RchiOBHm_Chr4g0390241

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000417
Physical Location & Seq
Reverse (-)
5561049 .. 5562203
1155 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36330

Sequence Viewer

Length: 1155 bp
ATGGAACGAGTGAAAGAGAGCTATTTAAATGATGTGCTTGAAGGCATGATGATTCCAACCGAAACGTTGATGGCAAAGGTTATTGATCTTTCAGATCAAAAGAATGAAGGCACTATTGGGTTTGAGCAACGTGCCCGTGGCTTCTATGCAGAGCCACTACTTGATATTCCCTCAGAAGAATTCATCAAGATGATGATAGTTGACGGTTGCTTCCTCGTTCAACTATTTCGGAAGTGTAATGATCCGACACTCAGGGATATCGAAGATCCGGTATTCAACATGGATTGCATGTTCCATTTCCTATGTCATGACCTTTTGCTCCTAGAAAATCAACTACCTTGGTTTGTTCTTGAGAGTTTATACAGCCTTATCCTTGGAAATGGCTGCAGTCATCAACCCTCCCTCGCTTTTGTCATCCTCGAAGCCTTCATCACATTACCATCACTAAAGCGTAGTTGCAATTCCTATAAACAACATCTTAGTTCATGTCACGGTAACAATGTTGATGATGTTTTGCACATACTTGATCTGGTAAGATCTTCGATTGTTATTCCATCAAAGGTCAAAGCCCGGAAAGAAAACAAAGTTCACGAGGCTATGTTTGACCCAGAGATACATGAAATGCATACGGTGACGGCTCTCTCAAAGGCCGGGATCAAATTCAAAGGTGTCAAAAGTGAAAGCATGATGGACATACAATTCAAAAACGGAGTTTTTACTTTTCCACAGCTATACATTGGTACGCTGGCCGACTCATTGTTCAGGAACCTCATTGCTTTTGAGCAGTGCTACAATGGTTATTCAAACGAAATTACATCTTATGCCATTTTAATGGATAACCTTATCTCTTCCAAGGAAGACATGGAATTACTTTGCAAGGCAAAAGTAATAGGTAACTGGCTAAGCGAGGAAGATGGTTGCAAGTTCTTCAACAACCTTTACAAGGGCATCCCGCACAACAAGTTCTACTATGTCCATCTCTGCAAGCAAGTCAACGAGCATTACAGAATCAGATGGCATAAATATCTGGCTTCGTTGAAGATTGAAAAGTTCTCTAACCCCTGGAAAATTATTGCTTTCTTCGTAGCTATTGTCCTTCTGGGTCTTAGCATATGGACCTCCACGAATAACATTCGGACCTTCATGCAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

384

Amino Acids

44.35

Weight (kDa)

6.24

Isoelectric Point (pI)

