Rmu_sc0014620.1_g000017

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0014620.1
OG0000417
Physical Location & Seq
Forward (+)
79979 .. 80875
897 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0014620.1_g000017.1.cds

Sequence Viewer

Length: 897 bp
atgaagaaaactttgaaagagttgactgcagaagtcattaagctctcagatcaaaagaatgaaggcgaatttgatcaacgcgcgcgcgctttttatgcagaaccacttgatgatcatatttcctctgaagagttcatcaagatgatgatagttgacggctgcttcctaattcaactgtttcggaagtgttacgatccgaaactcagggcctttgatgacccagtgttcaacatggactgtatgtttcatttcctatgccatgacattttgctcctagaaaatcaattaccttggtttgttatccacagtttgtatagccttatcattgaagaataccctaatcaagccttcctctctactctcatccttgaagccttcagcatgctaccatcattgaagcaaagttgctcatcttataataagcatctccgcagaaacaagtgtttttgtgatgctgattatctgcacatacttgatctggtaagaaattccatagtaattccatcagggaccaaagcggctggaaaagaatctatgtccaaccctgaagaacatgaagttgactctgggaacaaacacgagagaaacaataaagttgttcatgaagctaccattgacccagattcacatcaaattcgtaccgcaaccgctctctcaaaggcagatattaaattcaaaagcgtagaaaaggagagcataatggacatccatttcgaaacgggcgggtgtttcaggaatgggattcttaagattccactgctaaacgttggaatgtcatcggaaacattattcaggaacctcattgcaatcgagcaatgctaccatggttattcaaacgaggttacatcttatgccatctttatggataacctcatctcttcaaaggaagatatgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

298

Amino Acids

34.25

Weight (kDa)

5.47

Isoelectric Point (pI)

