RchiOBHm_Chr4g0390191

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000417
Physical Location & Seq
Reverse (-)
5488894 .. 5489909
1016 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36325

Sequence Viewer

Length: 852 bp
ATGTCTGTAAATCATAAGAGTGGTAAAGATCATTTAGTTATCGATATTATTGACAAGAAATGCATCTTCAGAGTTCCTAACGTGCTCCGGAGACAAAACCCCGAGGCATATACACCTGACGTTGTTGCAATCGGACCTTTACATCATTATCGAGAAAAGCGAGGCAAGGAAGAAGGTAAAGGAGGCAAGGAAGACAAAGAAGACAAAGGCGAGGAAGATTTCCAACTCCTGAAACGAGGGAAAAAAAGCTATTTGAATGAAATTCTCGCACGTATGAAGAATATAACTTTGGAAGAGTTGACCACAAAAGTTACTGAGCTCTCAGATAAGAAGAATGAAGGTGGGTTTGAGGAACGAGCTCGCAACTTTTATGCAGAACCACTTGATCATATTCCTTCCAAAGACTTCATCGAGATGATGATAGTTGATGGTTGCTTCATAGTTCAACTATTTCGGAAGTGTAAACATTCCAATCTCAGGGCCTCAGATGACCTGGTGTTCAACATGGACTGTATGTTTCATTTCCTATGCCATGACATTTTGCTCCTAGAGAATCAACTACCTTGGTTTGTTATCCACAGTTTGTATAGCCTTACCCTTGAAATATACCCTGATGAAGCCTCTCTCTCTGTTCTCATCCTTAAAGCCTTCAGCATACTACCATCACTGAAGCAAAGTTGCTCATCTTATAATAAGCATCTCGGCAAGATCAAGTGTCATTGTGATGCTGATTATCTGCACATACTTGATCTGGTAAGAGCTTCCATAGTTATTCCATTGAAGACCATAGATGCGAGAGTAGCTAGAAAAGAATCTATGTCCGACCGAGCTGAAGAACATCAAGTGCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

283

Amino Acids

32.68

Weight (kDa)

6.7

Isoelectric Point (pI)

