Chr4g0390101 RchiOBHm_Chr4g0390141 RchiOBHm_Chr4g0390181 RchiOBHm_Chr4g0390191 RchiOBHm_Chr4g0390201 RchiOBHm_Chr4g0390231 RchiOBHm_Chr4g0390241 RchiOBHm_Chr4g0390251 RchiOBHm_Chr4g0390661 RchiOBHm_Chr4g0390711 RchiOBHm_Chr4g0390741 RchiOBHm_Chr4g0390771 RchiOBHm_Chr4g0390801 RchiOBHm_Chr5g0058271
rosa_laevigata RLG00000008685 RLG00000009910 RLG00000009930 RLG00000009932 RLG00000009933 RLG00000009934 RLG00000009935 RLG00000009937 RLG00000009938 RLG00000009940 RLG00000035208 RLG00000035209
rosa_multiflora Rmu_co8281525.1_g000001 Rmu_co8464925.1_g000001 Rmu_sc0000171.1_g000023 Rmu_sc0000171.1_g000027 Rmu_sc0000367.1_g000061 Rmu_sc0000679.1_g000027 Rmu_sc0001380.1_g000026 Rmu_sc0001380.1_g000030 Rmu_sc0001471.1_g000010 Rmu_sc0003643.1_g000007 Rmu_sc0004336.1_g000002 Rmu_sc0004336.1_g000011 Rmu_sc0004336.1_g000012 Rmu_sc0005003.1_g000007 Rmu_sc0005003.1_g000012 Rmu_sc0005003.1_g000016 Rmu_sc0005003.1_g000022 Rmu_sc0008322.1_g000002 Rmu_sc0011197.1_g000004 Rmu_sc0014620.1_g000006 Rmu_sc0014620.1_g000017 Rmu_sc0018617.1_g000002
rosa_roxburghii Rroxscaffold_1G00022270 Rroxscaffold_5G00336180 Rroxscaffold_5G00336220 Rroxscaffold_5G00336240 Rroxscaffold_5G00336250 Rroxscaffold_5G00336290 Rroxscaffold_5G00336310 Rroxscaffold_5G00336350 Rroxscaffold_5G00336370 Rroxscaffold_5G00336670 Rroxscaffold_5G00336700 Rroxscaffold_5G00336710
rosa_rugosa Rorug01G0020300 Rorug03G0327700 Rorug03G0327800 Rorug03G0328000 Rorug03G0328100 Rorug03G0328300 Rorug03G0328600 Rorug03G0328600 Rorug03G0331700 Rorug03G0331800 Rorug05G0312900
rosa_samantha Rh4DG024700 Rh4DG024900 Rh4DG025000 Rh4DG025200 Rh4DG025500 Rh4DG025900 Rh4DG026200 Rh4DG030200 Rh5DG407000
rosa_wichuraiana Rw4G002360 Rw4G002410 Rw4G002420 Rw4G002450 Rw4G002480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 232
AccII CGCG 3 cut(s) 364, 366, 911
AccIII TCCGGA 2 cut(s) 111, 456
AciI CCGC 3 cut(s) 909, 990, 1023
AclI AACGTT 1 cut(s) 1033
AclWI GGATC 2 cut(s) 488, 897
AcsI RAATTY 1 cut(s) 264
AcuI CTGAAG 2 cut(s) 640, 695
AfaI GTAC 2 cut(s) 590, 704
AfiI CCNNNNNNNGG 2 cut(s) 232, 480
AgsI TTSAA 7 cut(s) 259, 295, 449, 505, 605, 650, 982