47.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000417)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g32770 FvH4_4g02520 FvH4_4g02520 FvH4_4g02530 FvH4_4g02550 FvH4_4g17730 FvH4_4g17730
rosa_chinensis RchiOBHm_Chr1g0318801 RchiOBHm_Chr4g0390011 RchiOBHm_Chr4g0390031 RchiOBHm_Chr4g0390041 RchiOBHm_Chr4g0390061 RchiOBHm_Chr4g0390091 RchiOBHm_Chr4g0390101 RchiOBHm_Chr4g0390141 RchiOBHm_Chr4g0390181 RchiOBHm_Chr4g0390191 RchiOBHm_Chr4g0390201 RchiOBHm_Chr4g0390231 RchiOBHm_Chr4g0390241 RchiOBHm_Chr4g0390251 RchiOBHm_Chr4g0390661 RchiOBHm_Chr4g0390711 RchiOBHm_Chr4g0390741 RchiOBHm_Chr4g0390771 RchiOBHm_Chr4g0390801 RchiOBHm_Chr5g0058271
rosa_laevigata RLG00000008685 RLG00000009910 RLG00000009930 RLG00000009932 RLG00000009933 RLG00000009934 RLG00000009935 RLG00000009937 RLG00000009938 RLG00000009940 RLG00000035208 RLG00000035209
rosa_multiflora Rmu_co8281525.1_g000001 Rmu_co8464925.1_g000001 Rmu_sc0000171.1_g000023 Rmu_sc0000171.1_g000027 Rmu_sc0000367.1_g000061 Rmu_sc0000679.1_g000027 Rmu_sc0001380.1_g000026 Rmu_sc0001380.1_g000030 Rmu_sc0001471.1_g000010 Rmu_sc0003643.1_g000007 Rmu_sc0004336.1_g000002 Rmu_sc0004336.1_g000011 Rmu_sc0004336.1_g000012 Rmu_sc0005003.1_g000007 Rmu_sc0005003.1_g000012 Rmu_sc0005003.1_g000016 Rmu_sc0005003.1_g000022 Rmu_sc0008322.1_g000002 Rmu_sc0011197.1_g000004 Rmu_sc0014620.1_g000006 Rmu_sc0014620.1_g000017 Rmu_sc0018617.1_g000002
rosa_roxburghii Rroxscaffold_1G00022270 Rroxscaffold_5G00336180 Rroxscaffold_5G00336220 Rroxscaffold_5G00336240 Rroxscaffold_5G00336250 Rroxscaffold_5G00336290 Rroxscaffold_5G00336310 Rroxscaffold_5G00336350 Rroxscaffold_5G00336370 Rroxscaffold_5G00336670 Rroxscaffold_5G00336700 Rroxscaffold_5G00336710
rosa_rugosa Rorug01G0020300 Rorug03G0327700 Rorug03G0327800 Rorug03G0328000 Rorug03G0328100 Rorug03G0328300 Rorug03G0328600 Rorug03G0328600 Rorug03G0331700 Rorug03G0331800 Rorug05G0312900
rosa_samantha Rh4DG024700 Rh4DG024900 Rh4DG025000 Rh4DG025200 Rh4DG025500 Rh4DG025900 Rh4DG026200 Rh4DG030200 Rh5DG407000
rosa_wichuraiana Rw4G002360 Rw4G002410 Rw4G002420 Rw4G002450 Rw4G002480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 417
AccBSI CCGCTC 1 cut(s) 650
AccII CGCG 4 cut(s) 81, 83, 85, 87
AciI CCGC 5 cut(s) 430, 518, 642, 648, 723
AclI AACGTT 1 cut(s) 765
AclWI GGATC 1 cut(s) 188
AcsI RAATTY 4 cut(s) 68, 487, 633, 671
AcuI CTGAAG 3 cut(s) 147, 361, 567
AfaI GTAC 1 cut(s) 640