46.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 22 - 271 1.6e-46 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000417)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g32770 FvH4_4g02520 FvH4_4g02520 FvH4_4g02530 FvH4_4g02550 FvH4_4g17730 FvH4_4g17730
rosa_chinensis RchiOBHm_Chr1g0318801 RchiOBHm_Chr4g0390011 RchiOBHm_Chr4g0390031 RchiOBHm_Chr4g0390041 RchiOBHm_Chr4g0390061 RchiOBHm_Chr4g0390091 RchiOBHm_Chr4g0390101 RchiOBHm_Chr4g0390141 RchiOBHm_Chr4g0390181 RchiOBHm_Chr4g0390191 RchiOBHm_Chr4g0390201 RchiOBHm_Chr4g0390231 RchiOBHm_Chr4g0390241 RchiOBHm_Chr4g0390251 RchiOBHm_Chr4g0390661 RchiOBHm_Chr4g0390711 RchiOBHm_Chr4g0390741 RchiOBHm_Chr4g0390771 RchiOBHm_Chr4g0390801 RchiOBHm_Chr5g0058271
rosa_laevigata RLG00000008685 RLG00000009910 RLG00000009930 RLG00000009932 RLG00000009933 RLG00000009934 RLG00000009935 RLG00000009937 RLG00000009938 RLG00000009940 RLG00000035208 RLG00000035209
rosa_multiflora Rmu_co8281525.1_g000001 Rmu_co8464925.1_g000001 Rmu_sc0000171.1_g000023 Rmu_sc0000171.1_g000027 Rmu_sc0000367.1_g000061 Rmu_sc0000679.1_g000027 Rmu_sc0001380.1_g000026 Rmu_sc0001380.1_g000030 Rmu_sc0001471.1_g000010 Rmu_sc0003643.1_g000007 Rmu_sc0004336.1_g000002 Rmu_sc0004336.1_g000011 Rmu_sc0004336.1_g000012 Rmu_sc0005003.1_g000007 Rmu_sc0005003.1_g000012 Rmu_sc0005003.1_g000016 Rmu_sc0005003.1_g000022 Rmu_sc0008322.1_g000002 Rmu_sc0011197.1_g000004 Rmu_sc0014620.1_g000006 Rmu_sc0014620.1_g000017 Rmu_sc0018617.1_g000002
rosa_roxburghii Rroxscaffold_1G00022270 Rroxscaffold_5G00336180 Rroxscaffold_5G00336220 Rroxscaffold_5G00336240 Rroxscaffold_5G00336250 Rroxscaffold_5G00336290 Rroxscaffold_5G00336310 Rroxscaffold_5G00336350 Rroxscaffold_5G00336370 Rroxscaffold_5G00336670 Rroxscaffold_5G00336700 Rroxscaffold_5G00336710
rosa_rugosa Rorug01G0020300 Rorug03G0327700 Rorug03G0327800 Rorug03G0328000 Rorug03G0328100 Rorug03G0328300 Rorug03G0328600 Rorug03G0328600 Rorug03G0331700 Rorug03G0331800 Rorug05G0312900
rosa_samantha Rh4DG024700 Rh4DG024900 Rh4DG025000 Rh4DG025200 Rh4DG025500 Rh4DG025900 Rh4DG026200 Rh4DG030200 Rh5DG407000
rosa_wichuraiana Rw4G002360 Rw4G002410 Rw4G002420 Rw4G002450 Rw4G002480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 690
AccIII TCCGGA 1 cut(s) 87
AcsI RAATTY 1 cut(s) 261
AcuI CTGAAG 4 cut(s) 52, 634, 689, 852
AfiI CCNNNNNNNGG 1 cut(s) 477
AgsI TTSAA 5 cut(s) 256, 446, 502, 602, 781
AjnI CCWGG 1 cut(s) 492
AjuI GAANNNNNNNTTGG 2 cut(s) 272, 304
AluBI AGCT 6 cut(s) 249, 319, 359, 761, 803, 830
AluI AGCT 6 cut(s) 249, 319, 359, 761, 803, 830
Alw21I GWGCWC 3 cut(s) 87, 321, 361
Alw26I GTCTC 1 cut(s) 85
Ama87I CYCGRG 1 cut(s) 101
Aor13HI TCCGGA 1 cut(s) 87
AoxI GGCC 1 cut(s) 480
ApoI RAATTY 1 cut(s) 261
AspS9I GGNCC 2 cut(s) 134, 480
AvaI CYCGRG 1 cut(s) 101
AvaII GGWCC 1 cut(s) 134
BanII GRGCYC 2 cut(s) 321, 361
