Rroxscaffold_5G00336290

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000417
Physical Location & Seq
Reverse (-)
4097548 .. 4099018
1471 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00336290.1

Sequence Viewer

Length: 1221 bp
ATGTCTGTAAATCATAAAAGTGGTAAAGATCATTTAGTTATCGATATTATTGACAAGAAATGCATCTTCAGAGTTCCTAACGTGCTCCGGAGACAAAACCCCGAGGCATATACACCTGACGTTGTTTCAATCGGACCTTTACATCATTATCGAGAAAAGCGAGGCAAGGAAGAAGGTAATGGAGGCAAGGAAGACAAAGAAGACAAAGGCGAGGAAGATTTCCAACTCCTGAAACGAGTGAAAAAAAGCTATCTGAACGAAATTCTCGCACGTATGAAGAATATAACTTTGGAAGAGTTGACCACAAAAGTCACTGAGCTCTCAGATAAGAAGAATGAAGGTGGGTTTGAGGAACGAGCTCGCAACTTTTATGCAGAACCACTTGATCATATTCCTTCCAAAGACTTCATCGAGATGATGATAGTTGGCGGTTGCTTCCTAGTTCAACTATTTCGGAAGTGTAAACATTCCAATCTCAGGGCCTCAGATGACCTGGTGTTCAACATGGACTCTTCCATAGTTATTCCATTGAAGACCATAGATGCGAGAGTAGCTAGAAAAGAATCTATGTCCGACCGAGCTGAAGAACATCAAGTGCATAAAAGGACCGTAGACAAGGCAGAGACTAAATCTGTTCATGAAGCTATGTTTGACCCAGATCTACATCAAATTCGTACCGCAACCGCTCTCTCAAAGGCAGACATTAAATTCGAAAAAGTCATAAGGGAGAGCATAATGGACATTCGATTCAGAGTGGGTGGGTGGTTCAGGAATGGGATTCTAGAGATTCCACAGCTAAACGTTGGAATGTCATCGGAAACATTATTCAGGAACCTTATTGCAATTGAGCAATGCTTCCATGGTTATTCAAACGAGATAACATCTTATGCCATCTTTATGGATAACCTCATCTCTTCAAAGGAAGATATGGAATTACTTTGCAAGAAACAAGTAATTGGTAACTGGATGAGTGATGAAGATGGTTGTGAGTTCTTCAGCAATCTTTACAAGGACATCCCACACAACAAGTTCTACTATTATGGTCTGTGCAAGCAAGTGAATGCTCGTTACAGATCGAGATGGTATACATGGTTGGCTTTACTCAAGAGTGAAAAATTTTCTAACCCCTGGAGAATTTTGGCTTTCGGGATAGGTATTGTCGTTTTGATTCTCACCGCGTGGAGTCAGACAAACAACATTCGGGTTAACATGCATAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

406

Amino Acids

47.18

Weight (kDa)

8.49

Isoelectric Point (pI)

45.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 22 - 170 1e-25 Plant protein of unknown function
DUF247 PF03140 199 - 391 2.5e-47 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000417)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g32770 FvH4_4g02520 FvH4_4g02520 FvH4_4g02530 FvH4_4g02550 FvH4_4g17730 FvH4_4g17730