AflII CTTAAG 1 cut(s) 746
AgsI TTSAA 9 cut(s) 16, 173, 229, 329, 371, 397, 676, 834, 882
AluBI AGCT 2 cut(s) 43, 608
AluI AGCT 2 cut(s) 43, 608
AlwI GGATC 1 cut(s) 188
AoxI GGCC 1 cut(s) 207
ApeKI GCWGC 1 cut(s) 159
ApoI RAATTY 4 cut(s) 68, 487, 633, 671
ArsI GACNNNNNNTTYG 2 cut(s) 695, 727
AspLEI GCGC 4 cut(s) 83, 85, 87, 89
AspS9I GGNCC 2 cut(s) 207, 510
AsuII TTCGAA 1 cut(s) 714
AvaII GGWCC 1 cut(s) 510
BauI CACGAG 1 cut(s) 578
BbvI GCAGC 1 cut(s) 146
BccI CCATC 3 cut(s) 397, 511, 863
BceAI ACGGC 1 cut(s) 172
BclI TGATCA 2 cut(s) 73, 112
BfaI CTAG 1 cut(s) 275
BfmI CTRYAG 1 cut(s) 27
BfrI CTTAAG 1 cut(s) 746
BisI GCNGC 2 cut(s) 160, 519
BlsI GCNGC 2 cut(s) 161, 520
Bme18I GGWCC 1 cut(s) 510
BmgT120I GGNCC 2 cut(s) 207, 510
BmiI GGNNCC 2 cut(s) 511, 797
BmrI ACTGGG 1 cut(s) 215
BmsI GCATC 2 cut(s) 433, 442
BmuI ACTGGG 1 cut(s) 215
Bpu14I TTCGAA 1 cut(s) 714
BsaBI GATNNNNATC 1 cut(s) 627
BsaJI CCNNGG 2 cut(s) 290, 823
Bse1I ACTGG 1 cut(s) 221
Bse3DI GCAATG 2 cut(s) 801, 821
Bse8I GATNNNNATC 1 cut(s) 627
BseDI CCNNGG 2 cut(s) 290, 823
BseGI GGATG 2 cut(s) 363, 705
BseJI GATNNNNATC 1 cut(s) 627
BseMI GCAATG 2 cut(s) 801, 821
BseMII CTCAG 2 cut(s) 60, 217
BseNI ACTGG 1 cut(s) 221
BsePI GCGCGC 3 cut(s) 81, 83, 85
BseXI GCAGC 1 cut(s) 146
BsgI GTGCAG 1 cut(s) 449
Bsh1236I CGCG 4 cut(s) 81, 83, 85, 87
BshFI GGCC 1 cut(s) 209
BslFI GGGAC 1 cut(s) 523
BsmFI GGGAC 1 cut(s) 523
BsnI GGCC 1 cut(s) 209
Bsp119I TTCGAA 1 cut(s) 714
Bsp143I GATC 5 cut(s) 49, 73, 112, 193, 475
Bsp19I CCATGG 1 cut(s) 823
BspACI CCGC 5 cut(s) 430, 518, 642, 648, 723
BspANI GGCC 1 cut(s) 209
BspCNI CTCAG 2 cut(s) 59, 216
BspFNI CGCG 4 cut(s) 81, 83, 85, 87
BspHI TCATGA 1 cut(s) 601
BspLI GGNNCC 2 cut(s) 511, 797
BspMAI CTGCAG 1 cut(s) 31
BspPI GGATC 1 cut(s) 188
BspT104I TTCGAA 1 cut(s) 714
BspTI CTTAAG 1 cut(s) 746
BsrBI CCGCTC 1 cut(s) 650
BsrDI GCAATG 2 cut(s) 801, 821
BsrI ACTGG 1 cut(s) 221
BssECI CCNNGG 2 cut(s) 290, 823
BssHII GCGCGC 3 cut(s) 81, 83, 85
BssMI GATC 5 cut(s) 49, 73, 112, 193, 475
BssSI CACGAG 1 cut(s) 578
BssT1I CCWWGG 2 cut(s) 290, 823
Bst2BI CACGAG 1 cut(s) 578
Bst4CI ACNGT 3 cut(s) 177, 239, 308
Bst6I CTCTTC 2 cut(s) 123, 883
BstAFI CTTAAG 1 cut(s) 746
BstBI TTCGAA 1 cut(s) 714
BstC8I GCNNGC 4 cut(s) 83, 85, 87, 383
BstDEI CTNAG 2 cut(s) 46, 203
BstDSI CCRYGG 1 cut(s) 823
BstF5I GGATG 2 cut(s) 363, 705
BstFNI CGCG 4 cut(s) 81, 83, 85, 87
BstHHI GCGC 4 cut(s) 83, 85, 87, 89