43.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 1 - 367 3.5e-89 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000417)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g32770 FvH4_4g02520 FvH4_4g02520 FvH4_4g02530 FvH4_4g02550 FvH4_4g17730 FvH4_4g17730
rosa_chinensis RchiOBHm_Chr1g0318801 RchiOBHm_Chr4g0390011 RchiOBHm_Chr4g0390031 RchiOBHm_Chr4g0390041 RchiOBHm_Chr4g0390061 RchiOBHm_Chr4g0390091 RchiOBHm_Chr4g0390101 RchiOBHm_Chr4g0390141 RchiOBHm_Chr4g0390181 RchiOBHm_Chr4g0390191 RchiOBHm_Chr4g0390201 RchiOBHm_Chr4g0390231 RchiOBHm_Chr4g0390241 RchiOBHm_Chr4g0390251 RchiOBHm_Chr4g0390661 RchiOBHm_Chr4g0390711 RchiOBHm_Chr4g0390741 RchiOBHm_Chr4g0390771 RchiOBHm_Chr4g0390801 RchiOBHm_Chr5g0058271
rosa_laevigata RLG00000008685 RLG00000009910 RLG00000009930 RLG00000009932 RLG00000009933 RLG00000009934 RLG00000009935 RLG00000009937 RLG00000009938 RLG00000009940 RLG00000035208 RLG00000035209
rosa_multiflora Rmu_co8281525.1_g000001 Rmu_co8464925.1_g000001 Rmu_sc0000171.1_g000023 Rmu_sc0000171.1_g000027 Rmu_sc0000367.1_g000061 Rmu_sc0000679.1_g000027 Rmu_sc0001380.1_g000026 Rmu_sc0001380.1_g000030 Rmu_sc0001471.1_g000010 Rmu_sc0003643.1_g000007 Rmu_sc0004336.1_g000002 Rmu_sc0004336.1_g000011 Rmu_sc0004336.1_g000012 Rmu_sc0005003.1_g000007 Rmu_sc0005003.1_g000012 Rmu_sc0005003.1_g000016 Rmu_sc0005003.1_g000022 Rmu_sc0008322.1_g000002 Rmu_sc0011197.1_g000004 Rmu_sc0014620.1_g000006 Rmu_sc0014620.1_g000017 Rmu_sc0018617.1_g000002
rosa_roxburghii Rroxscaffold_1G00022270 Rroxscaffold_5G00336180 Rroxscaffold_5G00336220 Rroxscaffold_5G00336240 Rroxscaffold_5G00336250 Rroxscaffold_5G00336290 Rroxscaffold_5G00336310 Rroxscaffold_5G00336350 Rroxscaffold_5G00336370 Rroxscaffold_5G00336670 Rroxscaffold_5G00336700 Rroxscaffold_5G00336710
rosa_rugosa Rorug01G0020300 Rorug03G0327700 Rorug03G0327800 Rorug03G0328000 Rorug03G0328100 Rorug03G0328300 Rorug03G0328600 Rorug03G0328600 Rorug03G0331700 Rorug03G0331800 Rorug05G0312900
rosa_samantha Rh4DG024700 Rh4DG024900 Rh4DG025000 Rh4DG025200 Rh4DG025500 Rh4DG025900 Rh4DG026200 Rh4DG030200 Rh5DG407000
rosa_wichuraiana Rw4G002360 Rw4G002410 Rw4G002420 Rw4G002450 Rw4G002480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 953
AclI AACGTT 1 cut(s) 65
AclWI GGATC 3 cut(s) 236, 260, 662
AcoI YGGCCR 1 cut(s) 747
AcsI RAATTY 2 cut(s) 179, 659
AfaI GTAC 1 cut(s) 742
AfiI CCNNNNNNNGG 1 cut(s) 943
AgsI TTSAA 9 cut(s) 41, 221, 277, 664, 703, 804, 931, 1039, 1046
AjnI CCWGG 1 cut(s) 1061
AjuI GAANNNNNNNTTGG 2 cut(s) 99, 131