rosa_chinensis RchiOBHm_Chr1g0318801 RchiOBHm_Chr4g0390011 RchiOBHm_Chr4g0390031 RchiOBHm_Chr4g0390041 RchiOBHm_Chr4g0390061 RchiOBHm_Chr4g0390091 RchiOBHm_Chr4g0390101 RchiOBHm_Chr4g0390141 RchiOBHm_Chr4g0390181 RchiOBHm_Chr4g0390191 RchiOBHm_Chr4g0390201 RchiOBHm_Chr4g0390231 RchiOBHm_Chr4g0390241 RchiOBHm_Chr4g0390251 RchiOBHm_Chr4g0390661 RchiOBHm_Chr4g0390711 RchiOBHm_Chr4g0390741 RchiOBHm_Chr4g0390771 RchiOBHm_Chr4g0390801 RchiOBHm_Chr5g0058271
rosa_laevigata RLG00000008685 RLG00000009910 RLG00000009930 RLG00000009932 RLG00000009933 RLG00000009934 RLG00000009935 RLG00000009937 RLG00000009938 RLG00000009940 RLG00000035208 RLG00000035209
rosa_multiflora Rmu_co8281525.1_g000001 Rmu_co8464925.1_g000001 Rmu_sc0000171.1_g000023 Rmu_sc0000171.1_g000027 Rmu_sc0000367.1_g000061 Rmu_sc0000679.1_g000027 Rmu_sc0001380.1_g000026 Rmu_sc0001380.1_g000030 Rmu_sc0001471.1_g000010 Rmu_sc0003643.1_g000007 Rmu_sc0004336.1_g000002 Rmu_sc0004336.1_g000011 Rmu_sc0004336.1_g000012 Rmu_sc0005003.1_g000007 Rmu_sc0005003.1_g000012 Rmu_sc0005003.1_g000016 Rmu_sc0005003.1_g000022 Rmu_sc0008322.1_g000002 Rmu_sc0011197.1_g000004 Rmu_sc0014620.1_g000006 Rmu_sc0014620.1_g000017 Rmu_sc0018617.1_g000002
rosa_roxburghii Rroxscaffold_1G00022270 Rroxscaffold_5G00336180 Rroxscaffold_5G00336220 Rroxscaffold_5G00336240 Rroxscaffold_5G00336250 Rroxscaffold_5G00336290 Rroxscaffold_5G00336310 Rroxscaffold_5G00336350 Rroxscaffold_5G00336370 Rroxscaffold_5G00336670 Rroxscaffold_5G00336700 Rroxscaffold_5G00336710
rosa_rugosa Rorug01G0020300 Rorug03G0327700 Rorug03G0327800 Rorug03G0328000 Rorug03G0328100 Rorug03G0328300 Rorug03G0328600 Rorug03G0328600 Rorug03G0331700 Rorug03G0331800 Rorug05G0312900
rosa_samantha Rh4DG024700 Rh4DG024900 Rh4DG025000 Rh4DG025200 Rh4DG025500 Rh4DG025900 Rh4DG026200 Rh4DG030200 Rh5DG407000
rosa_wichuraiana Rw4G002360 Rw4G002410 Rw4G002420 Rw4G002450 Rw4G002480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 686
AccI GTMKAC 2 cut(s) 612, 1085
AccII CGCG 1 cut(s) 1178
AccIII TCCGGA 1 cut(s) 87
AciI CCGC 4 cut(s) 429, 678, 684, 1176
AclI AACGTT 1 cut(s) 801
AcsI RAATTY 5 cut(s) 261, 669, 707, 1115, 1134
AcuI CTGAAG 3 cut(s) 52, 603, 979
AdeI CACNNNGTG 1 cut(s) 1179
AfaI GTAC 1 cut(s) 676
AfiI CCNNNNNNNGG 1 cut(s) 477
AgsI TTSAA 6 cut(s) 129, 446, 502, 532, 870, 918
AjnI CCWGG 2 cut(s) 492, 1127
AjuI GAANNNNNNNTTGG 2 cut(s) 272, 304