BstKTI GATC 5 cut(s) 52, 76, 115, 196, 478
BstMBI GATC 5 cut(s) 49, 73, 112, 193, 475
BstMWI GCNNNNNNNGC 1 cut(s) 95
BstNSI RCATGY 1 cut(s) 385
BstSFI CTRYAG 1 cut(s) 27
BstUI CGCG 4 cut(s) 81, 83, 85, 87
BstV1I GCAGC 1 cut(s) 146
BstXI CCANNNNNNTGG 1 cut(s) 862
BsuRI GGCC 1 cut(s) 209
BtgI CCRYGG 1 cut(s) 823
BtsCI GGATG 2 cut(s) 363, 705
BtsI GCAGTG 1 cut(s) 755
BtsIMutI CAGTG 2 cut(s) 228, 755
Cac8I GCNNGC 4 cut(s) 83, 85, 87, 383
CciI TCATGA 1 cut(s) 601
CfoI GCGC 4 cut(s) 83, 85, 87, 89
Cfr13I GGNCC 2 cut(s) 207, 510
Csp6I GTAC 1 cut(s) 639
CviAII CATG 6 cut(s) 232, 260, 382, 554, 602, 824
CviJI RGCY 8 cut(s) 43, 159, 209, 318, 347, 374, 521, 608
CviKI_1 RGCY 8 cut(s) 43, 159, 209, 318, 347, 374, 521, 608
CviQI GTAC 1 cut(s) 639
DdeI CTNAG 2 cut(s) 46, 203
DpnI GATC 5 cut(s) 51, 75, 114, 195, 477
DpnII GATC 5 cut(s) 49, 73, 112, 193, 475
Eam1104I CTCTTC 2 cut(s) 123, 883
EarI CTCTTC 2 cut(s) 123, 883
Eco130I CCWWGG 2 cut(s) 290, 823
Eco47I GGWCC 1 cut(s) 510
Eco57I CTGAAG 3 cut(s) 147, 361, 567
EcoO109I RGGNCCY 1 cut(s) 207
EcoT14I CCWWGG 2 cut(s) 290, 823
ErhI CCWWGG 2 cut(s) 290, 823
FaeI CATG 6 cut(s) 235, 263, 385, 557, 605, 827
FaqI GGGAC 1 cut(s) 523
FatI CATG 6 cut(s) 231, 259, 381, 553, 601, 823
FauI CCCGC 1 cut(s) 716
FbaI TGATCA 2 cut(s) 73, 112
Fnu4HI GCNGC 2 cut(s) 160, 519
FokI GGATG 2 cut(s) 350, 692
Fsp4HI GCNGC 2 cut(s) 160, 519
FspBI CTAG 1 cut(s) 275
GlaI GCGC 4 cut(s) 82, 84, 86, 88
GluI GCNGC 2 cut(s) 160, 519
HaeIII GGCC 1 cut(s) 209
HhaI GCGC 4 cut(s) 83, 85, 87, 89
Hin1II CATG 6 cut(s) 235, 263, 385, 557, 605, 827
Hin6I GCGC 4 cut(s) 81, 83, 85, 87
HinP1I GCGC 4 cut(s) 81, 83, 85, 87
HincII GTYRAC 3 cut(s) 24, 154, 562
HindII GTYRAC 3 cut(s) 24, 154, 562
HinfI GANTC 5 cut(s) 530, 563, 623, 742, 751
Hpy166II GTNNAC 3 cut(s) 24, 154, 562
Hpy188I TCNGA 5 cut(s) 49, 127, 183, 198, 781
Hpy188III TCNNGA 4 cut(s) 139, 602, 733, 793
Hpy8I GTNNAC 3 cut(s) 24, 154, 562
HpyAV CCTTC 3 cut(s) 56, 358, 385
HpyCH4III ACNGT 3 cut(s) 177, 239, 308
HpyCH4IV ACGT 1 cut(s) 765
HpyCH4V TGCA 4 cut(s) 29, 98, 466, 806
HpyF10VI GCNNNNNNNGC 1 cut(s) 95
HpyF3I CTNAG 2 cut(s) 46, 203
HpySE526I ACGT 1 cut(s) 765
Hsp92II CATG 6 cut(s) 235, 263, 385, 557, 605, 827
HspAI GCGC 4 cut(s) 81, 83, 85, 87
Ksp22I TGATCA 2 cut(s) 73, 112
Kzo9I GATC 5 cut(s) 49, 73, 112, 193, 475
LmnI GCTCC 1 cut(s) 276
Lsp1109I GCAGC 1 cut(s) 146
LweI GCATC 2 cut(s) 433, 442