AloI GAACNNNNNNTCC 2 cut(s) 275, 307
AluBI AGCT 3 cut(s) 21, 730, 1088
AluI AGCT 3 cut(s) 21, 730, 1088
AlwI GGATC 3 cut(s) 236, 260, 662
AoxI GGCC 2 cut(s) 648, 747
ApeKI GCWGC 1 cut(s) 384
ApoI RAATTY 2 cut(s) 179, 659
AspS9I GGNCC 2 cut(s) 1116, 1137
AsuC2I CCSGG 2 cut(s) 571, 652
AsuHPI GGTGA 1 cut(s) 643
AvaII GGWCC 2 cut(s) 1116, 1137
BaeGI GKGCMC 1 cut(s) 136
BauI CACGAG 1 cut(s) 590
BbsI GAAGAC 1 cut(s) 864
BbvI GCAGC 1 cut(s) 371
BccI CCATC 7 cut(s) 64, 448, 562, 682, 908, 984, 1008
BceAI ACGGC 1 cut(s) 651
BciT130I CCWGG 1 cut(s) 1063
BcnI CCSGG 2 cut(s) 571, 652
BfaI CTAG 1 cut(s) 323
BfmI CTRYAG 1 cut(s) 385
BglII AGATCT 1 cut(s) 536
BisI GCNGC 1 cut(s) 385
BlpI GCTNAGC 1 cut(s) 902
BlsI GCNGC 1 cut(s) 386
Bme1390I CCNGG 3 cut(s) 571, 652, 1063
Bme18I GGWCC 2 cut(s) 1116, 1137
BmgT120I GGNCC 2 cut(s) 1116, 1137
BmiI GGNNCC 1 cut(s) 767
BmrFI CCNGG 3 cut(s) 571, 652, 1063
BmsI GCATC 1 cut(s) 957
BpiI GAAGAC 1 cut(s) 864
Bpu1102I GCTNAGC 1 cut(s) 902
BpuEI CTTGAG 1 cut(s) 371
BpuMI CCSGG 2 cut(s) 571, 652
BsaJI CCNNGG 5 cut(s) 136, 338, 373, 852, 1061
BsaWI WCCGGW 1 cut(s) 268
Bsc4I CCNNNNNNNGG 1 cut(s) 943
Bse1I ACTGG 1 cut(s) 902
Bse3DI GCAATG 1 cut(s) 771
BseBI CCWGG 1 cut(s) 1063
BseDI CCNNGG 5 cut(s) 136, 338, 373, 852, 1061
BseGI GGATG 2 cut(s) 414, 948
BseLI CCNNNNNNNGG 1 cut(s) 943
BseMI GCAATG 1 cut(s) 771
BseMII CTCAG 2 cut(s) 186, 265
BseNI ACTGG 1 cut(s) 902
BseSI GKGCMC 1 cut(s) 136
BseXI GCAGC 1 cut(s) 371
BshFI GGCC 2 cut(s) 650, 749
BsiSI CCGG 3 cut(s) 269, 571, 651
BslI CCNNNNNNNGG 1 cut(s) 943
BsnI GGCC 2 cut(s) 650, 749
Bsp1286I GDGCHC 1 cut(s) 136
Bsp143I GATC 7 cut(s) 85, 94, 241, 265, 526, 536, 654
Bsp1720I GCTNAGC 1 cut(s) 902
BspACI CCGC 1 cut(s) 953
BspANI GGCC 2 cut(s) 650, 749
BspCNI CTCAG 2 cut(s) 185, 264
BspHI TCATGA 1 cut(s) 307
BspLI GGNNCC 1 cut(s) 767
BspMAI CTGCAG 1 cut(s) 389
BspPI GGATC 3 cut(s) 236, 260, 662
BsrDI GCAATG 1 cut(s) 771
BsrI ACTGG 1 cut(s) 902
BssECI CCNNGG 5 cut(s) 136, 338, 373, 852, 1061
BssMI GATC 7 cut(s) 85, 94, 241, 265, 526, 536, 654
BssSI CACGAG 1 cut(s) 590
BssT1I CCWWGG 3 cut(s) 338, 373, 852
Bst2BI CACGAG 1 cut(s) 590
Bst2UI CCWGG 1 cut(s) 1063
Bst4CI ACNGT 3 cut(s) 206, 494, 631
Bst6I CTCTTC 1 cut(s) 853
BstC8I GCNNGC 2 cut(s) 747, 986
BstDEI CTNAG 5 cut(s) 172, 251, 479, 902, 1106
BstDSI CCRYGG 1 cut(s) 136
BstENI CCTNNNNNAGG 1 cut(s) 941
BstF5I GGATG 2 cut(s) 414, 948
BstKTI GATC 7 cut(s) 88, 97, 244, 268, 529, 539, 657
BstMBI GATC 7 cut(s) 85, 94, 241, 265, 526, 536, 654
BstNI CCWGG 1 cut(s) 1063