AluBI AGCT 7 cut(s) 249, 319, 359, 554, 581, 644, 796
AluI AGCT 7 cut(s) 249, 319, 359, 554, 581, 644, 796
Alw21I GWGCWC 3 cut(s) 87, 321, 361
Alw26I GTCTC 2 cut(s) 85, 617
Ama87I CYCGRG 1 cut(s) 101
Aor13HI TCCGGA 1 cut(s) 87
AoxI GGCC 1 cut(s) 480
ApoI RAATTY 5 cut(s) 261, 669, 707, 1115, 1134
ArsI GACNNNNNNTTYG 2 cut(s) 692, 724
AspS9I GGNCC 3 cut(s) 134, 480, 606
AsuHPI GGTGA 1 cut(s) 1165
AsuII TTCGAA 1 cut(s) 711
AvaI CYCGRG 1 cut(s) 101
AvaII GGWCC 2 cut(s) 134, 606
BanII GRGCYC 2 cut(s) 321, 361
BbsI GAAGAC 3 cut(s) 198, 207, 539
Bbv12I GWGCWC 3 cut(s) 87, 321, 361
BccI CCATC 3 cut(s) 899, 974, 1074
BciT130I CCWGG 2 cut(s) 494, 1129
BclI TGATCA 1 cut(s) 385
BcoDI GTCTC 2 cut(s) 85, 617
BfaI CTAG 3 cut(s) 440, 555, 782
BglII AGATCT 1 cut(s) 658
Bme1390I CCNGG 2 cut(s) 494, 1129
Bme18I GGWCC 2 cut(s) 134, 606
BmeT110I CYCGRG 1 cut(s) 101
BmgT120I GGNCC 3 cut(s) 134, 480, 606
BmiI GGNNCC 1 cut(s) 833
BmrFI CCNGG 2 cut(s) 494, 1129
BmsI GCATC 2 cut(s) 72, 532
BpiI GAAGAC 3 cut(s) 198, 207, 539
BpmI CTGGAG 1 cut(s) 1150
Bpu14I TTCGAA 1 cut(s) 711
BpuEI CTTGAG 1 cut(s) 1088
Bsa29I ATCGAT 1 cut(s) 42
BsaAI YACGTR 1 cut(s) 272
BsaBI GATNNNNATC 1 cut(s) 663
BsaJI CCNNGG 3 cut(s) 102, 859, 1127
BsaWI WCCGGW 1 cut(s) 87
Bsc4I CCNNNNNNNGG 1 cut(s) 477
Bse1I ACTGG 1 cut(s) 968
Bse3DI GCAATG 1 cut(s) 857
Bse8I GATNNNNATC 1 cut(s) 663
BseAI TCCGGA 1 cut(s) 87
BseBI CCWGG 2 cut(s) 494, 1129
BseCI ATCGAT 1 cut(s) 42
BseDI CCNNGG 3 cut(s) 102, 859, 1127
BseGI GGATG 2 cut(s) 972, 1014
BseJI GATNNNNATC 1 cut(s) 663
BseLI CCNNNNNNNGG 1 cut(s) 477
BseMI GCAATG 1 cut(s) 857
BseMII CTCAG 4 cut(s) 306, 336, 490, 498
BseNI ACTGG 1 cut(s) 968
Bsh1236I CGCG 1 cut(s) 1178
Bsh1285I CGRYCG 1 cut(s) 577
BshFI GGCC 1 cut(s) 482
BshVI ATCGAT 1 cut(s) 42
BsiEI CGRYCG 1 cut(s) 577
BsiHKAI GWGCWC 3 cut(s) 87, 321, 361
BsiHKCI CYCGRG 1 cut(s) 101
BsiSI CCGG 1 cut(s) 88
BslI CCNNNNNNNGG 1 cut(s) 477
BsmAI GTCTC 2 cut(s) 85, 617
BsmI GAATGC 1 cut(s) 1066
BsnI GGCC 1 cut(s) 482
BsoBI CYCGRG 1 cut(s) 101
Bsp119I TTCGAA 1 cut(s) 711
Bsp1286I GDGCHC 3 cut(s) 87, 321, 361
Bsp13I TCCGGA 1 cut(s) 87
Bsp143I GATC 4 cut(s) 28, 385, 658, 1073