AjnI CCWGG 1 cut(s) 613
AleI CACNNNNGTG 1 cut(s) 18
AloI GAACNNNNNNTCC 4 cut(s) 332, 364, 962, 994
AluBI AGCT 4 cut(s) 252, 322, 767, 1028
AluI AGCT 4 cut(s) 252, 322, 767, 1028
Alw21I GWGCWC 3 cut(s) 111, 324, 808
Alw26I GTCTC 1 cut(s) 109
AlwI GGATC 2 cut(s) 488, 897
Aor13HI TCCGGA 2 cut(s) 111, 456
AoxI GGCC 1 cut(s) 483
ApeKI GCWGC 1 cut(s) 1025
ApoI RAATTY 1 cut(s) 264
ArsI GACNNNNNNTTYG 2 cut(s) 923, 955
AspLEI GCGC 2 cut(s) 364, 366
AspS9I GGNCC 2 cut(s) 158, 483
AsuC2I CCSGG 1 cut(s) 887
AsuHPI GGTGA 1 cut(s) 589
AsuII TTCGAA 2 cut(s) 942, 1101
AvaII GGWCC 1 cut(s) 158
AxyI CCTNAGG 1 cut(s) 102
BaeI ACNNNNGTAYC 2 cut(s) 723, 756
BanII GRGCYC 1 cut(s) 324
BbsI GAAGAC 1 cut(s) 411
Bbv12I GWGCWC 3 cut(s) 111, 324, 808
BbvI GCAGC 1 cut(s) 1037
BccI CCATC 4 cut(s) 415, 676, 1124, 1131
BciT130I CCWGG 1 cut(s) 615
BcnI CCSGG 1 cut(s) 887
BcoDI GTCTC 1 cut(s) 109
BfaI CTAG 1 cut(s) 551
BisI GCNGC 1 cut(s) 1026
BlsI GCNGC 1 cut(s) 1027
Bme1390I CCNGG 2 cut(s) 615, 887
Bme18I GGWCC 1 cut(s) 158
BmgT120I GGNCC 2 cut(s) 158, 483
BmiI GGNNCC 1 cut(s) 1065
BmrFI CCNGG 2 cut(s) 615, 887
BmsI GCATC 1 cut(s) 835
BpiI GAAGAC 1 cut(s) 411
Bpu14I TTCGAA 2 cut(s) 942, 1101
BpuMI CCSGG 1 cut(s) 887
BsaAI YACGTR 1 cut(s) 702
BsaBI GATNNNNATC 1 cut(s) 894
BsaJI CCNNGG 4 cut(s) 566, 613, 706, 1091
BsaWI WCCGGW 3 cut(s) 111, 456, 975
Bsc4I CCNNNNNNNGG 2 cut(s) 232, 480
Bse21I CCTNAGG 1 cut(s) 102
Bse3DI GCAATG 3 cut(s) 724, 1069, 1089
Bse8I GATNNNNATC 1 cut(s) 894
BseAI TCCGGA 2 cut(s) 111, 456
BseBI CCWGG 1 cut(s) 615
BseDI CCNNGG 4 cut(s) 566, 613, 706, 1091
BseGI GGATG 7 cut(s) 576, 642, 826, 972, 1044, 1113, 1123
BseJI GATNNNNATC 1 cut(s) 894
BseLI CCNNNNNNNGG 2 cut(s) 232, 480
BseMI GCAATG 3 cut(s) 724, 1069, 1089
BseMII CTCAG 4 cut(s) 285, 339, 414, 493
BsePI GCGCGC 1 cut(s) 362
BseXI GCAGC 1 cut(s) 1037
BsgI GTGCAG 1 cut(s) 728
Bsh1236I CGCG 3 cut(s) 364, 366, 911
BshFI GGCC 1 cut(s) 485
BsiHKAI GWGCWC 3 cut(s) 111, 324, 808
BsiSI CCGG 4 cut(s) 112, 457, 887, 976
BslI CCNNNNNNNGG 2 cut(s) 232, 480
BsmAI GTCTC 1 cut(s) 109
BsnI GGCC 1 cut(s) 485