BstNSI RCATGY 1 cut(s) 292
BstSCI CCNGG 3 cut(s) 569, 650, 1061
BstSFI CTRYAG 1 cut(s) 385
BstSLI GKGCMC 1 cut(s) 136
BstV1I GCAGC 1 cut(s) 371
BstV2I GAAGAC 1 cut(s) 864
BstX2I RGATCY 2 cut(s) 265, 536
BstXI CCANNNNNNTGG 1 cut(s) 832
BstYI RGATCY 2 cut(s) 265, 536
BsuRI GGCC 2 cut(s) 650, 749
BtgI CCRYGG 1 cut(s) 136
BtsCI GGATG 2 cut(s) 414, 948
BtsI GCAGTG 1 cut(s) 791
BtsIMutI CAGTG 1 cut(s) 791
Cac8I GCNNGC 2 cut(s) 747, 986
CciI TCATGA 1 cut(s) 307
Cfr13I GGNCC 2 cut(s) 1116, 1137
Csp6I GTAC 1 cut(s) 741
CviAII CATG 9 cut(s) 46, 280, 289, 308, 486, 617, 685, 862, 1144
CviQI GTAC 1 cut(s) 741
DdeI CTNAG 5 cut(s) 172, 251, 479, 902, 1106
DpnI GATC 7 cut(s) 87, 96, 243, 267, 528, 538, 656
DpnII GATC 7 cut(s) 85, 94, 241, 265, 526, 536, 654
DraI TTTAAA 1 cut(s) 27
EaeI YGGCCR 1 cut(s) 747
Eam1104I CTCTTC 1 cut(s) 853
EarI CTCTTC 1 cut(s) 853
Eco130I CCWWGG 3 cut(s) 338, 373, 852
Eco32I GATATC 1 cut(s) 259
Eco47I GGWCC 2 cut(s) 1116, 1137
EcoNI CCTNNNNNAGG 1 cut(s) 941
EcoRI GAATTC 1 cut(s) 179
EcoRII CCWGG 1 cut(s) 1061
EcoRV GATATC 1 cut(s) 259
EcoT14I CCWWGG 3 cut(s) 338, 373, 852
EcoT22I ATGCAT 1 cut(s) 627
ErhI CCWWGG 3 cut(s) 338, 373, 852
FaeI CATG 9 cut(s) 49, 283, 292, 311, 489, 620, 688, 865, 1147
FatI CATG 9 cut(s) 45, 279, 288, 307, 485, 616, 684, 861, 1143
FauI CCCGC 1 cut(s) 960
FauNDI CATATG 1 cut(s) 1112
Fnu4HI GCNGC 1 cut(s) 385
FokI GGATG 2 cut(s) 401, 935
Fsp4HI GCNGC 1 cut(s) 385
FspBI CTAG 1 cut(s) 323
GluI GCNGC 1 cut(s) 385
HaeIII GGCC 2 cut(s) 650, 749
HapII CCGG 3 cut(s) 269, 571, 651
Hin1II CATG 9 cut(s) 49, 283, 292, 311, 489, 620, 688, 865, 1147
HincII GTYRAC 2 cut(s) 202, 994
HindII GTYRAC 2 cut(s) 202, 994
HinfI GANTC 3 cut(s) 52, 752, 1008
HpaII CCGG 3 cut(s) 269, 571, 651
HphI GGTGA 1 cut(s) 643
Hpy166II GTNNAC 3 cut(s) 202, 589, 994
Hpy188I TCNGA 6 cut(s) 94, 175, 231, 246, 1013, 1137
Hpy188III TCNNGA 5 cut(s) 187, 308, 350, 590, 763
Hpy8I GTNNAC 3 cut(s) 202, 589, 994
HpyAV CCTTC 5 cut(s) 35, 101, 436, 1106, 1150
HpyCH4III ACNGT 3 cut(s) 206, 494, 631
HpyCH4IV ACGT 2 cut(s) 65, 130
HpyF3I CTNAG 5 cut(s) 172, 251, 479, 902, 1106
HpySE526I ACGT 2 cut(s) 65, 130
Hsp92II CATG 9 cut(s) 49, 283, 292, 311, 489, 620, 688, 865, 1147
Kzo9I GATC 7 cut(s) 85, 94, 241, 265, 526, 536, 654
LmnI GCTCC 1 cut(s) 324
Lsp1109I GCAGC 1 cut(s) 371
LweI GCATC 1 cut(s) 957
MaeI CTAG 1 cut(s) 323
MaeII ACGT 2 cut(s) 65, 130
MaeIII GTNAC 4 cut(s) 488, 494, 631, 893
MalI GATC 7 cut(s) 87, 96, 243, 267, 528, 538, 656