Bsp19I CCATGG 1 cut(s) 859
BspACI CCGC 4 cut(s) 429, 678, 684, 1176
BspANI GGCC 1 cut(s) 482
BspCNI CTCAG 4 cut(s) 307, 335, 489, 497
BspDI ATCGAT 1 cut(s) 42
BspEI TCCGGA 1 cut(s) 87
BspFNI CGCG 1 cut(s) 1178
BspHI TCATGA 1 cut(s) 637
BspLI GGNNCC 1 cut(s) 833
BspT104I TTCGAA 1 cut(s) 711
BsrBI CCGCTC 1 cut(s) 686
BsrDI GCAATG 1 cut(s) 857
BsrI ACTGG 1 cut(s) 968
BssECI CCNNGG 3 cut(s) 102, 859, 1127
BssMI GATC 4 cut(s) 28, 385, 658, 1073
BssNAI GTATAC 1 cut(s) 1086
BssT1I CCWWGG 1 cut(s) 859
Bst1107I GTATAC 1 cut(s) 1086
Bst2UI CCWGG 2 cut(s) 494, 1129
Bst4CI ACNGT 1 cut(s) 610
Bst6I CTCTTC 3 cut(s) 288, 517, 919
BstBAI YACGTR 1 cut(s) 272
BstBI TTCGAA 1 cut(s) 711
BstC8I GCNNGC 2 cut(s) 361, 1052
BstDEI CTNAG 4 cut(s) 315, 322, 476, 484
BstDSI CCRYGG 1 cut(s) 859
BstF5I GGATG 2 cut(s) 972, 1014
BstFNI CGCG 1 cut(s) 1178
BstKTI GATC 4 cut(s) 31, 388, 661, 1076
BstMAI GTCTC 2 cut(s) 85, 617
BstMBI GATC 4 cut(s) 28, 385, 658, 1073
BstMCI CGRYCG 1 cut(s) 577
BstMWI GCNNNNNNNGC 1 cut(s) 551
BstNI CCWGG 2 cut(s) 494, 1129
BstNSI RCATGY 1 cut(s) 1213
BstSCI CCNGG 2 cut(s) 492, 1127
BstUI CGCG 1 cut(s) 1178
BstV2I GAAGAC 3 cut(s) 198, 207, 539
BstX2I RGATCY 1 cut(s) 658
BstXI CCANNNNNNTGG 1 cut(s) 898
BstYI RGATCY 1 cut(s) 658
BstZ17I GTATAC 1 cut(s) 1086
Bsu15I ATCGAT 1 cut(s) 42
BsuRI GGCC 1 cut(s) 482
BsuTUI ATCGAT 1 cut(s) 42
BtgI CCRYGG 1 cut(s) 859
BtsCI GGATG 2 cut(s) 972, 1014
BtsIMutI CAGTG 1 cut(s) 312
Cac8I GCNNGC 2 cut(s) 361, 1052
CciI TCATGA 1 cut(s) 637
Cfr13I GGNCC 3 cut(s) 134, 480, 606
ClaI ATCGAT 1 cut(s) 42
CsiI ACCWGGT 1 cut(s) 492
Csp6I GTAC 1 cut(s) 675
CviAII CATG 5 cut(s) 505, 638, 860, 1089, 1210
CviQI GTAC 1 cut(s) 675
DdeI CTNAG 4 cut(s) 315, 322, 476, 484
DpnI GATC 4 cut(s) 30, 387, 660, 1075
DpnII GATC 4 cut(s) 28, 385, 658, 1073
DraIII CACNNNGTG 1 cut(s) 1179
Eam1104I CTCTTC 3 cut(s) 288, 517, 919
EarI CTCTTC 3 cut(s) 288, 517, 919
Ecl136II GAGCTC 2 cut(s) 319, 359
Eco130I CCWWGG 1 cut(s) 859
Eco24I GRGCYC 2 cut(s) 321, 361
Eco47I GGWCC 2 cut(s) 134, 606
Eco53kI GAGCTC 2 cut(s) 319, 359
Eco57I CTGAAG 3 cut(s) 52, 603, 979
Eco88I CYCGRG 1 cut(s) 101
EcoICRI GAGCTC 2 cut(s) 319, 359