BbsI GAAGAC 3 cut(s) 198, 207, 788
Bbv12I GWGCWC 3 cut(s) 87, 321, 361
BccI CCATC 2 cut(s) 422, 670
BciT130I CCWGG 1 cut(s) 494
BclI TGATCA 1 cut(s) 385
BcoDI GTCTC 1 cut(s) 85
BfaI CTAG 2 cut(s) 548, 804
Bme1390I CCNGG 1 cut(s) 494
Bme18I GGWCC 1 cut(s) 134
BmeT110I CYCGRG 1 cut(s) 101
BmgT120I GGNCC 2 cut(s) 134, 480
BmrFI CCNGG 1 cut(s) 494
BmsI GCATC 4 cut(s) 72, 706, 715, 781
BpiI GAAGAC 3 cut(s) 198, 207, 788
Bsa29I ATCGAT 1 cut(s) 42
BsaAI YACGTR 1 cut(s) 272
BsaJI CCNNGG 2 cut(s) 102, 563
BsaWI WCCGGW 1 cut(s) 87
Bsc4I CCNNNNNNNGG 1 cut(s) 477
BseAI TCCGGA 1 cut(s) 87
BseBI CCWGG 1 cut(s) 494
BseCI ATCGAT 1 cut(s) 42
BseDI CCNNGG 2 cut(s) 102, 563
BseGI GGATG 1 cut(s) 636
BseLI CCNNNNNNNGG 1 cut(s) 477
BseMII CTCAG 4 cut(s) 306, 336, 490, 498
BsgI GTGCAG 1 cut(s) 722
Bsh1285I CGRYCG 1 cut(s) 826
BshFI GGCC 1 cut(s) 482
BshVI ATCGAT 1 cut(s) 42
BsiEI CGRYCG 1 cut(s) 826
BsiHKAI GWGCWC 3 cut(s) 87, 321, 361
BsiHKCI CYCGRG 1 cut(s) 101
BsiSI CCGG 1 cut(s) 88
BslI CCNNNNNNNGG 1 cut(s) 477
BsmAI GTCTC 1 cut(s) 85
BsnI GGCC 1 cut(s) 482
BsoBI CYCGRG 1 cut(s) 101
Bsp1286I GDGCHC 3 cut(s) 87, 321, 361
Bsp13I TCCGGA 1 cut(s) 87
Bsp143I GATC 4 cut(s) 28, 385, 708, 748
BspANI GGCC 1 cut(s) 482
BspCNI CTCAG 4 cut(s) 307, 335, 489, 497
BspDI ATCGAT 1 cut(s) 42
BspEI TCCGGA 1 cut(s) 87
BssECI CCNNGG 2 cut(s) 102, 563
BssMI GATC 4 cut(s) 28, 385, 708, 748
BssT1I CCWWGG 1 cut(s) 563
Bst2UI CCWGG 1 cut(s) 494
Bst4CI ACNGT 2 cut(s) 512, 581
Bst6I CTCTTC 1 cut(s) 288
BstBAI YACGTR 1 cut(s) 272
BstC8I GCNNGC 1 cut(s) 361
BstDEI CTNAG 4 cut(s) 315, 322, 476, 484
BstF5I GGATG 1 cut(s) 636
BstKTI GATC 4 cut(s) 31, 388, 711, 751
BstMAI GTCTC 1 cut(s) 85
BstMBI GATC 4 cut(s) 28, 385, 708, 748
BstMCI CGRYCG 1 cut(s) 826
BstMWI GCNNNNNNNGC 1 cut(s) 800
BstNI CCWGG 1 cut(s) 494
BstSCI CCNGG 1 cut(s) 492
BstV2I GAAGAC 3 cut(s) 198, 207, 788
Bsu15I ATCGAT 1 cut(s) 42
BsuRI GGCC 1 cut(s) 482
BsuTUI ATCGAT 1 cut(s) 42
BtsCI GGATG 1 cut(s) 636
BtsIMutI CAGTG 1 cut(s) 665
Cac8I GCNNGC 1 cut(s) 361
Cfr13I GGNCC 2 cut(s) 134, 480
ClaI ATCGAT 1 cut(s) 42
CsiI ACCWGGT 1 cut(s) 492
CviAII CATG 2 cut(s) 505, 533
DdeI CTNAG 4 cut(s) 315, 322, 476, 484
DpnI GATC 4 cut(s) 30, 387, 710, 750
DpnII GATC 4 cut(s) 28, 385, 708, 748
Eam1104I CTCTTC 1 cut(s) 288
EarI CTCTTC 1 cut(s) 288
Ecl136II GAGCTC 2 cut(s) 319, 359
Eco130I CCWWGG 1 cut(s) 563
Eco24I GRGCYC 2 cut(s) 321, 361
Eco47I GGWCC 1 cut(s) 134
Eco53kI GAGCTC 2 cut(s) 319, 359
Eco57I CTGAAG 4 cut(s) 52, 634, 689, 852
Eco88I CYCGRG 1 cut(s) 101
EcoICRI GAGCTC 2 cut(s) 319, 359
EcoO109I RGGNCCY 1 cut(s) 480
EcoRII CCWGG 1 cut(s) 492
EcoT14I CCWWGG 1 cut(s) 563
EcoT22I ATGCAT 1 cut(s) 65
EcoT38I GRGCYC 2 cut(s) 321, 361
ErhI CCWWGG 1 cut(s) 563
FaeI CATG 2 cut(s) 508, 536
FatI CATG 2 cut(s) 504, 532
FbaI TGATCA 1 cut(s) 385
FokI GGATG 1 cut(s) 623