MaeI CTAG 1 cut(s) 275
MaeII ACGT 1 cut(s) 765
MaeIII GTNAC 2 cut(s) 188, 841
MalI GATC 5 cut(s) 51, 75, 114, 195, 477
MauBI CGCGCGCG 2 cut(s) 81, 83
MbiI CCGCTC 1 cut(s) 650
MboI GATC 5 cut(s) 49, 73, 112, 193, 475
MboII GAAGA 5 cut(s) 16, 140, 341, 560, 870
MluCI AATT 7 cut(s) 68, 168, 284, 487, 498, 633, 671
MlyI GAGTC 1 cut(s) 557
MmeI TCCRAC 2 cut(s) 564, 748
MnlI CCTC 5 cut(s) 133, 362, 809, 832, 881
MseI TTAA 3 cut(s) 39, 669, 747
MslI CAYNNNNRTG 2 cut(s) 140, 860
MspCI CTTAAG 1 cut(s) 746
MvnI CGCG 4 cut(s) 81, 83, 85, 87
MwoI GCNNNNNNNGC 1 cut(s) 95
NcoI CCATGG 1 cut(s) 823
NdeII GATC 5 cut(s) 49, 73, 112, 193, 475
NlaIII CATG 6 cut(s) 235, 263, 385, 557, 605, 827
NlaIV GGNNCC 2 cut(s) 511, 797
NspI RCATGY 1 cut(s) 385
NspV TTCGAA 1 cut(s) 714
PaeI GCATGC 1 cut(s) 385
PagI TCATGA 1 cut(s) 601
PauI GCGCGC 3 cut(s) 81, 83, 85
PfeI GAWTC 4 cut(s) 530, 623, 742, 751
PkrI GCNGC 2 cut(s) 161, 520
PleI GAGTC 1 cut(s) 557
PpsI GAGTC 1 cut(s) 557
PsiI TTATAA 1 cut(s) 417
Psp1406I AACGTT 1 cut(s) 765
PspN4I GGNNCC 2 cut(s) 511, 797
PspPI GGNCC 2 cut(s) 207, 510
PstI CTGCAG 1 cut(s) 31
PteI GCGCGC 3 cut(s) 81, 83, 85
RsaI GTAC 1 cut(s) 640
RsaNI GTAC 1 cut(s) 639
RseI CAYNNNNRTG 2 cut(s) 140, 860
SaqAI TTAA 3 cut(s) 39, 669, 747
SatI GCNGC 2 cut(s) 160, 519
Sau3AI GATC 5 cut(s) 49, 73, 112, 193, 475
Sau96I GGNCC 2 cut(s) 207, 510
SchI GAGTC 1 cut(s) 557
SetI ASST 7 cut(s) 45, 292, 610, 768, 801, 843, 873
SfaNI GCATC 2 cut(s) 433, 442
SfcI CTRYAG 1 cut(s) 27
SfuI TTCGAA 1 cut(s) 714
SinI GGWCC 1 cut(s) 510
SmiMI CAYNNNNRTG 2 cut(s) 140, 860
SmlI CTYRAG 1 cut(s) 746
SmoI CTYRAG 1 cut(s) 746
SphI GCATGC 1 cut(s) 385
Sse9I AATT 7 cut(s) 68, 168, 284, 487, 498, 633, 671
SsiI CCGC 5 cut(s) 430, 518, 642, 648, 723
SspMI CTAG 1 cut(s) 275
StyI CCWWGG 2 cut(s) 290, 823
TaaI ACNGT 3 cut(s) 177, 239, 308
TaiI ACGT 1 cut(s) 768
TaqI TCGA 2 cut(s) 714, 810
TasI AATT 7 cut(s) 68, 168, 284, 487, 498, 633, 671
TauI GCSGC 1 cut(s) 521
TfiI GAWTC 4 cut(s) 530, 623, 742, 751
Tru1I TTAA 3 cut(s) 39, 669, 747
Tru9I TTAA 3 cut(s) 39, 669, 747
TscAI CASTG 2 cut(s) 228, 762
TseI GCWGC 1 cut(s) 159
TspDTI ATGAA 7 cut(s) 17, 75, 124, 236, 570, 590, 618
TspRI CASTG 2 cut(s) 228, 762
Vha464I CTTAAG 1 cut(s) 746
VpaK11BI GGWCC 1 cut(s) 510
XapI RAATTY 4 cut(s) 68, 487, 633, 671
XceI RCATGY 1 cut(s) 385
XspI CTAG 1 cut(s) 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.