EcoO109I RGGNCCY 1 cut(s) 480
EcoRII CCWGG 2 cut(s) 492, 1127
EcoT14I CCWWGG 1 cut(s) 859
EcoT22I ATGCAT 2 cut(s) 65, 1215
EcoT38I GRGCYC 2 cut(s) 321, 361
ErhI CCWWGG 1 cut(s) 859
FaeI CATG 5 cut(s) 508, 641, 863, 1092, 1213
FatI CATG 5 cut(s) 504, 637, 859, 1088, 1209
FbaI TGATCA 1 cut(s) 385
FblI GTMKAC 2 cut(s) 612, 1085
FokI GGATG 2 cut(s) 979, 1001
FriOI GRGCYC 2 cut(s) 321, 361
FspBI CTAG 3 cut(s) 440, 555, 782
GsuI CTGGAG 1 cut(s) 1150
HaeIII GGCC 1 cut(s) 482
HapII CCGG 1 cut(s) 88
Hin1II CATG 5 cut(s) 508, 641, 863, 1092, 1213
HincII GTYRAC 2 cut(s) 300, 1207
HindII GTYRAC 2 cut(s) 300, 1207
HinfI GANTC 7 cut(s) 509, 563, 747, 778, 787, 1168, 1183
HpaI GTTAAC 1 cut(s) 1207
HpaII CCGG 1 cut(s) 88
HphI GGTGA 1 cut(s) 1165
Hpy166II GTNNAC 5 cut(s) 300, 464, 613, 1086, 1207
Hpy8I GTNNAC 5 cut(s) 300, 464, 613, 1086, 1207
HpyAV CCTTC 3 cut(s) 167, 332, 405
HpyCH4III ACNGT 1 cut(s) 610
HpyCH4IV ACGT 4 cut(s) 81, 120, 271, 801
HpyCH4V TGCA 7 cut(s) 63, 374, 598, 842, 942, 1050, 1213
HpyF10VI GCNNNNNNNGC 1 cut(s) 551
HpyF3I CTNAG 4 cut(s) 315, 322, 476, 484
HpySE526I ACGT 4 cut(s) 81, 120, 271, 801
Hsp92II CATG 5 cut(s) 508, 641, 863, 1092, 1213
Kpn2I TCCGGA 1 cut(s) 87
Ksp22I TGATCA 1 cut(s) 385
KspAI GTTAAC 1 cut(s) 1207
Kzo9I GATC 4 cut(s) 28, 385, 658, 1073
LmnI GCTCC 1 cut(s) 90
LweI GCATC 2 cut(s) 72, 532
MabI ACCWGGT 1 cut(s) 492
MaeI CTAG 3 cut(s) 440, 555, 782
MaeII ACGT 4 cut(s) 81, 120, 271, 801
MaeIII GTNAC 3 cut(s) 310, 959, 1067
MalI GATC 4 cut(s) 30, 387, 660, 1075
MbiI CCGCTC 1 cut(s) 686
MboI GATC 4 cut(s) 28, 385, 658, 1073
MfeI CAATTG 1 cut(s) 843
MflI RGATCY 1 cut(s) 658
MhlI GDGCHC 3 cut(s) 87, 321, 361
MluCI AATT 8 cut(s) 261, 669, 707, 843, 932, 954, 1115, 1134
MlyI GAGTC 2 cut(s) 503, 1192
MmeI TCCRAC 3 cut(s) 247, 597, 784
MnlI CCTC 7 cut(s) 97, 155, 176, 205, 343, 493, 917
Mph1103I ATGCAT 2 cut(s) 65, 1215
MroI TCCGGA 1 cut(s) 87
MseI TTAA 2 cut(s) 705, 1206
MslI CAYNNNNRTG 3 cut(s) 18, 413, 896
MspI CCGG 1 cut(s) 88
MspR9I CCNGG 2 cut(s) 494, 1129
MunI CAATTG 1 cut(s) 843
Mva1269I GAATGC 1 cut(s) 1066
MvaI CCWGG 2 cut(s) 494, 1129
MvnI CGCG 1 cut(s) 1178
MwoI GCNNNNNNNGC 1 cut(s) 551