Bsp119I TTCGAA 2 cut(s) 942, 1101
Bsp1286I GDGCHC 3 cut(s) 111, 324, 808
Bsp13I TCCGGA 2 cut(s) 111, 456
Bsp143I GATC 5 cut(s) 28, 328, 493, 841, 889
BspACI CCGC 3 cut(s) 909, 990, 1023
BspANI GGCC 1 cut(s) 485
BspCNI CTCAG 4 cut(s) 284, 338, 413, 492
BspEI TCCGGA 2 cut(s) 111, 456
BspFNI CGCG 3 cut(s) 364, 366, 911
BspHI TCATGA 1 cut(s) 619
BspLI GGNNCC 1 cut(s) 1065
BspPI GGATC 2 cut(s) 488, 897
BspT104I TTCGAA 2 cut(s) 942, 1101
BsrDI GCAATG 3 cut(s) 724, 1069, 1089
BssECI CCNNGG 4 cut(s) 566, 613, 706, 1091
BssHII GCGCGC 1 cut(s) 362
BssMI GATC 5 cut(s) 28, 328, 493, 841, 889
BssT1I CCWWGG 2 cut(s) 566, 706
Bst2UI CCWGG 1 cut(s) 615
Bst4CI ACNGT 5 cut(s) 59, 434, 453, 584, 1095
BstAPI GCANNNNNTGC 2 cut(s) 75, 84
BstBAI YACGTR 1 cut(s) 702
BstBI TTCGAA 2 cut(s) 942, 1101
BstC8I GCNNGC 1 cut(s) 364
BstDEI CTNAG 5 cut(s) 102, 271, 325, 400, 479
BstDSI CCRYGG 1 cut(s) 1091
BstF5I GGATG 7 cut(s) 576, 642, 826, 972, 1044, 1113, 1123
BstFNI CGCG 3 cut(s) 364, 366, 911
BstHHI GCGC 2 cut(s) 364, 366
BstKTI GATC 5 cut(s) 31, 331, 496, 844, 892
BstMAI GTCTC 1 cut(s) 109
BstMBI GATC 5 cut(s) 28, 328, 493, 841, 889
BstMWI GCNNNNNNNGC 3 cut(s) 75, 84, 361
BstNI CCWGG 1 cut(s) 615
BstNSI RCATGY 1 cut(s) 520
BstSCI CCNGG 2 cut(s) 613, 885
BstSNI TACGTA 1 cut(s) 702
BstUI CGCG 3 cut(s) 364, 366, 911
BstV1I GCAGC 1 cut(s) 1037
BstV2I GAAGAC 1 cut(s) 411
BstXI CCANNNNNNTGG 1 cut(s) 1130
Bsu36I CCTNAGG 1 cut(s) 102
BsuRI GGCC 1 cut(s) 485
BtgI CCRYGG 1 cut(s) 1091
BtgZI GCGATG 1 cut(s) 66
BtsCI GGATG 7 cut(s) 576, 642, 826, 972, 1044, 1113, 1123
BtsIMutI CAGTG 1 cut(s) 671
Cac8I GCNNGC 1 cut(s) 364
CciI TCATGA 1 cut(s) 619
CfoI GCGC 2 cut(s) 364, 366
Cfr13I GGNCC 2 cut(s) 158, 483
Csp6I GTAC 2 cut(s) 589, 703
CviAII CATG 4 cut(s) 232, 508, 517, 620
CviJI RGCY 8 cut(s) 5, 252, 322, 485, 626, 653, 767, 1028
CviKI_1 RGCY 8 cut(s) 5, 252, 322, 485, 626, 653, 767, 1028
CviQI GTAC 2 cut(s) 589, 703
DdeI CTNAG 5 cut(s) 102, 271, 325, 400, 479
DpnI GATC 5 cut(s) 30, 330, 495, 843, 891
DpnII GATC 5 cut(s) 28, 328, 493, 841, 889
Ecl136II GAGCTC 1 cut(s) 322
Eco105I TACGTA 1 cut(s) 702