MboI GATC 7 cut(s) 85, 94, 241, 265, 526, 536, 654
MboII GAAGA 9 cut(s) 188, 275, 531, 840, 869, 919, 923, 1051, 1072
MflI RGATCY 2 cut(s) 265, 536
MhlI GDGCHC 1 cut(s) 136
MluCI AATT 7 cut(s) 179, 460, 659, 698, 810, 866, 1068
MlyI GAGTC 1 cut(s) 746
MmeI TCCRAC 2 cut(s) 80, 269
MnlI CCTC 9 cut(s) 181, 224, 409, 413, 428, 586, 779, 901, 1129
Mph1103I ATGCAT 1 cut(s) 627
MseI TTAA 2 cut(s) 26, 830
MslI CAYNNNNRTG 2 cut(s) 188, 830
MspI CCGG 3 cut(s) 269, 571, 651
MspR9I CCNGG 3 cut(s) 571, 652, 1063
MvaI CCWGG 1 cut(s) 1063
NciI CCSGG 2 cut(s) 571, 652
NdeI CATATG 1 cut(s) 1112
NdeII GATC 7 cut(s) 85, 94, 241, 265, 526, 536, 654
NlaIII CATG 9 cut(s) 49, 283, 292, 311, 489, 620, 688, 865, 1147
NlaIV GGNNCC 1 cut(s) 767
NmuCI GTSAC 2 cut(s) 488, 631
NsiI ATGCAT 1 cut(s) 627
NspI RCATGY 1 cut(s) 292
PagI TCATGA 1 cut(s) 307
PfeI GAWTC 2 cut(s) 52, 1008
PkrI GCNGC 1 cut(s) 386
PleI GAGTC 1 cut(s) 746
PpsI GAGTC 1 cut(s) 746
Psp1406I AACGTT 1 cut(s) 65
Psp6I CCWGG 1 cut(s) 1061
PspGI CCWGG 1 cut(s) 1061
PspN4I GGNNCC 1 cut(s) 767
PspPI GGNCC 2 cut(s) 1116, 1137
PstI CTGCAG 1 cut(s) 389
PsuI RGATCY 2 cut(s) 265, 536
RsaI GTAC 1 cut(s) 742
RsaNI GTAC 1 cut(s) 741
RseI CAYNNNNRTG 2 cut(s) 188, 830
SaqAI TTAA 2 cut(s) 26, 830
SatI GCNGC 1 cut(s) 385
Sau3AI GATC 7 cut(s) 85, 94, 241, 265, 526, 536, 654
Sau96I GGNCC 2 cut(s) 1116, 1137
SchI GAGTC 1 cut(s) 746
ScrFI CCNGG 3 cut(s) 571, 652, 1063
SduI GDGCHC 1 cut(s) 136
SfaNI GCATC 1 cut(s) 957
SfcI CTRYAG 1 cut(s) 385
SinI GGWCC 2 cut(s) 1116, 1137
SmiI ATTTAAAT 1 cut(s) 27
SmiMI CAYNNNNRTG 2 cut(s) 188, 830
SmlI CTYRAG 1 cut(s) 350
SmoI CTYRAG 1 cut(s) 350
Sse9I AATT 7 cut(s) 179, 460, 659, 698, 810, 866, 1068
SsiI CCGC 1 cut(s) 953
SspMI CTAG 1 cut(s) 323
StyD4I CCNGG 3 cut(s) 569, 650, 1061
StyI CCWWGG 3 cut(s) 338, 373, 852
SwaI ATTTAAAT 1 cut(s) 27
TaaI ACNGT 3 cut(s) 206, 494, 631
TaiI ACGT 2 cut(s) 68, 133
TaqI TCGA 3 cut(s) 261, 420, 542
TasI AATT 7 cut(s) 179, 460, 659, 698, 810, 866, 1068
TfiI GAWTC 2 cut(s) 52, 1008
Tru1I TTAA 2 cut(s) 26, 830
Tru9I TTAA 2 cut(s) 26, 830
TscAI CASTG 1 cut(s) 791
TseFI GTSAC 2 cut(s) 488, 631
TseI GCWGC 1 cut(s) 384
Tsp45I GTSAC 2 cut(s) 488, 631
TspDTI ATGAA 6 cut(s) 120, 172, 418, 474, 633, 1132
TspGWI ACGGA 1 cut(s) 723
TspRI CASTG 1 cut(s) 791
VpaK11BI GGWCC 2 cut(s) 1116, 1137
XagI CCTNNNNNAGG 1 cut(s) 941
XapI RAATTY 2 cut(s) 179, 659
XceI RCATGY 1 cut(s) 292
XcmI CCANNNNNNNNNTGG 1 cut(s) 859
XspI CTAG 1 cut(s) 323
Zsp2I ATGCAT 1 cut(s) 627
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.