NcoI CCATGG 1 cut(s) 859
NdeII GATC 4 cut(s) 28, 385, 658, 1073
NlaIII CATG 5 cut(s) 508, 641, 863, 1092, 1213
NlaIV GGNNCC 1 cut(s) 833
NmuCI GTSAC 1 cut(s) 310
NsiI ATGCAT 2 cut(s) 65, 1215
NspI RCATGY 1 cut(s) 1213
NspV TTCGAA 1 cut(s) 711
PagI TCATGA 1 cut(s) 637
PcsI WCGNNNNNNNCGW 1 cut(s) 157
PctI GAATGC 1 cut(s) 1066
PfeI GAWTC 5 cut(s) 563, 747, 778, 787, 1168
PleI GAGTC 2 cut(s) 503, 1191
PpsI GAGTC 2 cut(s) 503, 1191
Ppu21I YACGTR 1 cut(s) 272
Psp124BI GAGCTC 2 cut(s) 321, 361
Psp1406I AACGTT 1 cut(s) 801
Psp6I CCWGG 2 cut(s) 492, 1127
PspGI CCWGG 2 cut(s) 492, 1127
PspN4I GGNNCC 1 cut(s) 833
PspPI GGNCC 3 cut(s) 134, 480, 606
PsuI RGATCY 1 cut(s) 658
RsaI GTAC 1 cut(s) 676
RsaNI GTAC 1 cut(s) 675
RseI CAYNNNNRTG 3 cut(s) 18, 413, 896
SacI GAGCTC 2 cut(s) 321, 361
SaqAI TTAA 2 cut(s) 705, 1206
Sau3AI GATC 4 cut(s) 28, 385, 658, 1073
Sau96I GGNCC 3 cut(s) 134, 480, 606
SchI GAGTC 2 cut(s) 503, 1192
ScrFI CCNGG 2 cut(s) 494, 1129
SduI GDGCHC 3 cut(s) 87, 321, 361
SexAI ACCWGGT 1 cut(s) 492
SfaNI GCATC 2 cut(s) 72, 532
SfuI TTCGAA 1 cut(s) 711
SinI GGWCC 2 cut(s) 134, 606
SmiMI CAYNNNNRTG 3 cut(s) 18, 413, 896
SmlI CTYRAG 1 cut(s) 1103
SmoI CTYRAG 1 cut(s) 1103
Sse9I AATT 8 cut(s) 261, 669, 707, 843, 932, 954, 1115, 1134
SsiI CCGC 4 cut(s) 429, 678, 684, 1176
SspMI CTAG 3 cut(s) 440, 555, 782
SstI GAGCTC 2 cut(s) 321, 361
StyD4I CCNGG 2 cut(s) 492, 1127
StyI CCWWGG 1 cut(s) 859
TaaI ACNGT 1 cut(s) 610
TaiI ACGT 4 cut(s) 84, 123, 274, 804
TaqI TCGA 6 cut(s) 42, 151, 411, 711, 745, 1076
TaqII GACCGA 1 cut(s) 591
TasI AATT 8 cut(s) 261, 669, 707, 843, 932, 954, 1115, 1134
TfiI GAWTC 5 cut(s) 563, 747, 778, 787, 1168
Tru1I TTAA 2 cut(s) 705, 1206
Tru9I TTAA 2 cut(s) 705, 1206
TscAI CASTG 1 cut(s) 319
TseFI GTSAC 1 cut(s) 310
Tsp45I GTSAC 1 cut(s) 310
TspDTI ATGAA 6 cut(s) 290, 351, 397, 626, 654, 990
TspRI CASTG 1 cut(s) 319
VpaK11BI GGWCC 2 cut(s) 134, 606
XapI RAATTY 5 cut(s) 261, 669, 707, 1115, 1134
XbaI TCTAGA 1 cut(s) 781
XceI RCATGY 1 cut(s) 1213
XmiI GTMKAC 2 cut(s) 612, 1085
XspI CTAG 3 cut(s) 440, 555, 782
Zsp2I ATGCAT 2 cut(s) 65, 1215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.