Eco130I CCWWGG 2 cut(s) 566, 706
Eco24I GRGCYC 1 cut(s) 324
Eco47I GGWCC 1 cut(s) 158
Eco53kI GAGCTC 1 cut(s) 322
Eco57I CTGAAG 2 cut(s) 640, 695
Eco81I CCTNAGG 1 cut(s) 102
EcoICRI GAGCTC 1 cut(s) 322
EcoO109I RGGNCCY 1 cut(s) 483
EcoRII CCWGG 1 cut(s) 613
EcoT14I CCWWGG 2 cut(s) 566, 706
EcoT22I ATGCAT 3 cut(s) 89, 828, 906
EcoT38I GRGCYC 1 cut(s) 324
ErhI CCWWGG 2 cut(s) 566, 706
FaeI CATG 4 cut(s) 235, 511, 520, 623
FatI CATG 4 cut(s) 231, 507, 516, 619
FauI CCCGC 1 cut(s) 983
Fnu4HI GCNGC 1 cut(s) 1026
FokI GGATG 7 cut(s) 563, 629, 813, 959, 1031, 1100, 1110
FriOI GRGCYC 1 cut(s) 324
Fsp4HI GCNGC 1 cut(s) 1026
FspBI CTAG 1 cut(s) 551
GlaI GCGC 2 cut(s) 363, 365
GluI GCNGC 1 cut(s) 1026
HaeIII GGCC 1 cut(s) 485
HapII CCGG 4 cut(s) 112, 457, 887, 976
HhaI GCGC 2 cut(s) 364, 366
Hin1II CATG 4 cut(s) 235, 511, 520, 623
Hin6I GCGC 2 cut(s) 362, 364
HinP1I GCGC 2 cut(s) 362, 364
HincII GTYRAC 2 cut(s) 303, 430
HindII GTYRAC 2 cut(s) 303, 430
HinfI GANTC 2 cut(s) 556, 1019
HpaII CCGG 4 cut(s) 112, 457, 887, 976
HphI GGTGA 1 cut(s) 589
Hpy166II GTNNAC 2 cut(s) 303, 430
Hpy188III TCNNGA 6 cut(s) 112, 415, 457, 620, 1061, 1127
Hpy8I GTNNAC 2 cut(s) 303, 430
HpyAV CCTTC 8 cut(s) 188, 197, 289, 335, 656, 664, 948, 980
HpyCH4III ACNGT 5 cut(s) 59, 434, 453, 584, 1095
HpyCH4IV ACGT 2 cut(s) 701, 1033
HpyCH4V TGCA 9 cut(s) 78, 87, 308, 465, 516, 745, 826, 904, 1074
HpyF10VI GCNNNNNNNGC 3 cut(s) 75, 84, 361
HpyF3I CTNAG 5 cut(s) 102, 271, 325, 400, 479
HpySE526I ACGT 2 cut(s) 701, 1033
Hsp92II CATG 4 cut(s) 235, 511, 520, 623
HspAI GCGC 2 cut(s) 362, 364
Kpn2I TCCGGA 2 cut(s) 111, 456
Kzo9I GATC 5 cut(s) 28, 328, 493, 841, 889
LmnI GCTCC 2 cut(s) 114, 552
Lsp1109I GCAGC 1 cut(s) 1037
LweI GCATC 1 cut(s) 835
MaeI CTAG 1 cut(s) 551
MaeII ACGT 2 cut(s) 701, 1033
MalI GATC 5 cut(s) 30, 330, 495, 843, 891
MboI GATC 5 cut(s) 28, 328, 493, 841, 889
MboII GAAGA 4 cut(s) 230, 292, 416, 809
MhlI GDGCHC 3 cut(s) 111, 324, 808
MluCI AATT 2 cut(s) 264, 444
MmeI TCCRAC 3 cut(s) 250, 521, 1016
Mph1103I ATGCAT 3 cut(s) 89, 828, 906
MroI TCCGGA 2 cut(s) 111, 456
MseI TTAA 2 cut(s) 785, 936