FriOI GRGCYC 2 cut(s) 321, 361
FspBI CTAG 2 cut(s) 548, 804
HaeIII GGCC 1 cut(s) 482
HapII CCGG 1 cut(s) 88
Hin1II CATG 2 cut(s) 508, 536
HincII GTYRAC 1 cut(s) 300
HindII GTYRAC 1 cut(s) 300
HinfI GANTC 2 cut(s) 553, 812
HpaII CCGG 1 cut(s) 88
Hpy166II GTNNAC 2 cut(s) 300, 464
Hpy188I TCNGA 6 cut(s) 71, 134, 325, 456, 487, 823
Hpy188III TCNNGA 4 cut(s) 88, 152, 229, 412
Hpy8I GTNNAC 2 cut(s) 300, 464
HpyAV CCTTC 4 cut(s) 167, 332, 405, 658
HpyCH4III ACNGT 2 cut(s) 512, 581
HpyCH4IV ACGT 3 cut(s) 81, 120, 271
HpyCH4V TGCA 5 cut(s) 63, 128, 374, 739, 847
HpyF10VI GCNNNNNNNGC 1 cut(s) 800
HpyF3I CTNAG 4 cut(s) 315, 322, 476, 484
HpySE526I ACGT 3 cut(s) 81, 120, 271
Hsp92II CATG 2 cut(s) 508, 536
Kpn2I TCCGGA 1 cut(s) 87
Ksp22I TGATCA 1 cut(s) 385
Kzo9I GATC 4 cut(s) 28, 385, 708, 748
LmnI GCTCC 2 cut(s) 90, 549
LpnPI CCDG 8 cut(s) 101, 129, 242, 463, 479, 506, 624, 737
LweI GCATC 4 cut(s) 72, 706, 715, 781
MabI ACCWGGT 1 cut(s) 492
MaeI CTAG 2 cut(s) 548, 804
MaeII ACGT 3 cut(s) 81, 120, 271
MaeIII GTNAC 1 cut(s) 310
MalI GATC 4 cut(s) 30, 387, 710, 750
MboI GATC 4 cut(s) 28, 385, 708, 748
MhlI GDGCHC 3 cut(s) 87, 321, 361
MluCI AATT 1 cut(s) 261
MmeI TCCRAC 2 cut(s) 247, 846
MnlI CCTC 8 cut(s) 97, 155, 176, 205, 230, 343, 493, 631
Mph1103I ATGCAT 1 cut(s) 65
MroI TCCGGA 1 cut(s) 87
MseI TTAA 2 cut(s) 642, 850
MslI CAYNNNNRTG 3 cut(s) 18, 413, 723
MspI CCGG 1 cut(s) 88
MspR9I CCNGG 1 cut(s) 494
MvaI CCWGG 1 cut(s) 494
MwoI GCNNNNNNNGC 1 cut(s) 800
NdeII GATC 4 cut(s) 28, 385, 708, 748
NlaIII CATG 2 cut(s) 508, 536
NmeAIII GCCGAG 1 cut(s) 681
NsiI ATGCAT 1 cut(s) 65
PcsI WCGNNNNNNNCGW 1 cut(s) 157
PfeI GAWTC 2 cut(s) 553, 812
Ppu21I YACGTR 1 cut(s) 272
PsiI TTATAA 1 cut(s) 690
Psp124BI GAGCTC 2 cut(s) 321, 361
Psp6I CCWGG 1 cut(s) 492
PspGI CCWGG 1 cut(s) 492
PspPI GGNCC 2 cut(s) 134, 480
RseI CAYNNNNRTG 3 cut(s) 18, 413, 723
SacI GAGCTC 2 cut(s) 321, 361
SaqAI TTAA 2 cut(s) 642, 850
Sau3AI GATC 4 cut(s) 28, 385, 708, 748
Sau96I GGNCC 2 cut(s) 134, 480
ScrFI CCNGG 1 cut(s) 494
SduI GDGCHC 3 cut(s) 87, 321, 361
SexAI ACCWGGT 1 cut(s) 492
SfaNI GCATC 4 cut(s) 72, 706, 715, 781
SinI GGWCC 1 cut(s) 134
SmiMI CAYNNNNRTG 3 cut(s) 18, 413, 723
Sse9I AATT 1 cut(s) 261
SspMI CTAG 2 cut(s) 548, 804
SstI GAGCTC 2 cut(s) 321, 361
StyD4I CCNGG 1 cut(s) 492
StyI CCWWGG 1 cut(s) 563
TaaI ACNGT 2 cut(s) 512, 581
TaiI ACGT 3 cut(s) 84, 123, 274
TaqI TCGA 3 cut(s) 42, 151, 411
TaqII GACCGA 1 cut(s) 840
TasI AATT 1 cut(s) 261
TfiI GAWTC 2 cut(s) 553, 812
Tru1I TTAA 2 cut(s) 642, 850
Tru9I TTAA 2 cut(s) 642, 850
TscAI CASTG 1 cut(s) 672
TspDTI ATGAA 7 cut(s) 273, 290, 351, 397, 427, 509, 630
TspRI CASTG 1 cut(s) 672
VpaK11BI GGWCC 1 cut(s) 134
XapI RAATTY 1 cut(s) 261
XspI CTAG 2 cut(s) 548, 804
Zsp2I ATGCAT 1 cut(s) 65
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.