MslI CAYNNNNRTG 3 cut(s) 18, 416, 1128
MspI CCGG 4 cut(s) 112, 457, 887, 976
MspR9I CCNGG 2 cut(s) 615, 887
MvaI CCWGG 1 cut(s) 615
MvnI CGCG 3 cut(s) 364, 366, 911
MwoI GCNNNNNNNGC 3 cut(s) 75, 84, 361
NciI CCSGG 1 cut(s) 887
NdeII GATC 5 cut(s) 28, 328, 493, 841, 889
NlaIII CATG 4 cut(s) 235, 511, 520, 623
NlaIV GGNNCC 1 cut(s) 1065
NsiI ATGCAT 3 cut(s) 89, 828, 906
NspI RCATGY 1 cut(s) 520
NspV TTCGAA 2 cut(s) 942, 1101
OliI CACNNNNGTG 1 cut(s) 18
PagI TCATGA 1 cut(s) 619
PauI GCGCGC 1 cut(s) 362
PcsI WCGNNNNNNNCGW 1 cut(s) 178
PfeI GAWTC 2 cut(s) 556, 1019
PflMI CCANNNNNTGG 1 cut(s) 232
PkrI GCNGC 1 cut(s) 1027
Ppu21I YACGTR 1 cut(s) 702
Psp124BI GAGCTC 1 cut(s) 324
Psp1406I AACGTT 1 cut(s) 1033
Psp6I CCWGG 1 cut(s) 613
PspGI CCWGG 1 cut(s) 613
PspN4I GGNNCC 1 cut(s) 1065
PspPI GGNCC 2 cut(s) 158, 483
PteI GCGCGC 1 cut(s) 362
RsaI GTAC 2 cut(s) 590, 704
RsaNI GTAC 2 cut(s) 589, 703
RseI CAYNNNNRTG 3 cut(s) 18, 416, 1128
SacI GAGCTC 1 cut(s) 324
SaqAI TTAA 2 cut(s) 785, 936
SatI GCNGC 1 cut(s) 1026
Sau3AI GATC 5 cut(s) 28, 328, 493, 841, 889
Sau96I GGNCC 2 cut(s) 158, 483
ScrFI CCNGG 2 cut(s) 615, 887
SduI GDGCHC 3 cut(s) 111, 324, 808
SfaNI GCATC 1 cut(s) 835
SfuI TTCGAA 2 cut(s) 942, 1101
SinI GGWCC 1 cut(s) 158
SmiMI CAYNNNNRTG 3 cut(s) 18, 416, 1128
SnaBI TACGTA 1 cut(s) 702
Sse9I AATT 2 cut(s) 264, 444
SsiI CCGC 3 cut(s) 909, 990, 1023
SspI AATATT 2 cut(s) 879, 1057
SspMI CTAG 1 cut(s) 551
SstI GAGCTC 1 cut(s) 324
StyD4I CCNGG 2 cut(s) 613, 885
StyI CCWWGG 2 cut(s) 566, 706
TaaI ACNGT 5 cut(s) 59, 434, 453, 584, 1095
TaiI ACGT 2 cut(s) 704, 1036
TaqI TCGA 6 cut(s) 172, 351, 414, 942, 1078, 1101
TasI AATT 2 cut(s) 264, 444
TfiI GAWTC 2 cut(s) 556, 1019
Tru1I TTAA 2 cut(s) 785, 936
Tru9I TTAA 2 cut(s) 785, 936
TscAI CASTG 1 cut(s) 678
TseI GCWGC 1 cut(s) 1025
TspDTI ATGAA 6 cut(s) 155, 276, 293, 400, 512, 636
TspRI CASTG 1 cut(s) 678
Van91I CCANNNNNTGG 1 cut(s) 232
VpaK11BI GGWCC 1 cut(s) 158
XapI RAATTY 1 cut(s) 264
XceI RCATGY 1 cut(s) 520
XspI CTAG 1 cut(s) 551
Zsp2I ATGCAT 3 cut(s) 89, 828, 906
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.